man/prepare_cluster_markers_list.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/prepare_cluster_markers_list.R
\name{prepare_cluster_markers_list}
\alias{prepare_cluster_markers_list}
\title{Prepare cluster markers list
Prepare cluster markers list for inter_dataset_comparison}
\usage{
prepare_cluster_markers_list(
  marker_table_list = NULL,
  effect_size = "avg_log2FC",
  effect_size_thr = 0.25,
  sig_column = "p_val_adj",
  sig_thr = 0.1,
  id_column = "gene",
  cluster = "cluster",
  top = 500
)
}
\arguments{
\item{marker_table_list}{list of marker tables, as produced by Seurat::FindAllMarkers}

\item{effect_size}{name of effect size column}

\item{effect_size_thr}{threshold over effect size}

\item{sig_column}{column with significance score}

\item{sig_thr}{threshold over effect significance score}

\item{id_column}{column with IDs}

\item{cluster}{column with cell cluster}

\item{top}{maximum number of markers per cluster}
}
\description{
Prepare cluster markers list
Prepare cluster markers list for inter_dataset_comparison
}