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0
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1.8k
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positive and negative Fold Change glmLRT test
RNA-Seq log2FC glmLRT differential-expression
updated 9 months ago by 44k • written 5.5 years ago by ▴ 270
29
votes
18
replies
24k
views
9 follow
Cleaning RNA-Seq data from rRNA
RNA-Seq rRNA cleaning QC
updated 2.4 years ago by ▴ 40 • written 8.6 years ago by ▴ 270
0
votes
2
replies
1.0k
views
Conserved regions in multiple fasta files (multiple species)?
fasta ClustalW Alignment
updated 19 months ago by 44k • written 2.9 years ago by ▴ 270
0
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2
replies
4.9k
views
How to calculate the AUC value for a ranger RF model ?
AUC value ranger randomForest classification
updated 3.2 years ago by • 0 • written 7.2 years ago by ▴ 270
3
votes
3
replies
994
views
from fasta to gtf format?
gtf DE fasta
updated 9 months ago by ▴ 230 • written 3.5 years ago by ▴ 270
0
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0
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1.3k
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Comment: C: different read names in paired-end data
3.6 years ago by debitboro ▴ 270
1
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3
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1.3k
views
different read names in paired-end data
fastq file read name header ABI-Solid
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 270
0
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3
replies
1.3k
views
prefetch and fast-dump problems?
prefetch SRA fastq-dump
updated 19 months ago by 44k • written 3.7 years ago by ▴ 270
0
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1
reply
1.3k
views
Answer: A: prefetch and fast-dump problems?
3.6 years ago by debitboro ▴ 270
0
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0
replies
657
views
tophat2 mapping fr-firststrand or fr-secondstrand ?
tophat2 fr-firststrand fr-secondstrand AB SOLiD
3.6 years ago by debitboro ▴ 270
0
votes
0
replies
885
views
cuffmerge gtf_to_sam error?
assembly cufflinks cuffmerge gtf_to_sam
3.7 years ago by debitboro ▴ 270
0
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0
replies
2.4k
views
How to get the normalized counts matrix EDASeq ?
RNA-Seq normalization within lane normalization
updated 3.8 years ago by ▴ 210 • written 7.6 years ago by ▴ 270
1
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1
reply
2.4k
views
Answer: A: WGCNA - what is it for
4.0 years ago by debitboro ▴ 270
0
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0
replies
475
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How can I adjust the Age of sample population?
age adjustment direct standardization
4.4 years ago by debitboro ▴ 270
2
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1
reply
3.1k
views
Answer: C: How to append two fastq files ?
5.0 years ago by debitboro ▴ 270
0
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1
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3.1k
views
Comment: C: How to append two fastq files ?
5.0 years ago by debitboro ▴ 270
0
votes
1
reply
3.1k
views
Comment: C: How to append two fastq files ?
5.0 years ago by debitboro ▴ 270
4
votes
8
replies
3.1k
views
How to append two fastq files ?
fastq RNA-Seq append merge
updated 2.2 years ago by ▴ 20 • written 5.0 years ago by ▴ 270
0
votes
1
reply
1.7k
views
sortMeRNA before or after adapters trimming ?
RNA-Seq rRNA sortMeRNA
updated 6.3 years ago by ★ 1.9k • written 6.6 years ago by ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: short RNA reads alignment
6.5 years ago by debitboro ▴ 270
0
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1
reply
4.3k
views
Comment: C: short RNA reads alignment
6.5 years ago by debitboro ▴ 270
1
vote
9
replies
3.5k
views
All my reads fall in intergenic regions ?
RNA-Seq count per biotype intergenic regions
updated 6.5 years ago by 9.0k • written 6.5 years ago by ▴ 270
0
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0
replies
3.5k
views
Comment: C: All my reads fall in intergenic regions ?
6.5 years ago by debitboro ▴ 270
0
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2
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3.5k
views
Comment: C: All my reads fall in intergenic regions ?
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 270
0
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2
replies
3.5k
views
Comment: C: All my reads fall in intergenic regions ?
6.5 years ago by debitboro ▴ 270
0
votes
0
replies
3.9k
views
Answer: A: How to calculate distribution of mapped read over classes of RNA?
