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FLOWViZ

Setup

To setup FLOWViZ, the flowviz_setup.sh script can be used.

Run the script with the following command (inside the scripts directory):

./flowviz_setup.sh

It creates the FLOWViZ directory and clones the repository into it, and then, as the script itself tells you, it will only execute steps 1 to 3 of the manual setup that is present here: https://github.com/devandrepascoa/FLOWViZ?tab=readme-ov-file#manual-setup

After running flowviz_setup.sh, you still need to execute steps 4 to 7 of the manual setup.

Clean up

To clean up the setup, the flowviz_cleanup.sh script can be used.

Run the script with the following command (inside the scripts directory):

./flowviz_cleanup.sh

It will remove the FLOWViZ directory and all its contents, after having destroyed any running containers.

PhyloDB

Setup

To setup PhyloDB, the phyloDB_setup.sh script can be used.

Run the script with the following command (inside the scripts directory):

./phyloDB_setup.sh

It creates the PhyloDB directory and clones the repository into it, then launches the PhyloDB containers.

Clean up

To clean up the setup, the phyloDB_cleanup.sh script can be used.

Run the script with the following command (inside the scripts directory):

./phyloDB_cleanup.sh

It will remove the PhyloDB directory and all its contents, after having destroyed any running containers.