Practical considerations for conducting ecotoxicity test methods with manufactured nanomaterials: what have we learnt so far?

The OECD testing strategy

The OECD test guidelines for testing chemicals have been used widely for regulatory purposes since the establishment of the MAD principle (Mutual Acceptance of Data) in 1981. This ensures that, if a chemical or substance is tested under the Good Laboratory Practice (GLP) conditions accordingly to an OECD test guideline, the data should be accepted in all OECD countries. The MAD principle depends on member states having confidence in the test protocols, and while surveys suggest that the available regulatory test methods are generally applicable for testing MNMs in terms of their over arching purpose albeit with modifications for MNMs (Crane et al. 2008), the OECD is also proactive in examining the robustness of its protocols for MNMs. The existing OECD test guidelines have been reviewed in the light of their applicability for testing MNMs under the OECD Working Party of Manufactured Nanomaterials (WPMN) (OECD 2009). For these review tasks four subgroups were formed to evaluate the guidelines for: (i) physico-chemical characterisation, (ii) effects on environmental biota, (iii) environmental fate and (iv) health effects with dosimetry. The tasks of the subgroups included identification of the potential problems with each suite of test methods, and also to offer preliminary guidance on testing MNMs in each test, along with any proposed modifications to the existing test guidelines, or to identify needs for new methods. The WPNM quickly identified that the size of the data set on MNMs was not large enough (i.e. not enough experiments done to date) to reach conclusions that could be sufficiently robust to form the basis of any mandatory change in protocols, but nonetheless guidance has now been offered in some areas on what could be done or should be done. For example, there are some common approaches to dispersing MNMs so that known doses are added to test systems (OECD 2010a). Thus currently the guidance on dosimetry for biological effects studies and bioaccumulation tests are similar. This also highlights, that a rationale scientific approach can solve methodological problems for seemingly different MNMs.

The overall testing strategy and what tests to prioritise in the testing regime are also being considered, particularly in the context of the fate and behaviour of MNMs. There are concerns that MNMs will aggregate or agglomerate in natural systems (e.g. in seawater, Klaine et al. 2008), leading to deposition of MNMs on sediment surfaces. In 2007, the OECD adopted a new method for testing the bioaccumulation of chemicals into sediment-dwelling worms using Lumbriculus variegatus (OECD 2008). Clearly, a benthic test of this kind may be more relevant to the behaviour of MNMs, and perhaps should be earlier on in the testing strategy, although it is a longer test. For example by including a benthic test within the base-set of acute toxicity tests (algal growth test, Daphnia immobilisation test, 96 h fish test).

Concerns have been raised that some OECD tests may be inappropriate or even flawed, or at best require very substantial modifications to work with MNMs. This includes, for example, tests designed to measure bioconcentration factors (BCF), such as the OECD BCF test with fish (OECD 305, OECD 1996). Apart from concerns regarding the ability of the experimenter to maintain consistent, if not well characterised exposures over tests that last weeks or months, it is likely that in most cases the relatively large size (1–100 nm) of MNMs compared to molecules (angstroms, <1 nm) may limit their uptake by fish (see Handy et al. 2008b for detailed discussion of uptake). The standard BCF test where the test substance is added to the water until steady-state is achieved with the organism may therefore not be suitable. However, the OECD is looking at alternative ways to achieve dosing, and a dietary bioaccumulation factor (BAF) test with fish is one possibility being considered for organic chemicals (Fisk et al. 1998; Stapleton et al. 2004). This spiked food method is suitable for the testing of poorly soluble large molecules, and might therefore have some utility with some MNMs with similar properties.

The OECD is currently testing a suite of 14 “representative” MNMs (the OECD sponsorship programme; OECD 2010b). The aim of this programme is to identify hazards from a well defined/characterised set of MNMs with different shapes/surface chemistries, but also to evaluate the applicability of the existing OECD test guidelines for testing MNMs. The sponsorship programme is expected to take a few years, but at the end of the process, the OECD should be able to offer better guidance on dosimetry and test designs, as well as having a better understanding of how different the testing of MNMs is compared to their nearest bulk material counterpart, or equivalent conventional chemical as appropriate. Of course, ultimately each test method and any allowable deviations in the test conditions must be validated before the MAD principle can be applied to MNMs. The OECD is therefore only at the start of this process for MNMs.

Cleaning and preparing apparatus

Research papers on nano ecotoxicology often do not report laboratory procedures for cleaning the ecotoxicity test system, so a systematic review of this aspect in the literature is currently not possible. However, the consensus view from the bench is that normal cleaning procedures, such as acid washing glassware with nitric acid or aqua regia, appear to work for most MNMs. Similar to the situation with traditional chemicals, pilot experiments to determine the adsorption and desorption of MNMs from the test vessels should be performed, especially when there is a need to maintain low concentration during experiments. Many pristine MNMs are hydrophobic and will form a film on the surface of test vessels (e.g. SWCNTs on glass fish tanks, Smith et al. 2007), but this problem is not nano-specific and is known for other hydrophobic substances. In the case of SWCNT, cleaning glass with house hold detergents, rinsing in water, followed by normal acid washing procedures is sufficient. Repeated abrasive cleaning of glass or plastic will scratch the surfaces, and provide points of nucleation for the aggregation of the test MNM; but this can be resolved by using disposable plastic or glass ware.

Nanomaterial interference with electrodes

There are concerns that MNMs may interfere with chemical and biological assays, and this has been discussed for colorimetry (e.g. Monteiro-Riviere et al. 2009). However, the interference of MNMs with electrodes has not been documented and ecotoxicologists may need to measure water pH, conductivity/salinity, dissolved oxygen and sometimes free metal ion concentrations in the test media using potentiometry and related methods. The problems with electrodes can be rationalised into several areas for MNMs: (i) the coating or adsorption of the MNM onto the working parts of the probe, (ii) interference with the electrochemical properties of the solutions or gels inside the probes, (iii) the creation of spurious voltages by MNMs.

Adsorption of MNM to the glass or polymer surfaces of probes has been observed with the less soluble metal oxides including TiO₂, and with hydrophobic substances such as carbon black, unfunctionalised C₆₀ and SWCNT (Handy, unpublished observations). For combination glass electrodes like pH probes the MNM can coat the sensitive glass bulb (preventing the analyte reaching the detection surface), or block the sintered plug, with both problems reducing the speed of response and sensitivity of the electrode. The adsorption of hydrophobic chemicals to electrode surfaces is not a new problem, but the MNM-specific issue is that the glass bulb is much harder to clean, and any exposed sintered surface, tape or resin is almost impossible to clean. Washing the electrode using the manufacturer’s recommended cleaning procedure will often be insufficient and only partly restore function, and etching the glass surface of the probe with strong nitric acid for a few seconds may, as a last resort, restore the response. The electrical responsiveness of combination pH electrodes should follow that expected from the Nernst equation (typically 59.16 mV/pH unit at 25°C for a combination pH probe), and the responsiveness of other combination electrodes can be checked using the voltage function on the metre in a similar way.

A second concern is for MNM interference with the filling solutions inside electrodes. Commercially available glass combination ion-selective electrodes (ISEs) are usually filled with high ionic strength media (e.g. 3 M KCl) and often have an internal Ag/AgCl₂ reference. However, the glass bulbs of most ion-selective electrodes (including pH probes) are ion-exchange surfaces that create voltage (Durst 1967), they are not porous to the ion being detected per se, and would not be permeable to much large MNMs. Therefore worries such as the precipitation of silver chloride from silver NPs inside the electrode are unfounded for glass combination probes. However, there are now many varieties of “solid state” ISE on the market, and these probes often have a porous membrane covering a graphite or plastic tube filled with an ion-exchange gel or ion-sensitive resin. The external surface of these probes are easier to clean (there is no thin glass bulk to break), but the membrane covering the tip of the probe is a simple mechanical barrier with a mesh size of hundreds of microns, and will be freely permeable to ions and MNMs. The matrix inside the probe is often a fixed polyanion (negatively charged polymer) to detect the cation of interest. The permeability of MNMs through the matrix of solid state electrodes has not been measured experimentally, but MNMs may get tangled with the polymers (steric hindrance). For cationic solid state ISEs specifically, any positively charged MNM trapped in the matrix will theoretically lead to a spurious potential inside the probe (analogous to a junction potential, see below), or repel the dissolved cation of interest (loss of sensitivity). Changing the pH of the test media to the point of zero charge will not resolve this problem, as it is the environment inside the probe that matters. The experimenter has no capacity to replace the resin in the probe (designed to be disposable), and so replacing the electrode is often the only way forward. There are similar concerns of MNM penetration inside the probe for gas-sensing electrodes (e.g. oxygen electrodes, carbon dioxide gas measurements), where the pore sizes in the membrane covering the tip of the probe is usually in the μm range, depending on the gas to be detected (e.g. Horn et al. 2010). However, even if MNMs penetrated inside such a probe, the high ionic strength would likely precipitate the MNM, directly, or in the case of Ag released from the surface of Ag NPs precipitate as AgCl₂. Any precipitation of the chloride inside the probe will change the response time of the electrode. The experience at Plymouth with Clarke-type oxygen electrodes is that the probes will work with TiO₂ NPs, Ag NPs, Cu NPs, Silica NPs (citrate or alumina-coated), C₆₀, carbon black and SWCNT. However, the variability in reading samples around 100% saturation of oxygen is greater than in clean solutions (i.e. be more careful and take triplicate readings). Replacing the membrane and the filling solution fully restores the function of the oxygen electrode if the calibration criteria are not met.

The problem of spurious voltages is especially important where separate half-cells are used (i.e. separate positive and negative electrodes). This is the case for some commercially available ion-selective electrodes for metals, and also for the electrodes used in physiological experiments to measure membrane potential on single cells, transepithelial potentials across tissue, or compound action potentials in nerves. Some MNM will deposit on the tip of the probes in physiological salines (observed at Plymouth for TiO₂ bulk and NPs, Ag NPs, Cu NPs, C₆₀, carbon black and SWCNT, every material examined so far). This creates junction potentials of the order of a few mV, and given that transepithelial potentials on live tissue (e.g. gut, Handy et al. 2000) may be of similar magnitude; it becomes absolutely essential to correct for junction potentials. This problem is well known for traditional dissolved metals, and an experienced physiologist would routinely check for junction potentials in any experiment. This can be done, by checking the short circuit on the half-cells with a salt bridge in the presence/absence of the MNM each time the electrode is calibrated. In addition, if there are concerns about spurious junction potentials from MNMs, then a mixed calibration procedure can be used for ISEs (e.g. see Handy 1989) where the calibrating solutions for the electrode is made with a range of dilutions of the interfering substance. The mixed calibration approach was originally devised for solutes, but will work for MNM providing (most important) that the stirring of the calibration solutions are kept constant as this also alters the size of the junction potentials from particles or dissolved ions.

Experimental design, reference materials and particle size controls

Aspects of experimental design including replication, the types of controls to use and the availability of reference materials. Experimental design and example decision trees on what characterisation could be done for different types of MNMs have been discussed at length elsewhere for ecotoxicity studies (Crane et al. 2008; Hassellöv et al. 2008; Stone et al. 2010). Some key points include characterising the starting material or stock dispersions using more than one technique so that a weight of evidence can confirm the primary particle size, the distribution of sizes in the dispersion and the presence of impurities that might also be toxic to the test organisms. The use of particle size controls should be included in experiments where the aim is to infer a nano scale effect, and metal salt controls where the objective is to understand how nano metal toxicity compares to the traditional dissolved metal paradigms used in metals risk assessments (Handy et al. 2011). Importantly, there is no need for bespoke or totally unique experimental designs for every new type of MNM in the future, and instead the application of the principles outlined here should enable good experimental design with new MNMs as they emerge.