6.5 years ago by debitboro ▴ 270
1
vote
0
replies
2.1k
views
Answer: A: Precision Medicine Bioinformatics: From raw genome and transcriptome data to cli
6.5 years ago by debitboro ▴ 270
0
votes
1
reply
4.2k
views
Questions about STAR and Bowtie (not Bowtie2) mapping
RNA-Seq STAR Bowtie uniquely mapped reads
updated 6.6 years ago by 44k • written 6.6 years ago by ▴ 270
0
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0
replies
4.3k
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Comment: A: short RNA reads alignment
6.6 years ago by debitboro ▴ 270
2
votes
12
replies
4.3k
views
short RNA reads alignment
RNA-Seq short reads alignment
6.6 years ago by debitboro ▴ 270
0
votes
1
reply
1.1k
views
Check variance stabilization transformation ?
RNA-Seq variance stabilization DESeq2
updated 6.6 years ago by 14k • written 6.6 years ago by ▴ 270
0
votes
2
replies
2.5k
views
WGNCA RNASeq without time series
time-series RNA-Seq WGCNA
updated 17 months ago by 44k • written 8.5 years ago by ▴ 270
0
votes
0
replies
1.5k
views
How can I get the OOB samples used for each tree in random forest model R?
randomForest OOB samples
6.9 years ago by debitboro ▴ 270
4
votes
3
replies
4.8k
views
Technical and Biological replicates
RNA-Seq technical replicates biological replicates
updated 6.9 years ago by ▴ 30 • written 8.5 years ago by ▴ 270
2
votes
1
reply
2.1k
views
ggplot expression values as function of samples and classes
ggplot miRNA expression classes
updated 7.2 years ago by 5.2k • written 7.2 years ago by ▴ 270
0
votes
8
replies
2.6k
views
Tophat2 mapping takes a lot of time
Tophat2 mapping Cluster
updated 7.4 years ago by 20 • written 8.5 years ago by ▴ 270
2
votes
1
reply
2.0k
views
Answer: A: Bug in RUV spike-in normalization?
7.4 years ago by debitboro ▴ 270
0
votes
0
replies
2.0k
views
ConsensusPathDB pathway enrichment analysis
Enrichemnt analysis ConsensusPathDB
7.4 years ago by debitboro ▴ 270
0
votes
1
reply
1.8k
views
How can I check for library composition bias RNA-seq data
library composition bias normalization RNA-seq
updated 7.5 years ago by ★ 2.1k • written 7.5 years ago by ▴ 270
0
votes
1
reply
24k
views
Comment: C: Cleaning RNA-Seq data from rRNA
7.5 years ago by debitboro ▴ 270
0
votes
1
reply
24k
views
Comment: C: Cleaning RNA-Seq data from rRNA
7.5 years ago by debitboro ▴ 270
0
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1
reply
3.8k
views
Comment: C: I get the same modules but different number of genes WGCNA
7.5 years ago by debitboro ▴ 270
0
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0
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3.8k
views
Comment: C: I get the same modules but different number of genes WGCNA
7.5 years ago by debitboro ▴ 270
2
votes
5
replies
3.8k
views
I get the same modules but different number of genes WGCNA
WGCNA Module genes geneModuleMembership
7.5 years ago by debitboro ▴ 270
0
votes
0
replies
1.8k
views
OOB error vs Cross Validation
random Forests Cross validation OOB error
7.6 years ago by debitboro ▴ 270
0
votes
1
reply
17k
views
Answer: A: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
7.6 years ago by debitboro ▴ 270
0
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0
replies
17k
views
Comment: C: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
7.6 years ago by debitboro ▴ 270
0
votes
1
reply
33k
views
Comment: C: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
7.6 years ago by debitboro ▴ 270
1
vote
2
replies
2.0k
views
positive control and negative control genes list
positive control genes DEGs
7.6 years ago by debitboro ▴ 270
1
vote
1
reply
6.2k
views
How can I get the normalized counts matrix after doing TMM normalization using edgeR
TMM CPM normalization
updated 7.6 years ago by ▴ 70 • written 7.8 years ago by ▴ 270
90 results • Page 1 of 2
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