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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 354 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 419 repositories
  • deep-neurographs Public

    A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Mar 15, 2025
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 5 BSD-3-Clause 0 0 5 Updated Mar 15, 2025
  • TEM_comms Public

    Pigeon messages for the next generation TEM imaging system

    AllenInstitute/TEM_comms’s past year of commit activity
    Python 1 BSD-3-Clause 2 1 0 Updated Mar 15, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 290 13 Updated Mar 15, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 6 BSD-3-Clause 2 55 8 Updated Mar 15, 2025
  • pertpy Public Forked from scverse/pertpy

    Perturbation Analysis in the scverse ecosystem.

    AllenInstitute/pertpy’s past year of commit activity
    Python 0 MIT 27 0 0 Updated Mar 14, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 59 24 13 6 Updated Mar 14, 2025
  • load_behavior_video Public

    First step in behavior video QC pipeline. Loads attached videos, saves gray frames in zarr file, saves metadata.

    AllenInstitute/load_behavior_video’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 14, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Mar 14, 2025
  • motion_energy_PCA Public
    AllenInstitute/motion_energy_PCA’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 14, 2025
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