Researchers have attempted to compare ordinary bulk powders with nano scale material of the same chemical to infer particle size-effects (e.g. TiO₂ NPs vs. ordinary TiO₂ powder, or C₆₀ vs. graphite or carbon black particles). However, in order to truly test a particle-size effect, the bulk material (a conventional material with a size above 100 nm) must be exactly the same as the MNM in every respect, except size. This is often impossible to achieve. The experimenter has the challenge of finding a substance of different sizes with exactly the same crystal structure, surface topography, surface charge, porosity, chemical composition and levels of impurities (see discussion in Ramsden et al. 2009 for TiO₂). The use of characterised materials from the OECD sponsorship programme, available via the Joint Research Centre (JRC, http://irmm.jrc.ec.europa.eu/) in Europe, or well characterised materials from other agencies such as the National Institute and Science and Technology (NIST) in the USA will not resolve these problems, as some of the changes in the properties of the material are inherent in making the materials at different sizes. However, with characterised materials becoming available, at least there is an opportunity to select test materials that have minimal differences with respect to particle-size controls. Even for researchers attempting to custom-synthesise particles of different sizes using the same starting chemicals there remains the inherent problem that the particle dispersion characteristics are also a function of size (see Handy et al. 2008a on DLVO theory) and it is inevitable that the experimenter will not be able to maintain exactly the relative size distributions with each material. At best, one might obtain a particle size with reasonably defined limits (e.g. nominal size ±10 nm range) and design the experiment so that the selected mean particle sizes do not overlap.

The question arises as to whether more replication is needed in experiments with MNMs compared to conventional chemicals. This does not seem to be the case, with authors reporting standard deviations or standard error on measurements from MNM treatments with a similar magnitude to those on bulk powder or dissolved metal salt treatments (e.g. TiO₂, Galloway et al. 2010; silver, Gaiser et al. 2011). Statistical methods used to estimate the level of replication required (e.g. power analysis) are valid for MNMs, with the caveat for all chemicals that power analysis is only appropriate for normally distributed (parametric) data.

Finally, the use of solvent controls, or more accurately termed, “dispersion controls” in the case of MNMs, should be considered. The environmental relevance, and advantages of different dispersion methods (dispersing agents, sonication, stirring) are discussed at length elsewhere (Crane et al. 2008; Handy et al. 2012), but if dispersing agents are used, then a dispersion control must be included in the experimental design. Notably some dispersing agents that are good at dispersing MNMs from the view point of chemistry (e.g. tetrahydrofuran, THF), are not biocompatible and cause toxicity (e.g. Henry et al. 2007). Inevitably, compromises may be achieved where a reasonable dispersion can be achieved with limited side effects on the test organisms (see Smith et al. 2007 on sodium dodecyl sulphate (SDS) with SWCNT). Dispersants fall into two broad groups from the biological perspective: (i) natural materials such as fulvic acids, humic acids, peptides/proteins and natural gums like gum arabic, or (ii) synthetic substances that are purposefully designed as dispersing agents or surfactants, such as pluronic solutions and SDS. Natural dispersants, such as the humic and fulvic acids from decaying leaf litter in freshwaters may be less toxic and more environmentally relevant, but they are often not well characterised with wide variations of dissolved organic matter occurring in nature. Synthetic dispersing agents at least have a well-defined chemical structure and composition (purity), but can be more toxic than natural materials.

Are current end points adequate for manufactured nanomaterials?

The standard biological end points used in regulatory hazard assessment (e.g. mortality, growth rate, reproduction) remain appropriate for MNMs in the context of supporting data for environmental risk assessment (see discussions in Crane et al. 2008). However, researchers studying the fundamental mechanisms of MNM toxicity are using a wide variety of end points (physiological/behavioural assays, histology, biochemical and molecular methods) that have been used for many years for conventional chemicals (review, Handy et al. 2002). Nanomaterials do show toxic responses (oxidative stress, genotoxicity, organ pathologies, etc., Federici et al. 2007; Smith et al. 2007; Vevers and Jha 2008) that are well known for traditional chemicals. It would therefore seem that these existing approaches (albeit with validation for interference from the particular MNM being tested) are likely to be useful end points for MNMs. So far, unique nano-specific biological responses, or mode of action, have not been sufficiently identified to enable the construction of a bioassay or biomarker for MNM exposure or effect (see Handy et al. 2012). It may also be illogical to seek a single nano-specific diagnostic assay, given the diverse chemistries and surface structures of MNMs.

Electron microscopy

Direct observation of the MNMs in question is the preferable option for verifying the presence, size and interaction of MNM in the test matrix, and here microscopy methods offer this advantage. However, MNM distribution can be very heterogeneous in an environmental sample and so considerable effort may be expended simply locating MNM in each sample. Microscopy of all kinds can therefore be laborious, but then, this equally applies to traditional methods of detecting the effects of chemicals in organism by microscopy; and this expectation is not new to the ecotoxicologist. Some of the better microscopy techniques for locating MNMs in complex media are discussed below.

Electron microscopy represents an important technique for directing viewing NPs at their original domain sizes (e.g. primary particle size). Transmission electron microscopy (TEM) allows for the highest magnification of nano-sized structures but solely from a two-dimensional perspective, and is best applied to electron dense material (i.e. metal and metal oxide NPs, quantum dots) that can absorb the electron beam and be effectively visualised against the bright field background. However structures that diffract electrons in the beam can also be visualised from the pattern of electron back scattering (Bragg scattering), and this applies to crystalline materials like silica and to carbon nanotubes. Scanning electron microscopy (SEM) also allows for imaging of nano-size domains but has roughly about one to two orders of magnitude less magnification capability, and thus is difficult to view primary MNMs. However, SEM is particularly useful for studying MNMs in complex environmental and biological matrices (freshwater, seawater, pore water extracts from soils, cells/tissues), and for its ability to create three-dimensional images. This is done in SEM by slightly tilting the sample stage between images as to create a stereoscopic image of the particles. Significant improvements in SEM instrumentation have come with the incorporation of field emission technologies which allows scanning electron microscopes to attain magnifications comparable to TEM.

Particle size, shape and size distribution can be determined directly from SEM and TEM images using digital processing, or by scoring images manually. This can be done especially well for metal NPs provided that a suitable dilution is made so that individual particles can be seen (e.g. 10 mg l⁻¹ TiO₂ and counting about 100 particles, Federici et al. 2007) for statistical analysis of the mean primary particle size. The counting of carbon nanotubes is often more problematic as the tubes will tangle together during TEM preparation and scoring individual tubes becomes difficult. However, sophisticated topographical analysis can be conducted for complex domains structures, such as characterising particles using such as fractal parameters. For example, Kennedy et al. (2009) showed significant difference in the fractal dimension of multi-walled carbon nanotubes (MWCNTs) (as shown in TEM images) resulting from stirring versus sonicating suspensions.

In addition to high magnification, most electron microscopy systems contain X-ray detection capabilities, such as energy dispersive X-ray (EDX) spectroscopy or X-ray diffraction (XRD). These capabilities are important for identifying and spatially resolving elemental domains within samples in the electron images. This application is particularly important as co-location of elemental domains in particles can provide clues to possible complexation between the MNM surface and constituents and the matrix of interest (Fig. 1). For example, Choi et al. (2009) attributed the reduction of nanosilver toxicity in nitrifying bacteria to the complexation of dissolved silver by biological thiol groups. This conclusion was reached from SEM-EDX images showing immediate co-location of sulphur and dissolved Ag on the cell surface. TEM instruments are increasingly equipped with XRD capabilities. This allows the identification of particles in the image by its X-ray diffraction pattern, assuming the particle is sufficiently crystalline for database matching. EDX and related methods rely on excited electrons falling back into an inner electron orbital within the atom (with subsequent release of the energy as electromagnetic radiations), and therefore only works with atomic numbers greater than four; but in practise anything much smaller than a sodium atom gives a weak signal, with the technique working best for the heavier metals that MNMs also tend to be made from (e.g. Cd, Ti, Ag, Cu, Zn, Fe).

Most of the drawbacks from the use of electron microscopes arise from the creation of artefacts due to the fact that samples must be analysed under ultra-high vacuum. This condition requires the sample to be completely desiccated before analysis. Removing the MNM from solution creates a number of different artefacts including aggregation, distortion of particles and potential salting-out of matrix components. These factors can represent substantial complicating factors for interpreting images, particularly for MNMs with highly hydrated or gel-like coatings. New electron microscopes are now available, such as environmental scanning electron microscopy (ESEM) that allow for imaging of samples in liquid and in the presence of a gas phase under non-evacuated conditions. However, the ESEM setup is currently not compatible with field emission sources, necessary for imaging primary particles in SEM.

Electron microscopy equipment sensitive enough to image nanoscale particles can be prohibitively expensive, although new, high capacity, economic microscopes appear to be on the horizon. Like all microscopy techniques, electron microscopy is labour intensive and time consuming, with limited throughput for a large number of samples. Also, EDX detection is limited to percent levels of elements when under high magnifications because of the low amount of incident radiation. Completing a typical EDX map with sufficient spectral resolution at ×9600 magnification can take on the order of 4–6 h per region of interest. Also, particle shape and surface morphology can distort how the particles are represented in the processed image, often making it difficult to identify particles in complex matrices. One can spend an inordinate amount of time “hunting” for MNMs and their distinguishing features by X-ray profiling alone. Fortunately, much of the time spent hunting MNMs in complex matrices can be reduced by switching the detector to backscattering mode, where elements of high electron density or high atomic weight (Z) appear as “bright” images in the microscope. Under this regime, backscattering analysis is not sufficiently sensitive to discriminate between the different high Z elements and so suspected domains must still be mapped by EDX to verify the particle composition in the image.

Dark-field microscopy

One technique that is gaining popularity involves dark-field detection of MNMs. This technology is well suited for high Z NPs that give off distinguishing plasmon resonance signatures. This is important for example with nano silver as plasmon resonance changes both with size and the presence of dissolved silver through particle surface oxidation and dissolution. Coupling this microscopy with a hyperspectral detector expands the range of analysis from those merely observable at visible wavelengths to near infrared (NIR) regions. This is important as plasmon resonance shifts to higher wavelengths beyond the visible spectrum with increasing MNM size. The coupled dark-field, hyperspectral techniques are ideal for MNMs in complex matrices, where other colloidal materials may exist. However, this method is mainly limited by the slow sample throughput when a large number of samples are required. Also, this technology is more limited toward lower Z elements, particularly carbonaceous MNMs, in biological matrices.

X-ray spectroscopies using synchrotron radiation

Synchrotron light is generated at specialised facilities where samples are analysed with high-energy, and monochromatic X-ray electrons are generated and used for high-resolution mapping and chemical speciation of solids. The mapping technique, known as micro-X-ray fluorescence (μ-XRF), works by hitting the sample with an incident X-ray beam and measuring fluorescence to elemental excitation; similar to EDX. However, the flux or “brightness” of the Synchrotron-generated X-ray energy is such that the detection limits can be as much as six-orders of magnitude more sensitive than the combined SEM-EDX technique. Where EDX will mostly be able to detect aggregates representing domains containing percent-levels of NPs, μ-XRF can map much more diffuse distributions in samples.

