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cluster_csea.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/cluster_csea.R
\name{cluster_csea}
\alias{cluster_csea}
\title{Calculate cluster enrichment by means of CSEA}
\usage{
cluster_csea(
feature_values = NULL,
cell_clusters = NULL,
min.cells.feature = 100,
min.cells.cluster = 10,
mc.cores = 1,
csea.k = 99,
min.k = 10,
fract_min = 0.2
)
}
\arguments{
\item{feature_values}{matrix, features by cells matrix}
\item{cell_clusters}{array with cell values named by their cluster ID}
\item{min.cells.feature}{minimum number of cells in which a feature must have value}
\item{min.cells.cluster}{minimum number of cells of a cluster}
\item{mc.cores}{number of cores}
\item{csea.k}{number of permutations}
\item{min.k}{minimum number of valid permutations to support empirical nulls}
\item{fract_min}{only cluster of size less or equal to this fraction of cell with not null feature values will be analysed}
}
\value{
list with two elements: gs_table and leading_edge. See [csea()]
}
\description{
Calculate cluster enrichment by csea approach
}