A distinct advantage of μ-XRF is the ability to couple this technique with X-ray absorption spectroscopy (XAS). This technique is based on the excitation of core electrons in the atomic shell of elements by scanning a sample with incident X-ray electrons tuned at specific energies for an element of interest, resulting in a particular X-ray absorption behaviour. Thus, this technique provides direct structural information regarding NPs and their interaction with their environment. The two forms of XAS are X-ray absorption near-edge spectroscopy (XANES) and extended X-ray absorption fine structure (EXAFS). XANES refers to data collected near the element’s absorption edge while EXAFS refers to data collected at extended energies well above the absorption edge. With appropriate background correction, spectral normalization and Fourier-transformation, EXAFS data can be fitted to quantum mechanical models of X-ray scattering to describe the important details with respect to the type and number of coordinating atoms and their corresponding bond distances. For example, Fig. 2 shows the extended region for Pd NPs. Fitting of the data shows that Pd EXAFS spectra typical of what is seen as purely metallic Pd, with second-neighbouring Pd atoms occurring between 2.7 and 3.9 Å. The NPs show no evidence of oxygen formation (e.g. typically observed between 1 and 2 Å), such as due to sorption of surface oxygens, confirming the particles are metallic. This data demonstrates the powerful capabilities of XAS as many elemental and mineral domains within soils, etc. are quasi-crystalline at best, and thus, not distinguishable by common X-ray diffraction techniques.

The quality of both XANES and EXAFS data is highly concentration dependent. In general, EXAFS requires higher concentrations of elements to collect adequate signal for modelling than XANES. In cases where elemental concentrations are too low for EXAFS analysis, some structural information can be extracted from a statistical fit of XANES region data based on sets of known standard salts or reference sorbents. The most common involves a two-fold analysis: first, a principal component analysis to determine the maximum number of standards that are relevant for describing the sample, followed by a linear combination analysis to calculate the proportion of standard that is represented within the sample. These fits are evaluated diagnostically using both a reduced χ² value, which refers to goodness of fit of the model proposed, and a R-factor, which represents the fractional misfit of the data.

XAS can be combined with μ-XRF to speciate mapped out MNM domains. Typically, μ-XANES is possible on μ-XRF maps, but under special circumstances, μ-EXAFS can be performed as well. Although the substantial loss of incident energy, due to focusing the X-ray beam into a small spot size, reduces the signal to noise ratio of analysis.

An important advantage of these X-ray techniques is that they require little or no sample preparation for analysis. Samples can be brought to the beamline and analysed “as is” without requiring extraction, drying, or any other common preparatory techniques. Analyses are regularly conducted in a variety of complex matrices, including highly heterogeneous geologic material and biological tissues. For example, Scheckel et al. (2004) conducted a combined μ-XRF/XANES study on potted plants by hanging a leaf on the sample stage in the X-ray beam path to determine the distribution and speciation of As. Chappell and co-workers regularly combines both liquid speciation determinations sample extracts with XAS and μ-XRF studies to demonstrate the difference between the soluble and non soluble phases on contaminants in soil.

There are perhaps two main limitations of utilising XAS: One involves beamline access to these specialised facilities. Currently, there are only a handful of Synchrotron devices throughout the world. Access is typically granted on a competitive proposal basis. Another limitation involves the fact that considerable expertise is necessary to adequately apply this technology for analysis. In particular, there are numerous pitfalls in experimental setup, data collection and data processing that only those who are very experienced with the technology can avoid. In short, there is no such thing as a casual user of XAS. Fortunately, most research utilizing μ-XRF and XAS involves highly collaborative projects, including partners with varying expertise in these techniques.

Light scattering techniques

This method represents the most common forms of particle size analysis—light scattering and X-ray scattering. Light scattering is especially popular given its ready adaptability to most solid–liquid system and high sample throughput. These measurements are based on the relationship between a particle’s diffusion coefficient in solution and its size-dependent Brownian motion. Particle motion is calculated by time-integrated measurements of incidences of light scattering within a sample. Two major forms of light scattering are commercially available—dynamic light scattering (DLS)—a strictly particle sizing technique, measuring light scattering from a sample at one detection angle. Outfitting a DLS instrument with a special cell that allows for an applied voltage provides measures of particle charge or zeta potential—a measure designed to quantify the particle response to the applied electric field. DLS therefore works for spherical solid particles (i.e. almost all metal NPs), but is poor for hollow structures like C₆₀ and does not work for high aspect ratio materials like rigid carbon nanotubes which are far from spherical. The other common form of light scattering is called static light scattering (SLS). Instrumentation for SLS employs multiple detectors placed at different scattering angles so that differential intensities of the detection can be attributed to a particle’s shape size. In SLS, a particle’s scattering “pattern” is modelled based on expected scattering of geometric shapes for the calculation of a radius of gyration (R_G) value. In simple terms, the R_G value provides the average distance of motion around a particle’s geometric center. For dissolved polymers, SLS is useful for estimating a polymer’s molecular weight from its R_G value. For colloids, R_G values can be used for determining a particle’s hydrodynamic dimensions or conformation in solution if the particle structure is well characterised (Cantor and Schimmel 1998).

It is important for the user to be aware of the limitations of light scattering instrumentation. First, and foremost, light scattering measurements are purely estimates of particle size and shape. For DLS, particle size calculations are based on the assumption of spherical geometry. These equations can be modified for non-spherical objects, but become very complex and are impractical for the ecotoxicologist. Fortunately, spheres represent a lower energy state for solid surfaces, and even flexible nanotubes will prefer to take on a spherical structure. Chappell and co-workers have observed CNT “hairballs” in solution.

Light scattering instrumentation optimised for the nano scale may also be limited with respect to the size of particles and suspension concentration. Light scattering intensity is generally related to the R⁶ (where R = particle radius) of the particle. This means that there is an eventual particle size that will saturate the detector and essentially “blind” the instrument. One can attempt to circumvent this problem by allowing samples to settle on the bench top for approx. 24 h, or for example, the DLS instrument can be configured for an upper-particle limit of approximately 3000 nm. The instrument also needs an adequate number of particles to scatter and in practise dispersions in tens of mg l⁻¹ range work well, but samples too concentrated (hundreds of mg l⁻¹) will give poor scattering. Too few particles will also prevent detection and in practise the DLS detection limit for particle dispersions is about 1 mg l⁻¹, and its use for ecotoxicology is therefore limited to acute toxicity studies or measurements in stock dispersions used for dosing. Light scattering methods are also poor at distinguish between particles of varying composition. Most natural waters (freshwater, seawater, pore water from soils/sediments) and the body fluids of organisms contain quantities of natural colloids where light scattering will not discriminate the MNMs in the sample.

A variant of SLS is known as SAXS or small-angle X-ray scattering (SAXS). Similar to SLS, SAXS measures the scattering of photons due to a colloidal shape. However, the shorter wavelength of X-ray radiation allows for much greater resolution and finer detail of particle shape and size than visible light scattering. This analysis is proving to be particularly useful for characterising high-aspect ratio MNMs such as CNTs. Figure 3 shows an example of MWCNTs sterically stabilised in an aqueous solution containing nonionic surfactant, Brij 35. Modelling the SAXS data using a potential distribution function calculated the CNT dispersion possessing a R_G of 15.2 nm. The size distribution of the CNT suspension was modelled as having a mean particle diameter of 27.7 nm, consisting of a trimodal particle size distribution centred on populations of 9.3, 27 and 51 nm. The size distribution of CNTs best conformed to a spheroidal geometric shape with an aspect ratio = 1.0.

Chromatographic techniques

Size exclusion chromatography can be used to separate particles. In principle, MNMs are injected into a very long column containing a porous, chemically inert, but well-characterised stationary phase. The particle plume spreads out based on individual particle sizes with the larger particle sizes traversing the column faster than the smaller particles. Once the particles elute from the column, they can be detected by any number of analyte or particle detection techniques (e.g. UV absorption, in-line DLS, fluorescence spectroscopy etc.). Substantial improvements to this technique include optimising the separation for nano-sized particles by introducing re-circulating flow through the original column or additional columns to enhance the separation resolution, especially for NPs in the range of 1–10 nm (Al-Somali et al. 2004). In addition to DLS, a SLS and capillary viscometer can be added in series for measuring particle R_G and suspension viscosity, respectively.

The advantage of adding a chromatography step is that it provides improved resolution of the particle size distribution when compared to simple batch light scattering measurements. However, disadvantages include the potential for micron scale material to lodge into pores and clog the column, making a preliminary size separation sometimes necessary (such as 24 h settling to remove the larger particles). Chromatography methods are also sensitive to the presence of other colloids and polymers in the system. However, the addition of particle or elemental specific detectors, such as ICP-MS, can alleviate some of these issues. For example, Bednar et al. (2007), use SEC-UV-ICP-MS to characterise organouranium complexes extracted from plant material.

Field flow fractionation (FFF) is similar to gel permeation chromatography except that NPs are separated through a combination of longitudinal and lateral flow gradients that separate particles by differential movement related to hydrodynamic size. This technique has proven especially useful for separating metallic NPs in natural freshwater containing organic matter where the dispersion may be reasonably stable. The advantages to FFF include customisable control of flow conditions enabling a high resolution of particle size distribution, non-destructive sampling so that the sample can be used for other measurements (bioassays, analytical chemistry). For example, connecting an ICP-MS in series with FFF allows for one to distinguish between dissolved and particulate forms of silver (Kennedy et al. 2010). Additionally, the ICP-MS elemental specific detector is extremely sensitive, allowing detection of NPs at the parts per billion range (Poda et al. 2011).

An important disadvantage of FFF is that it requires very stable suspensions of NPs in order to conduct the separation, as particle agglomerations will be separated based on the size of the agglomeration. For the ecotoxicologist, typical “unstable” samples that are less suited to FFF are unfunctionalised MNMs in seawater (high ionic strength media), crude homogenates of organisms, soil or sediment samples. A surfactant can be added to the mobile phase to sterically stabilise suspensions, but this creates its own artefacts including increasing hydrodynamic size, falsely shifting the particle size distribution to smaller values, as well as altering the ecotoxicity of any fractions subsequently tested in bioassays.

Test medium preparation

There are essentially two main approaches to adding MNMs to test soils. The MNM may be added as a dry powder and mixed into the dry soil, or the MNM can be added (or sprayed) onto the soil as a liquid suspension. Both methods have been applied in soil tests with MNMs (powder: e.g. Hu et al. 2010a; suspension: e.g. Scott-Fordsmand et al. 2008; Johansen et al. 2008; Roh et al. 2009), and each approach has advantages and disadvantages (Table 4). For example dry mixing may enable the MNM to spread throughout the soil sample, but addition as liquid to the soil surface may be more environmentally relevant. Current regulatory tests do not prescribe exactly how the test substance should be mixed with the soil. It may be prudent to tighten up this aspect of methodology with a standard mixing protocol (for example using a mechanical food mixer where the settings are known), rather than just allowing the experimenter to do this arbitrarily. Effective mixing of the soil could be monitored using an inert marker (e.g. chromic oxide that is widely used in the blending of experimental animal feeds), even if the original test material cannot be tracked.

The dosing method may influence bioavailability of the MNM and therefore the results of the test. For instance, the use of synthetic dispersing agents can alter MNM availability or subsequent toxicity in soil tests (Zhu et al. 2006). Natural dispersing agents are also available for soil matrices. Recently, organic material extracted from test soil was used as a dispersing agent to prepare a stock suspension of fullerene particles (Van der Ploeg et al. 2011). In this way a suspension with high concentrations of MNMs could be established, without adding interferences or toxicity of the synthetic dispersing agents (outlined above). “Dispersing agent controls” with only exposure to the dispersing agent should be included in the test design, as even additions of extra natural organic matter could change the soil properties.

Given the diversity of soil types, and MNMs, it is important to include a “bench mark” with a standard (artificial) soil in the test design, so that results of tests can be compared between studies. Indeed, many regulatory protocols for soils specify that an artificial soil of known composition must be used in the test, and then give details of how to make it. For example, in the OECD 222 earthworm reproduction test the soil is specified to be comprised of 10 per cent sphagnum peat (as close to pH 5.5–6.0 as possible), 20% kaolin clay, 0.3–1.0% calcium carbonate (to ensure the initial pH is 6.0 ± 0.5), and 70% air-dried quartz sand with more than 50% of the particles between 50 and 200 microns. This is typical of the recipes for artificial soils in regulatory protocols, which have a high sand content and only one type of organic matter or clay added. Nonetheless, while artificial soils may be criticised for being over-simplified and not being representative of the diversity of natural soils, the original purpose of using a defined artificial soil for bench marking and inter-laboratory comparisons is equally useful for tests with MNMs, especially while data are being collected to generate a consensus view on exactly how soil tests should be done.

Meanwhile, researchers are encouraged to provide more information on the exposure method than currently indicated in OECD test methods for soils, which were originally devised with conventional chemicals in mind. Specifically, for MNMs, this should include exact details of the method of dosing; such as the amounts of MNM added, volumes of MNM to soil, moisture content at the time of dosing, the speed/duration and method of any mixing, and information on attempts to verify that the mixing has achieved a homogenous spread of the MNM in the soil sample (or otherwise). Details of the types, concentrations, volumes and batch numbers, of dispersing agents should be documented. This would be in addition to the usual reporting of the measured details of the soil matrix (proportions of sand, organic matter, clay, pH, etc.) and robust characterisation of any starting material or stock dispersions (using the techniques above), including details of how stock dispersions were prepared (e.g. sonication times and intensities, stirring times/speeds, mass concentration, measured particle size distribution). In this respect, the current OECD guidelines are insufficient and collecting this extra information will allow cross-study comparisons (meta-analysis) and better interpretation of test results and understanding of test soil reproducibility with MNMs. At this stage, it is too early to give the experimenter a precise universal protocol for dosing and mixing soils with MNMs, because the particle-soil interactions are not understood. In the future however, it may at least be possible to arrive at guidelines for dosing particular types of soil (e.g. sandy soil, clay soil, etc.) with particular generic types of MNMs (e.g. hydrophilic or hydrophobic).

Characterisation issues specific to soil matrices

In addition to the generic discussions on characterisation (above), there are some specific issues that relate to tests using soil as the matrix. It is possible to characterise the MNM stock at the start of the experiment, i.e. the MNM as a powder (Scott-Fordsmand et al. 2008; Hu et al. 2010a), or in suspension (Johansen et al. 2008; Roh et al. 2009; Van der Ploeg et al. 2011), prior to adding it to the soil. However, no studies are available in which MNMs have been characterised in the test soil itself. Methods to characterise MNMs, like TEM and DLS for size distribution, or methods to assess zeta-potential are currently not applicable directly in soil samples. Furthermore, characteristics of the MNMs in the stock dispersion are unlikely to be informative or representative of the behaviour of the MNM in the soil, because the soil properties (e.g. pH, organic matter, clay content, cation exchange capacity, concentrations of major nutrients) may alter the aggregation state, surface chemistry and other properties of MNM (Hu et al. 2010b). Hence, characterisation of MNMs in the test soil remains an essential step in order to epitomise the exposure conditions. Techniques like energy dispersive spectroscopy or Fourier transform infrared spectroscopy have been applied to characterise NPs in plant tissues (e.g. Lee et al. 2008). Another approach, combining a modified application of SEM (WetSEM^™) with energy dispersive X-ray spectroscopy has been applied to image Au-NPs in soil suspensions (Tiede et al. 2009). Ag NPs could be visualised in activated sludge by hydrodynamic chromatography-ICP-MS (Tiede et al. 2010). Field-flow fractionation, coupled with specific detection methods like ICP-MS may also be used to analyse MNMs in soil or sediments (Dubascoux et al. 2010). Application of such techniques in soil medium may be a valuable approach for further development, although most of them need some sort of sample preparation in order to extract the MNM from the soil, which is likely to change their properties. This may be overcome by the application of for instance Raman spectroscopy, which has been used to analyse minerals in ore samples, although not at the nano-scale but at the micron-scale (Stefaniak et al. 2009).

Additionally, net exposure may be assessed by analysing MNMs concentrations in the test animals (Roh et al. 2009; Unrine et al. 2010a), although this will not give insight into the underlying MNM properties leading to such exposure levels. Based on this, a Critical Body Residue (CBR) approach may be developed (Ma 2005), in which CBR is defined as the lowest total body concentration of a compound in an organism, associated with adverse toxic effects. This approach may circumnavigate practical problems related to the characterisation of MNMs in soil, and may be useful in hazard assessment.

Selection of test species and end points for soil tests with invertebrates

In the OECD guidelines, several standard test species are described including, earthworm, collembolan and enchytraeid species. Other species have also been used in studies on conventional soil contaminants e.g. Caenorhabditis elegans (Höss et al. 2009), isopods, mites and other micro-arthropods (Graff et al. 1997; Dallinger et al. 1992; Vijver et al. 2006). However, the published data set on individual species are currently insufficient to form a consensus view on what type of MNM is most toxic to each species. For example, a Web of Knowledge search reveals only 22 papers on earthworms and NPs up until September 2011; and of these only 12 reports are on ecotoxicity, and even fewer included metal salt controls or detailed data on particle chemistry to enable data interpretation. Heckmann et al. (2011) performed a limit test with metallic NPs (1000 mg kg⁻¹ of the test materials) using earthworms (Eisenia fetida), and of a bank of metal salts, bulk and nano scale materials tested, only Ag NPs, Cu NPs and TiO₂ NPs were toxic at the high dose used in the limit test. This might suggest that earthworms are an insensitive species to metallic NPs, but a more likely explanation is that the OECD limit test using a soil matrix is simply not allowing the exposure to occur (low bioavailability). Longer experiments do report effects of carbon-based materials on earthworm species, isopods and C. elegans (Jemec et al. 2008; Roh et al. 2009; Scott-Fordsmand et al. 2008; van der Ploeg et al. 2011). For example, van der Ploeg et al. (2011) found that 15.4 and 154 mg C₆₀ kg⁻¹ soil caused some mortality, reduced juvenile growth rate and altered cocoon production by Lumbricus rubellus. This provides evidence that C₆₀ in soils does alter parameters in individuals that are critical to population level survival in this species, but with only a handful of such papers, one is far from concluding that carbon-based MNMs are a risk to soil invertebrate populations generally. Researchers are also beginning to unravel the complex of issue of exposure dose versus bioavailable metal for metallic MNMs (e.g. Unrine et al. 2010a, b; Shoults-Wilson et al. 2011). For example, Unrine et al. (2010a) showed that there was metal accumulation from Ag NP exposures in the earthworm E. fetida, and that on a particle number basis 20 nm Ag NPs were more bioavailable than 55 nm Ag NPs. Shoults-Wilson et al. (2011) also showed that Ag NPs with a hydrophilic (polyvinylpyrrolidone) or amphiphilic (oleic acid) coat caused some reproductive toxicity in E. fetida that was associated with tissue accumulation of Ag from the Ag NPs. However, overall there are not enough data to arrive at a consensus view on the most sensitive invertebrate species to use in soil tests with MNMs, or to construct species sensitivity distributions towards specific MNMs.

Species may be selected for logistics reasons given the difficulty of maintaining exposures with MNMs. For example, reproduction tests with earthworms can be relatively long-term (e.g. OECD 222 has 4 weeks exposure, then a further 4 weeks exploring reproductive end points), in comparison to reproduction experiments with C. elegans that can be conducted in about 21 days. The idea of changing the regulatory testing strategy for soil to a different organism so that a shorter test can be used is attractive from the view point of logistics and cost. The C. elegans reproduction test uses a liquid media containing essential salts, and this at least offers a media where some particle characterisation may be possible compared to soils at present. However, ease of experimentation is not the only consideration. In addition to the standard regulatory end points of mortality, growth and reproduction, species may be selected because they have features or utility in relation to specific modes of actions of chemicals. For example, one might select the earthworm to investigate oxidative stress or immunotoxicity because their coelomocyte responses are reasonably well described (e.g. Burch et al. 1999). However, the mode of action of most MNMs, in individual species, is still unknown. Where species selection on the basis of mode of action, or species sensitivity to the MNM cannot be made, it may be helpful to use omic-techniques to screen for effects. In this respect, the genomes of the earthworm Lumbricus rubellus, and the nemtatode C. elegans, have been sequenced (for Lumbricus genome, see http://xyala.cap.ed.ac.uk/Lumbribase/index.shtml; for C. elegans see www.wormbase,org). After such screening, it may then be possible to rationally select more specific end points or model organisms for soil testing.

Use of control observations in soil tests with MNMs

One concern in soil tests, especially the chronic tests involving reproduction that can last for weeks, is that the MNM may be chemically modified, resulting in changes in the surface properties, or physically modified (polymerised, or even dissolved in the case of some metal NPs). For instance, in a study on the accumulation of zinc oxide NPs in isopods, it was shown that the primary route of accumulation was through uptake of dissolved zinc that was generated by the dissolution of the particles (Pipan-Tkalec et al. 2010). In order to account for potential effects of dissolved metals, the test design can include metal salt controls. This control would represent the worst case scenario (complete dissolution of the MNM). For other materials, the effect of weathering or ageing may change the surface properties of the MNM (for example, auto oxidation and the generation of hydroxyl groups on the surface). In this case, the test design should include time-matched sampling of the controls, but also an aged soils containing aged MNMs. This approach essentially involved an ageing control where the soil is spiked with MNMs months before adding the test organisms. This would be in addition to the no-added MNM control (negative control), and dispersing agent controls (discussed above). Hence, a full design of a soil test will include controls of non-spiked soil (always), controls for ionic metal exposure in the case of metal MNMs, dispersing agent controls, aged soil/MNM control, as well as an artificial soil for bench marking.

Tests using terrestrial plants

For terrestrial plants, some standard tests are available that have been widely used for conventional chemicals (e.g. OECD test 208, 227). Many of the issues relating to soil invertebrate testing also apply to plant testing. Exposure via the soil is commonly used in research (Shah and Belozerova 2009), and in the OECD 208 seedling emergence and growth test there is a choice of different types of artificial sandy soils containing up to 1.5% organic carbon (notably, not the same recipe as the soils used for earthworm tests) as well as the choice to use natural soils. In the OECD 208 test there is a caveat relating to the use of clays in the soil that may inadvertently adsorb the test substance. For MNMs, research is needed to identify which soil recipes reduce the bioavailability of MNMs, and then a similar caveat can be inserted in the guidance documents. The OECD 227 vegetative vigour test involves spray applications of the test substance onto the plant. It has been shown that small MNMs may be accumulated through the stomata of leaves (Eichert et al. 2008). This process is thought to be very variable, and unpredictable for MNMs. For very small particles (<1.5 nm) this may demand specific tests, in which MNMs are deposited directly on the leaves of plant, after which accumulation or toxicity end points (e.g. inhibition of photosynthesis) could be measured.

In most regulatory tests the end points include emergence and/or growth of the plant. The latter is measured as plant biomass, and this may be recorded for different parts of the plant (e.g. root elongation) or whole seedlings biomass. This approach works for some MNMs when the seeds are grown in a MNM suspension and germination is allowed to occur on a filtration paper where the structure of the seedling can be easily observed (e.g. Lin and Xing 2007). Germination experiments have also been reported, using soil exposure (Au and Cu NPs) with lettuce (Shah and Belozerova 2009). Respiration and/or photosynthesis may also be useful end points for MNMs. Ma et al. (2010) reviewed the phytotoxicity of MNMs, describing effects on seedlings and plants. Toxicity to plants depended on the properties of the MNMs, and results differed between species. Like the soil tests with invertebrates, there is insufficient data to construct species sensitivity distributions or make recommendations on which species listed in the OECD tests should be used. At this stage of the research, the traditional end points should still be used (germination, growth, etc.), but biochemical end points relating to photo-inhibition by MNMs should also be explored.

Plant tests with MNMs could also use media other than soil. These include agar made of a simple polysaccharide medium containing minerals (e.g. Lee et al. 2008; Lee et al. 2010), or hydroponic media containing essential minerals and nutrients in solution (e.g. Seeger et al. 2009). Hydroponic exposure, or the use of agar as growing medium, enables characterisation of the MNM, and can result in a well defined exposure scenario. For instance, Lee et al. (2008) used agar as exposure medium to test effects of Cu-NPs on two plant species. They applied scanning-electron microscopy-cathodololuminescence to visualise NPs in the agar, although they used Zn-NPs as a substitute for the Cu-NPs because Zn-NPs have cathodololuminescence activity, and Cu-NPs do not. Similarly, Lee et al. (2010) used scanning electron microscopy to illustrate the dispersion of metal oxide NPs in agar. However, other properties like particle size, hydrodynamic diameter and zeta potential of the different NPs were only assessed in the aqueous growth medium, and not in the agar medium. Clearly, measurements of particle size that are based on the diffusion of particle (like hydrodynamic diameter), are easier to perform in media that is less viscous than agar. Anything that can be done to simplify the composition of the test media is likely to aid MNM characterisation. However, the choice of growth medium also depends on the scientific question being asked. The fact that growth media differ in ionic strength, viscosity, pH, etc. is an opportunity to explore the effects of environmental chemistry on MNM aggregation and bioavailability, and should not be seen just as negative issue relating to the challenges of MNM characterisation.

Similar to soil invertebrates, an alternative strategy for confirming exposure is to measure MNM on/in the plants themselves. For example, energy dispersive spectroscopy has been used to characterise internal Cu-NPs in roots of mung bean (Phaseolus radiatus). Lin et al. (2009) use light field microscopy, combined with FTIR-spectroscopy to assess C₇₀ fullerenes in different plant tissues (seed, root, leaf and stem). However, these measurements can be laborious, and in order to detect MNMs in tissue numerous images would need to be examined to form an opinion on how much or where the MNM is locating in the tissue. These approaches are therefore unlikely to be of routine use in regulatory tests. Nevertheless, for validation of specific routes of accumulation, or of the fate of MNMs in biological samples, these are very useful tools.

The cell wall of microbes as a barrier to MNMs

The prokaryotic cell is protected by its cell wall around the cytoplasmic membrane, and some of the nano issues for each layer of the bacterial envelope are summarised (Table 3). The structure of microbial cell walls is diverse, and they therefore present very different types of barriers to MNM uptake. In gram-negative Bacteria, there is an extra layer (the outer membrane) not present in Gram-positive Bacteria, but then this may be compensated by the thicker murein layer in the latter (Table 3). Ultimately the structure and ligand chemistry of the cell wall will have a strong influence on how MNMs interact with each type of microbes, with nano-specific consequences (Table 3). For example, the murein protects against hydrophobic molecules due to the fixed polyanionic residues (e.g. charged amino acids, amino sugars) of the gram-positive peptidoglycan. This charge effect should repel MNMs with fixed negative charge on their surfaces (or with a net negative charge) as well as hydrophobic materials. The same argument applies to the additional outer membrane found in Gram-negative Bacteria with negatively charged molecules such as the bacteria-specific lipopolysaccharide (Neidhardt et al. 1990), but in addition the outer membrane pore size is far too small to allow diffusive entry of MNMs (Table 3). Emerging toxicological data suggest these differences in cell wall morphology are important. For example, carboxyfullerenes inhibit Gram-positive but not Gram-negative Bacteria (Tsao et al. 2002; Lyon and Alvarez 2008). However, there are also significant knowledge gaps.

Archaea have so far been neglected in any culture-based ecotoxicological tests with MNMs, and are different from Bacteria in that they lack the murein layer and outer membrane (Table 3), but instead, rely on the S-layer (see below) or a reinforcement of the cytoplasmic membrane (Kandler and König 1993; Howland 2000). The lipids in the cytoplasmic membrane of the Archaea (mainly glycerol-ether lipids, De Rosa et al. 1986; Koga and Morii 2005) are different to those of the Bacteria (mainly glycerol-ester lipids, see Kandler and König 1993; Howland 2000), providing different permeability in each type of membrane. These structural differences have yet to be addressed for MNM uptake, and in relation to assay validity.

Many Bacteria and Archaea have a crystalline surface layer (S-layer), which is the outermost layer of the microbial cell and therefore will be critical for MNM interactions with the surface of the organisms. The S-layers is composed of glycoprotein molecules which non-covalently interact with each other, but are usually covalently linked to the appropriate underlying layer in Bacteria (Table 3). On average, the S-layer lattice has pores of 2–8 nm and is 5–10 nm thick (Sleytr and Messner 1988; Debabov 2006), with sugar moiety of the glycoproteins imparting a fixed negative charge to the S-layer. The S-layer could be regarded as a size-fractionating sieve for traditional chemicals and some macromolecules, but MNM interactions with this layer have not been investigated. This is a concern because the S-layer appears to be a non-conserved structure, which can even be influenced by environmental factors, and different strains of a particular species may be able to synthesise different S-layer proteins (Sleytr and Beveridge 1999). For toxicity tests, this could mean that MNM effects on microbes could be related to the variation of the structure and charge of the S-layer, requiring a greater number of microbial species to be incorporated into the testing strategy.

In contrast to the lack of knowledge on the function of the S-layer, it is known that passive entry of small hydrophilic molecules and ions into the cell is restricted in Gram-negative Bacteria and Cyanobacteria to small channels (porins) in the outer membrane. The sizes of the porins are generally too small to permit passive diffusion of MNMs. For example, the porin proteins OmpU and OmpT of Vibrio cholerae have an effective radius of about 0.55 nM and 0.43 nm, respectively (Duret and Delcour 2010). Secondly, the inner surface of the porin channel often exhibit charged amino acids (Neidhardt et al. 1990), and thus would also be a selective barrier to metal ions released by dissolution of particles at the cell surface.

The current model for the antimicrobial action of MNMs

From this short summary of the prokaryotic cell wall and cell surface it becomes apparent that single NPs as primary particles, and aggregates of NPs, are unlikely to penetrate an intact cell wall. Effects may also be material specific. Fullerenes and CNTs may not penetrate into the charged surface layers or peptidoglycan layer of the cell wall due to their hydrophobicity. Metal-NPs that may associate with the hydrophilic cell surface, will not penetrate the cell membrane because the porins/channels available are < 1 nm (see above). Therefore, it appears that the initial steps in MNM toxicity involves insult to the cell wall, which may then lead to damage of the mechanical cell defenses, and eventually, to bacterial death. Membrane damage via oxidative stress has been shown in microbes. Metal-NPs are known to lead to the photocatalytic production of ROS (e.g. Ling et al. 2004). Fullerenes also result in oxidative damage to the prokaryotic cell, despite the fact that fullerenes seem not to produce these ROS, with the targets likely being proteins rather than lipid membranes (Lyon et al. 2008a, b). Other, possible direct biophysical or chemical interactions at the NP-bio interface (e.g. hydrodynamic, electrodynamic, steric and polymer-bridging interactions) are less well known (see review; Nel et al. 2009).

Damage to the cell wall components may be prevented or delayed when the cell surface is coated by exopolymers like excreted polysaccharides (Neal 2008). These exopolymers represent a mechanical barrier to MNMs. However, once the cell wall components are damaged, the mechanical defenses would be largely lost, and MNM movement across the inner cell membrane is possible. Whether endocytotic uptake of MNMs into the cell represents a real alternative pathway is unknown. However, the recent report that endocytosis, a widely distributed process among eukaryotes, also occurs in the Planctomycete species Gemmata obscuriglobus (Lonhienne et al. 2010) may indicate that it is possible. Moreover, if so, then this path of MNM uptake may also occur in other deeply branching phyla (Forterre and Gribaldo 2010; Santarella-Mellwig et al. 2010). Once inside the bacterial cell, the NPs would have the opportunity to interact with cytoplasmic molecules (e.g. lipids, proteins, DNA), such as those evidenced by the formation of a NP-protein corona on the surface of particles (Cedervall et al. 2007), ultimately leading to the loss of structural and functional integrity of the cytoplasmic biomolecules (Nel et al. 2009), which represent the final stages of prokaryotic cell death. Clearly, oxidative damage or other biochemical changes in the cell envelope of microbes could form the basis of new ecotoxicity assay for MNMs.

An alternative mode of antimicrobial action is provided by the release of ions from metal-containing MNMs, in particular nano-Ag. Ag⁺ is likely to penetrate the cell wall via ion channels due to its small size and hydrophilic character, without damaging cell membranes (Yamanaka et al. 2005). Silver ions have been shown to bind to the thiol groups of enzymes (and possibly to DNA) leading to defective bacterial metabolism. In particular, the expression of enzymes required for ATP production are altered, resulting eventually in cell death (Uchida et al. 2003; Yamanaka et al. 2005). The toxicity of oxidised silver ions (i.e. Ag⁺ ions) has been experimentally demonstrated by comparison of oxidised Ag NPs to those that were synthesised under reducing (H₂-atmosphere) conditions (Fang et al. 2007). Thus the antimicrobial action of MNMs identified so far include (Lyon and Alvarez 2008), (i) ROS generation from metal oxides, (ii) ROS-independent protein oxidation (mediated by fullerenes) followed by loss of membrane potential (only detected in Gram-positive bacteria) and cellular respiration and (iii) the leaching of metal ions into the cell via dissolution of metals from NPs at the surface of the organism.

Modifying current OECD guidelines involve microorganisms for MNMs

The validity of the current tests (Table 2; Crane et al. 2008) will depend on whether there is a logical mechanistic reason for the MNM interacting with the microbe in a way that will generate a change in the measured end point in the test. For some tests, this is clearly not the case. For example, similar to conventional dissolved metals, the biodegradability tests are not likely to be relevant to elemental MNMs, but it is also unclear on how (or if) carbon-based MNMs can be degraded by microbes. Furthermore, if the main modes of bacterial toxicity of MNMs involve attack of the cell wall components (see above), then some tests that involve intracellular mechanisms (e.g. Ames test) may be less sensitive than expected for MNMs. Except perhaps in the case of metal ion release from metal-NPs, where mutagenic effects may occur via direct association of the metal cation with the negatively charged DNA, or indirectly through inhibition of enzymatic functions involved in (for example) DNA repair. However, such an effect has not yet been reported.

In contrast, soil or sediment tests that involve some aspects of bacterial metabolism/measurements of enzyme activity in soil may be more versatile. For example, net changes in soil enzyme activity could be mediated through alterations in cellular activity or in the total number of cells in the sample. Therefore these tests should also include a component that measures microbial biomass (e.g. ISO 1997a; ISO 1997b), but even this will not account for environmentally relevant changes in the biodiversity of microbial communities (see below). Metabolic and physiological aspects of microbes are under utilized in the current testing regime, and given the potential interaction of MNMs with cell walls and membranes, a test based on changes in bacterial membrane potential would be a valuable contribution to current tests. Oxidative stress end points could also be utilized to measure the oxidation of lipids and proteins, either via ROS-mediated or ROS-independent pathways, or the direct action of metal ions on the thiol groups of proteins inside the cell (e.g. Ag⁺). Such assays are already applied in fundamental research with microbial cultures in the laboratory (e.g. Lyon and Alvarez 2008; Lok et al. 2006), and it would be a small step to modify these assays to work with soil samples, or indeed to extract the microbes from the soil using physical and chemical approaches (e.g. Kowalchuk et al. 2004) prior to applying the assays.

New approaches to testing microbial responses to MNMs

In the long-term, new, additional tests that utilise novel information on the cellular response of microorganisms specific to their contact with MNM may become feasible. A possible approach, for example, could include assessment of quantitative changes in the expression of genes associated with the cell wall, or profiles of genes representative of the cellular response of the whole microbial community in a sample. First examples of potential cellular responses at the molecular level stimulated by the treatment with Ag NPs are provided by Lok et al. (2006), while Yamanaka et al. (2005) present results from similar proteomic studies, except that cells were treated with Ag⁺ instead of NPs (see above). The findings from the proteomic analyses of the response to Ag NPs which indicate an increased expression of, among others, genes coding for outer membrane protein precursors was further corroborated by physiological assays that revealed destabilisation of the outer membrane, collapsing of the plasma membrane potential and depletion of the levels of intracellular ATP (Lok et al. 2006).

Changes in microbial community structure may also be environmentally relevant, but the vast diversity of prokaryotes cannot be cultured in the laboratory, despite sophisticated isolation techniques (e.g. Joint et al. 2010). Many important groups of microbes are not represented in the suite of current regulatory tests, but fundamental molecular research has provided a way forward. Shifts in the microbial composition in natural samples may occur during exposure to MNMs, and this can only be evaluated using molecular techniques involving DNA extractions from the soil/sediment sample (e.g. Bradford et al. 2009). These investigations are labour-intensive and are usually only undertaken in the course of academic research, but nevertheless, reveal important insights into microbial biodiversity that cannot be provided by any of the other tests. For example, a simple enzymatic test may show similar activities in test and control samples, although the composition in the microbial community may have changed. Such a scenario is feasible with chronic exposure to antimicrobial MNMs where long-term exposure ultimately leads to the selection of resistant cells. If those resistant cells then replace cells that have been inhibited by MNM exposure, then no overall effect in the enzymatic test may be detected.

In addition, measures of resistance that reflect the co-localisation or expression of more than one gene may be especially useful. For example, it is now clear that metal-contaminated sediments from marine harbours contain microbes with increased antibiotic resistance (e.g. Baker-Austin et al. 2006). This occurs in the absence of any appreciable antibiotic pollution at these sites, and arises because the genes for resistance to antibiotics are often incidentally co-selected with those for metal resistance. Both sets of genes are often encoded on the same plasmid (e.g. Hernández et al. 1998). Metal contaminated soils have been found to contain more plasmids than uncontaminated soils (Rasmussen and Sorensen 1998). Furthermore, the linkage of these genes on plasmids allows them to be transferred to other cells via horizontal gene transfer, thus facilitating the spreading of both resistance patterns despite the presence of only one selective pressure. Therefore, tests of co-selection for antibiotic resistance (Mühling et al. 2009) may also be useful for metal-containing MNMs.

Up to now, all of the studies into potential changes in microbial diversity caused by the exposure to MNMs have used genetic fingerprint techniques (e.g. denaturing gradient gel electrophoresis, DGGE: Tong et al. 2007; Bradford et al. 2009) that provide only a limited genetic resolution. However, recent advances in modern high-throughput sequencing techniques (e.g. 16S-tag pyrosequencing: Gilbert et al. 2010) and the use of group-specific PCR primers (e.g. Mühling et al. 2008) now allow targeted and in-depth analyses of shifts in the composition of the microbial communities upon MNM exposure and should be applied to future investigations. However in the scramble to use new molecular technology, one must not lose sight of the most important prerequisite for the development of standardised tests involving molecular techniques; that is the reproducible isolation of total environmental nucleic acids (DNA, RNA) from the soil sample. Fortunately, details of appropriate methods are available in laboratory manuals (e.g. Kowalchuk et al. 2004), and those have been shown to work for the extraction of high quality environmental DNA from soil and sediments (e.g. marine sediments, Bradford et al. 2009).

Environment conditions during experiments and taxa specific issues with MNMs

The question of whether or not aged soils or MNMs (discussed above) will interfere or alter the results of microbial tests is currently unclear. In the case of the assays involving environmental samples consideration must be given to details describing the status of the environment in which the MNM pollution is likely to occur. For example, Ag NPs proved to be antimicrobial under toxic conditions, while the same size of Ag NPs that were produced and tested against microorganisms under a reducing atmosphere (N₂ atmosphere) resulted in no detectable toxicity (Lok et al. 2007). Apart from the reducing effects on metal-NPs the exclusion of oxygen should also result in a lower likelihood of damaging cells through ROS. Such environments that are characterised by anoxic reducing conditions represent likely sinks in which NPs may well accumulate (e.g. in the anoxic sediments of aquatic environments including water reservoirs, lakes, rivers and estuaries; see Klaine et al. 2008).

Moreover, the OECD guidance manual for the testing of MNMs indicates that if the substance is expected to partition into the soil, then microbial toxicity testing relating to nitrogen fixation or carbon transformation may be necessary. It also indicates that the impact of MNMs to anaerobic microorganisms should be considered (OECD 2000). Therefore, standardised tests of representative microbial activities under anoxic conditions (e.g. denitrification, dissimilatory sulphate reduction, methane production, dissimilatory metal reduction) need to be developed; and if tests are to be carried out on representative isolates, these need to be defined. Currently, the only available OECD test that involves anaerobic microorganisms evaluates inhibition of their metabolic activity by measuring the reduction of gas production from anaerobically digesting (sewage) sludge (OECD Test No. 224). In this context it should be noted that methane production is performed by microorganisms that are not specifically included in any of the regulatory tests: the Archaea. These organisms are responsible for all of the methane production and also contribute to other globally important metabolic services. As outlined above, Archaea may be affected in a different way by MNMs as compared to Bacteria due to differences in the composition of their cell wall. Therefore, future research should include the analysis of the impact of MNMs on Archaea and the development of standardised test(s) for anaerobic microorganisms, as well as aerobic and anaerobic strains of the Archaea.

Representative soils for microbial tests

In addition to the experimental design issues discussed above for soil tests with invertebrates and plants, natural variation in the soil composition and even seasonal changes in the same soil, can have a dramatic effect on microbial activity and/or diversity. The use of reference soils are therefore also recommended for microbial tests. These can be sterilised and then inoculated with a defined test microorganism(s), so at least the microbial composition of the soil is bench marked at the start of an experiment. The soil parameters that are particularly crucial to control or monitor for microbial tests (in addition to organic nutrients, clays etc., above) are the water and oxygen content, the redox potential and the pH. Nanomaterials that generate ROS are likely to alter the latter three parameters. Interestingly, the natural diversity and richness of soil bacterial communities differ by ecosystem type and these differences appear to be largely explained by soil pH (Fierer and Jackson 2006). Storage of sterile soil samples can be conducted at +4°C for up to 4 weeks, or longer if performed at −20°C (see ISO 1993). The replication issues are also similar to above on soil invertebrates. Notably, despite the much higher microbial diversity in soils (e.g. Curtis et al. 2002), a triplicated design also seems to work for sets of individual natural marine sediment samples (i.e. not from a defined artificial test matrix, e.g. Bradford et al. 2009).

Abiotic factors and MNMs in algal tests

The composition of the test media is standardised with respect to ionic composition, but there is a conflict for MNMs. The salts in the media ensures that the algae are not nutritionally limited for growth (the main end point), but the same salts will promote NP aggregation and therefore removal of the test substance from the water column. The OECD 201 algal growth test growth includes 18 mg l⁻¹ CaCl₂ and 15 mg l⁻¹ MgSO₄, these cations will promote aggregation by charge screening on the electric double layer (for example) but without these nutrients the algae will not grow well. Critically, unlike toxicity tests with animals, the algae obtain all their minerals from the water and for MNM exposures there is no option of removing these minerals; although Navarro et al. (2008a) have suggested reducing the mineral content. Algae also produce exudates containing macromolecules and mucous-like proteins (Soldo et al. 2005) which may promote agglomeration of the test material. Alternatively, small organic macromolecules could coat the NPs to provide more stable dispersions than expected. The key point is that the release of exudates is likely a much bigger problem for MNM experiments compared to traditional chemicals, and the experimenter has little control over this for maintaining the exposure. For metal-based MNMs, the precise composition of the algal media will influence dissolution rates, and the bioavailability of dissolved metal ions in the solution. Dynamic changes in particle number and particle size distribution are therefore expected, and pragmatically one can attempt to measure MNM behaviour in the test media frequently during the experiment. These issue are well documented in a recent study by Hartmann et al. (2009) using three different sizes of TiO₂ NPs. Establishing a concentration–response relationship for the three particle sizes was difficult, and the reproducibility of the exposures was influenced by the concentration-dependent aggregation of the NPs, and their sedimentation and sorption to test vessels, as well as the effects of exopolymeric exudates.

The presence of MNM aggregates in algal experiments deserves particular attention because this will influence light penetration into the media, photosynthesis and therefore growth. Lighting regimes are well known to alter algal growth tests (Cleuvers and Weyers 2003), but the specific problem for MNM experiments is to include a control for light scattering or shading effects. Researchers have used two-compartment vessels to physically separate the MNMs from the algae, and illuminated the cultures from the side containing the MNM suspension. This method has been used to assess growth inhibition of TiO₂ NPs and shading effects were limited or absent even with larger sized aggregates (Aruoja et al. 2009; Hartmann et al. 2009; Hund-Rinke and Simon 2006). However, the possibility that MNMs could precipitate and cover the surface of the algae, or shade the entire dispersion cannot be excluded (Aruoja et al. 2009). In addition, MNMs on the surface of the algae or in the suspension could alter nutrient availability or induce other physical effects on algal growth (Hartmann et al. 2009). One possible amendment to protocols could be to increase the light intensity, and is already recommended in tests to assess the toxicity of coloured substances to algae (Cleuvers and Weyers 2003). Effects of MNM aggregates on algal assays have also been associated with other indirect effects. Sorption of TiO₂ NPs to algae resulted in a 2.3-fold increase of cellular weight (Huang et al. 2005), potentially confounding biomass measurements. Similarly, aggregates of carbon black adsorbed to sperm cells reduced fertilization success of the marine seaweed Fucus serratus, mainly due to physical effects (Nielsen et al. 2008).

End points in studies with primary producers and MNMs

Most studies examining the effects of MNMs on primary producers, so far, have reported concentrations that inhibit growth and/or photosynthesis in mainly freshwater algae (see review; Kahru and Dubourguier 2010) and in some marine algae (Miao et al. 2009; Wei et al. 2010). The current state of knowledge does not allow any firm conclusions on the mechanisms leading to growth inhibition for any type of MNM and there is a clear need to explore a variety of additional variables including molecular, biochemical and physiological end points, as well as structural/cytological end points. For instance, measurements of glutathione in a study with functionalised multiwalled carbon nanotubes (f-MWCN) suggested oxidative stress occurred in the marine algae, Dunaliella tertiolecta (Wei et al. 2010). In the case of TiO₂ NPs, toxicity to algal growth has been suggested to result from particle adhesion to algal cells, with disruption of the cell wall and/or the formation of ROS (Hartmann et al. 2009), but these hypothetical mechanisms remain to be examined. The use of fluorescence techniques, including staining with fluorochromes specific for cellular structures combined with detection by flow cytometry, or exploring specific cellular constituents (e.g. intracellular Ca spikes measured with FURA-2) by fluorescence microscopy, are promising approaches to provide mechanistic information. Such experiments would need to include blanks to assess the interference of the MNMs with each fluorescent probe, and dye calibrations spiked with the appropriate MNM.

Morphological observations using light microscopy should also be performed in algal experiments with MNMs to examine effects on cell shape, cytology and the integrity of the cell wall. These observations can simply be qualitative to indicate the potential effects or type of exposure to the MNM. For instance, microscopic observations have indicated cellular structural changes in the green algae Chlamydomonas reinhardtii exposed to silver NPs that are distinct from those elicited by dissolved silver ions, suggesting nano-specific effects (Behra, unpublished results). Morphological observations on cells can also be quantitative to enable statistical analysis of the data.

Currently, it is unclear if MNMs can be internalised by algae and plant cells. Similar to the situation described above for microbes, plant and algal cells also have a polyanionic cell wall (consisting of cellulose, glycoproteins and polysaccharides) that constitutes a barrier to the internalization of MNMs. It is also a primary site of interaction with particles (Navarro et al. 2008b). The diameter of pores across algal cell walls have a size ranging from 5 to 20 nm, and determines their selective properties; allowing the passage of small molecules while limiting the passage of larger ones (Fleischer et al. 1999; Zemke-White et al. 2000). Consequently, only primary particles or agglomerates with a size smaller than the pores are expected to pass through the cell wall and reach the plasma membrane (Navarro et al. 2008b). Permeability of the cell wall might change during reproduction with the newly synthesised cell wall being more permeable to MNMs, suggesting that growth (involving cell divisions) should be a sensitive end point for these materials. Like microbes, damage to the cell wall will facilitate particle internalisation, and one might therefore expect threshold effects on biochemical end points that rely on the MNM being inside the cell.

Tests with invertebrates in aquatic media

Aqueous tests can be conducted without renewal (static tests), or with daily renewal (semi-static) of the test media. Using current OECD protocols, exposure vessels for aquatic invertebrate tests are not stirred or shaken (unlike the algal tests). It is therefore inevitable that some settling of the MNM will occur with the current protocols. It is possible to gently stir beakers of invertebrates, or to create some mixing of the media with aeration. This may be appropriate to some marine and river invertebrates where they might normally experience significant water movement in their natural habitats. However, for organisms that live in still waters like the water flea, Daphnia magna, or the larval stages of chronomids, there is a risk of mechanical damage to the delicate structures (chaetae, sense organs, etc.) on the surface of the animals. Careful experiments remain to be done to define what level of mixing/aeration can be achieved in beakers of invertebrates to improve dispersion of the MNM without causing stress to the test organisms.

The Daphnia immobilisation test is a widely used acute toxicity test (OECD test 202, Table 1), but there are some issues with using immobilisation as an end point with MNMs. It is possible that the physical effect of MNMs sticking to the carapace and appendages of the Daphnia could result in restricting the movements of the animals (false positive on the immobility end point; Rosenkranz et al. 2009; Gaiser et al. 2011) when MNM concentrations are very high (e.g. mg l⁻¹ levels). However, there is also a toxicological feature to these effects in Daphnia species. They ventilate by movement of the appendages to create a flow of water over the respiratory surface. If this movement is stopped, then toxicity by suffocation is possible. Roberts et al. (2007) demonstrated that mg l⁻¹ concentrations of lysophophatidylcholine coated single-walled carbon nanotubes could adhere to Daphnia magna and cause abnormal swimming where the animals would sink to the bottom of the test containers. One interpretation of this phenomenon is to simply allow it occur during the test, and regard it as a “non-chemical method” of producing the immobilisation end point. A “particle control” for the mechanical effects of MNMs might be needed, but exactly how this could be done is unclear at present.

Another concern is whether or not to feed invertebrates during ecotoxicity experiments with MNMs. Many invertebrate cultures are feed on unicellular algae, or other particulate food material. For short tests lasting only a few days, it is simply a matter of not feeding the test organisms. This is, for example, the standard procedure for acute Daphnia test (48 h duration; OECD 202). This is not the case, in longer tests such as the Daphnia reproduction test (e.g. OECD 211) which lasts 21 days. In such experiments, it is an essential husbandry requirement to feed the test organisms. Clearly, any food particles added to the media will interfere with attempts to measure the size distribution of the MNM being tested. A simple modification of protocols can avoid this problem, for example, by feeding the animals for a few minutes before a water change, and renewal of the test media immediately after the animals have fed. There are also some scientific concerns about the exposure in the presence of food particles. At least one report confirms that the uptake of MNMs by Daphnids can be quite different in presence of food particles, comparing to exposures taking place in the absence of food (TiO₂ NPs, Zhu et al. 2010). This is perhaps not surprising, since aquatic invertebrates will often increase the processing of water over their body surface to extract any food when it is present, and the food particles will also act as a surface for agglomeration of the test material. Both of these processes might increase exposure of the test organism, but how this might alter the outcome of a reproduction test (for example) is unclear. Critically, invertebrate studies are reporting apparent MNM accumulation in the organism, when in fact it is simply ingested material present in the gut lumen. The correct use of terminology is required. For example, for kinetic flux studies the net uptake is usually defined as the net transfer of the substance from the external environment to the systemic circulation of the animal. Accumulation occurs when the steady state unidirectional influx exceeds the efflux, and thus refers to the internal compartments of the animal only. The gut lumen contents represent the ingested dose not the accumulated body burden. Experimentally, even if animals are depurated of gut contents or rinsed in clean water, the measured concentration for the whole body may include a surface-bound component (adsorption rather than true uptake). If the methodology is carefully reported, one can at least correctly interpret whole body measurements.

Tests with invertebrates in aquatic sediments

Most of the issues described above for measuring MNMs in soils, and the inability to routinely track MNMs in the exposure media, equally applies to sediment tests with invertebrates. Consider the OECD sediment tests using Chironomus species, non-biting midges (OECD 223), and Lumbriculus variegatus, a freshwater oligochaete (OCED 225, see Table 1). In the chironomid tests and the Lumbriculus test, the current protocols allow directing spiking of the sediment; with all the issues or how to achieve representative mixing as described for soils (Table 4). The aim of spiking the sediment with the test material is the same as that in setting up a soil test; to evenly mix the test MNM throughout the sediment sample, and do this in a way that minimises variability between replicates of each concentration of MNM. However, in the chironomid tests it is also possible to spike the overlying water. The approach of spiking the water may be more environmentally relevant, and such spiking methods can give a consistent coating of the MNM being tested on the surface layers of the sediment, especially if the test material rapidly settles out of the water phase (e.g. Bradford et al. 2009). In all these sediment tests it is permissible to use natural sediments and/or waters “for specific testing purposes”. Similar to the soil tests and some of the microbial tests, there is a vast range of natural sediments (marine to freshwater) with very different compositions (percent of sand, clay, organic matter etc.). An artificial sediment might therefore be used for “bench marking” while a consensus view on the effects of sediment type on nanotoxicity is emerging, and further standardisation of the mixing/dosing of sediments with MNMs is evaluated.

Dosing of the sediment, or overlying water, will be subject to all the experimental design issues discussed above for soils with no-added MNM controls, dispersion controls where dispersing agents are used, bulk material controls and/or metal salt controls as appropriate to the material being tested. The Lumbriculus test runs over 28 days, and the chironomid tests can be up to 100 days. The issue of MNM ageing or modification identified above for soil tests also applies to sediment tests. Similar to soil tests, it remains impractical to renew the test sediment to prevent MNM modification, or to maintain exposure during the test, although it is possible to refresh the overlying water in a sediment test. If food is added to the overlying water, similar to aquatic tests, this could be done just prior to water changes, although it is inevitable that material will settle onto the surface of the sediment. In the Lumbriculus test, it is common practice to mix food into the sediment, when the test chambers are initially prepared. This method is also practical for MNMs. The end points of the Lumbriculus test are biomass and the total number of worms per replicate. Optionally, reproduction (as increase of worm numbers) and growth (as increase of dry biomass) can also be evaluated, in relation to the initial values. Mortality may also be recorded. There is currently no evidence that these current end points are inappropriate for tests with MNMs. the mixing protocol for MNMs in both sediment and soil tests is needed for regulatory tests.

Animal husbandry in experiments with MNMs

There are some particular animal husbandry problems with setting up fish tests that are specific to MNMs. Trout, for example, are especially sensitive to ammonia or low oxygen levels, and for this reason, researchers might prefer to use flow-through methods from the view point of animal husbandry. However, this approach would also generate lots of waste water (e.g. hazardous waste in the case of CNTs in the UK), and so semi-static exposures are preferred for MNMs (Federici et al. 2007; Smith et al. 2007). Animal husbandry also requires that the animals can be easily observed every day, and the semi-static methods also allows close observation of the animals in situations where the MNM may also discolour the water (e.g. very dark water from high concentrations of C₆₀). Increases in aggressive behaviours have also been noted in trout during MNM exposures after about 5 or 6 days (TiO₂ Federici et al. 2007; SWCNT, Smith et al. 2007). This problem is not likely to be an animal husbandry issue for acute tests lasting only a few days, but can be in 14 day or longer experiments. Feeding can reduce aggression and current regulatory protocols that exclude feeding (i.e. experiments with unfed fish) should be reconsidered to address this problem for MNMs. A single short feed with a maintenance ration (2% of body mass) immediately after the water change can reduce aggression without compromising water quality (Smith et al. 2007). Aggression can result in mortalities, and this is therefore an important husbandry issue, especially for CNTs (Smith et al. 2007). Also, exclude apparatus from the tank that can become the focus of aggressive behaviours, such as air stones that can be bitten by the fish (also releasing particles into the water in the process).

Ethical considerations require experimental replication (i.e. the use of animals) to be carefully considered. Traditionally, regulatory tests have used pseudo-replication (one tank/treatment), but this must be balanced against the particular problem of maintaining MNM dispersions, and the possibility that between-tank variability with some MNMs will inevitably be greater than conventional soluble chemicals. Measurements from very carefully controlled triplicate tanks in semi-static tests with trout show that the replication was good, enabling (in theory) the pooling of the data within triplicates for statistical analysis where the individual fish are also can be identified (e.g. Federici et al. 2007). However, it would be prudent to judge this on a case by case basis with each MNM until a weight of evidence is available to confirm whether or not pseudo-replication is “adequate” for a regulatory test, and whether this will remain ethically acceptable.

Maintaining exposure in fish tests with MNMs

Unlike many of the algal and invertebrate tests, fish can produce large quantities of mucus when irritated by chemicals in the water column (see Handy and Maunder 2009 for a review of fish mucus). MNMs readily form aggregates/agglomerates with fish mucus components (e.g. SWCNT, Smith et al. 2007), which inevitably remove the test material from the water column, and deposits clumps of MNM-contaminated mucus on the bottom of the tank (which the fish may then ingest). The semi-static exposure method can ensure these clumps are siphoned off with regular water changes, and the test water renewed. This semi-static renewal of test water involves some labour, but is achievable over experiments lasting a couple of weeks. The prospect of doing at least twice daily water changes for longer (e.g. a month) for a chronic fish test is not ideal from a logistics view point, but it is possible to use this method to maintain exposures via the water for many weeks. For experiments with fish larvae and embryos, and small fish such as zebrafish, experience has shown that the problems of mucus production and loss of the test material are less important; and it may be possible to limit water changes to once a day.

Ames test

In regulatory toxicology the most commonly used genotoxicity assay is the prokaryotic point mutation Ames test, a bacterial reversion mutation test (Mortelmans and Zeiger 2000). The test involves using bacterial strains with a gene mutation for histidine synthesis. The bacteria cannot grow in histidine minimal (i.e. histidine deficient) agar media. After treatment of the bacteria with mutagenic compounds, reverse mutations in the histidine gene can occur enabling the bacteria to synthesise histidine and thus grow and form colonies in the minimal histidine media. The Salmonella/microsome Ames test has been used to assess the genotoxicity of several MNMs, including C₆₀ fullerenes (Mori et al. 2006; Shinohara et al. 2009), MWCNT (Szendi and Varga 2008; Di Sotto et al. 2009; Wirnitzer et al. 2009), aluminium oxide NMs (Balasubramanyam et al. 2010), iron-platinum nano composites (Maenosono et al. 2007, 2009), ZnO NPs (Yoshida et al. 2009), and various NPs generated as combustion by-products (Miraglia et al. 2005). However, there are a number of concerns as to why the Ames test may not be appropriate for MNMs. First, the basis of the test is that the genetic material inside the organism is exposed to the test substance. For the reasons outlined above on microbes, many MNMs may not cross the cell wall, and therefore will produce false negatives in the test. In addition, the agar media (polyanionic) may prevent the migration of positively charged MNMs, also producing false negatives in the test. It is also unknown how MNMs will alter amino acid metabolism in bacteria, and one should not assume that histidine synthesis will occur normally (down regulation, false negative; up regulation, false positive). It is therefore perhaps not surprising that the Ames test has, so far, produced largely negative results (no effect) for MNMs (Landsiedel et al. 2009), despite the fact that in principle, MNMs could interact with bacterial DNA (An et al. 2010). Given the risk of false negatives, the Ames test should not be used alone as a critical tool in the decision making on hazard, but should always be considered in context with the results of other genotoxicity assays.

Single cell gel electrophoresis (Comet assay) and other techniques to measure DNA strand breaks

Single cell gel electrophoresis, or the comet assay, has been used extensively to evaluate direct as well as oxidative DNA damage (Collins et al. 1996; Dušinská and Collins 1996; Reeves et al. 2008; Vevers and Jha 2008). The assay detects DNA damage at the level of a single cell. Under alkaline conditions, DNA breaks are relaxed from super coiling; and following electrophoresis ‘comet tails’ are formed from the DNA fragments. The assay can measure the general magnitude of the strand breaks (size/shape of the comet tail), as well as specific DNA lesions. The latter is determined by incubating the nuclei embedded in agarose with (for example) lesion specific bacterial endonucleases III (endo III), or formamidopyrimidine DNA glycosylase (Fpg). Fpg recognises oxidatively modified purine bases, and thus can be used to detect oxidative DNA damage (Collins et al. 1996; Dušinská and Collins 1996). The issue of MNMs interfering with the properties of the agarose gel during electrophoresis is being investigated (Dušinská, personal communication), because of a theoretical possibility of false positives if the MNM causes the DNA fragments to aggregate, or in some other way slows the migration of fragments in the agarose gel. However, this concern is only theoretical, and researchers at the bench are not reporting significant additional problems with the electrophoresis in MNM experiments so far. Interference of MNMs with any enzymes used for incubations should also be tested before starting the assay, by measuring enzyme activity in MNM-spiked solutions.

Some MNMs are photo-reactive, and the generation of ROS resulting ultimately in oxidative DNA damage, can be measured using the comet assay. Several authors have measured ROS generation (with/without UV activation) in cell culture systems that lend themselves to the comet assay (Reeves et al. 2008; Vevers and Jha 2008; Dodd and Jha 2009, 2011). The comet assay is currently being validated by ECVAM/JaCVAM and a draft guideline protocol for mammalian regulatory purposes is being developed for conventional chemicals, and within the OECD sponsorship programme for MNMs. Some of the advantages of this technique for conventional chemicals (rapid, sensitive, inexpensive, ability to study DNA repair and cell death in different cell types, see review, Jha 2008), are likely to apply to MNMs. However, the sensitivity and reliability of the assay needs establishing for MNMs incorporating some of the precautions suggested above.

Another assay to detect DNA strand breaks is DNA unwinding and hydroxylapatite chromatography (Dušinská and Slamenová 1992). This assay has been used for detection of DNA damage in mammalian cells, and in ecotoxicology (e.g. in pyloric caeca of the sea star Asterias rubens L., in fish RTG-2 cell line derived from rainbow trout (Oncorhynchus mykiss) gonadal tissue; Hansen et al. 2009). The technique is based on the time-dependent partial alkaline unwinding of DNA and determination of single and double stranded DNA using chromotography (Everaarts et al. 1998). Similarly, pulsed-field gel electrophoresis (PFGE) has been used for detection of double strand breaks in fish RTG-2 cells (Hansen et al. 2009). However, these DNA unwinding assays have not yet been applied to MNMs, although the issues relating to false negatives in electrophoresis gels and solid phases in chromatography will apply. Where chromatograph is used, the effects of the MNM on the solvent front, and capacity/binding/elution characteristics of the column should be tested using assay blanks (the MNM and no biological sample), and also reference material (e.g. DNA standards) with/without the MNM to ensure the chromatography column is working correctly.

Micronucleus assay

The Mn assay, and related chromosomal techniques, were originally developed for mammalian systems, and the more varied karyotypes of non-mammalian cells present an inherent technical difficulty for scoring chromosomes from the organisms used in ecotoxicology (Dixon et al. 2002; Jha 2004; Raisuddin and Jha 2004; Papis et al. 2011). For example, metaphase techniques such as sister chromatid exchanges and chromosomal aberrations are not practical methods for many aquatic species. However, it is possible to score cells from a few fish species for chromosomal aberrations in the laboratory. Recently, Wise et al. (2010) applied these methods to a cell line from the medaka (Oryzias latipes), and found that exposure to Ag NPs (30 nm primary particle size) could induce chromosomal aberrations and aneuploidy in the cells. Unfortunately, the fish and invertebrate species that have found some utility in the laboratory for karyotyping, have proven less useful in field situations (Dixon et al. 2002; Hooftman and de Raat 1982; Al-Sabti and Metcalfe 1995; Grisolia and Cordeiro 2000). As a consequence, the Mn assay, which only requires identification of DNA fragments outside the main nucleus of the cell (i.e. the micronuclei) and is easier to score, has found greater utility than more complicated karotyping. The Mn assay is widely used to assess genotoxic hazard and has shown potential for the in situ monitoring of water quality (Bolognesi and Hayashi 2011). Mn are formed during the anaphase of mitotic cell divisions from chromosomal fragments, or whole chromosomes, that are “left behind” when the nucleus divides. After the telophase, these fragments may not be included in the nuclei of daughter cells, and form single or multiple micronuclei in the cytoplasm (OECD 1997). The Mn test detects both clastogenic and aneugenic effects; and therefore allows the detection of genotoxicity for a wide range of compounds including MNMs. The nucleoplasmic bridge and binucleated cells formed during cell divisions in the assay provide an additional and complementary measure of chromosome rearrangement. The assay has been further developed with cytochalasin-B, a cytokinesis blocking agent that inhibits cell-division, giving an increased occurrence of binucleated cells in the preparation, and thus increasing the sensitivity of the assay in terms of the number of potential Mn that may subsequently form, and the ability to visualise chromosomes more easily in the dividing nucleus. Differential staining methods (e.g. use of fluorescent acridine orange) have also been employed in an attempt to increase sensitivity of the Mn assay, as well as to differentiate between young and mature erythrocytes in fish species (see Jha 2008). Such methods can now be routinely used for measuring chromosome breakage, impairment in DNA repair, chromosome loss, nondisjunction, necrosis, apoptosis and cytostasis in cells (Fenech 2007). The Mn assay can be applied in different target tissues such as erythrocyte, gills, kidneys and livers of fish under laboratory and field conditions (Williams and Metcalfe 1992; Hayashi et al. 1998; De Flora et al. 1993; Klingerman 1982; Mersch and Beauvais 1997), and therefore offers flexibility in the testing regime while the target organs for different MNMs are being established. Scoring the Mn present in blood cells from aquatic species requires some care with MNMs in order to avoid false positives. For example, the presence of virus particles, or damage to the nucleus associated with infection that could be mistaken for Mn from MNM exposure; such as erythrocytic necrosis in fish cells and similar conditions in the haemocytes of bivalves (Dixon et al. 2002). The observer should also be familiar with the morphology of the MNM being tested, and the types of aggregates or agglomerates that may form, in order to reduce the risk of falsely identifying MNM aggregates as Mn fragments. The latter can be avoided by using histological staining to positively identify nucleic acids.

Overall, the most promising assays for nano ecogenotoxicology testing in vitro seems to be Mn and comet assays, but identifying the most sensitive species and cell type for these assays remain to be established for most MNMs. In addition, the relative risk of nano genotoxicity in human/mammalian systems compared to wildlife is unclear, and cross-species comparisons of mammalian, fish and invertebrate cells in each assay are required. A range of cell types from different organs should also be used while the target organs for MNM toxicity are being established. In vitro assays using cells or cell cultures of MNMs should incorporate similar controls to in vivo experiments (dispersion controls, positive controls, nearest equivalent conventional chemical for bench marking), but current experiments have often used high μg or mg concentrations of MNMs and concentrations need to be reduced to reflect the likely low μg or ng circulating levels of MNMs inside organisms.