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Showing top results for tag: vg • reset
0
votes
0
replies
90
views
(vg rna) some transcripts have multiple projections on haplotypes and abnormal length growth
vg
1 day ago by Wenhai • 0
0
votes
2
replies
302
views
Is it necessary to adjust genome to the same strand direction?
strand-direction vg
2 days ago by Yao ▴ 30
2
votes
4
replies
269
views
VG giraffe autoindex and alignement mapping warning "Refusing to perform too-large rescue alignment"
variant calling pangenome giraffe vg
2 days ago by s_135 ▴ 10
0
votes
2
replies
302
views
Identifying non-surjectable sites in a minigraph-cactus graph
vg
7 days ago by avril • 0
1
vote
2
replies
698
views
Question about various of graph format. How to get the sequence and source of a specific node?
vg
20 days ago by chuanj8848 • 0
0
votes
0
replies
164
views
fragment size estimation during vg mpmap and rpvg
vg
23 days ago by Juhyun • 0
0
votes
0
replies
188
views
Query regarding interpretation of VCF from variant calling (SVs) using vg giraffe workflow
pangenome giraffe vcf vg
22 days ago by s_135 ▴ 10
4
votes
2
replies
545
views
Query about vg (and vg giraffe) for pangenome creation and VC
pangenome giraffe vg
23 days ago by s_135 ▴ 10
2
votes
1
reply
290
views
Does vg provides an api?
cpp vg api
updated 28 days ago by ▴ 640 • written 28 days ago by ▴ 40
0
votes
0
replies
240
views
How to build a spliced pangenome graph and a pantranscriptome
vg
5 weeks ago by Wenhai • 0
1
vote
1
reply
591
views
VG Giraffe does not map reads < 39 bases
mapping variation-graph giraffe vg
updated 8 weeks ago by 44k • written 2.8 years ago by ▴ 10
2
votes
1
reply
390
views
which haplotypes were saved in .gbz file?
vg
updated 8 weeks ago by ▴ 450 • written 9 weeks ago by • 0
2
votes
3
replies
1.3k
views
GraphAligner/vg surject - alignment output nonsense?
vg-toolkit graphaligner vg vg-surject vgteam
updated 8 weeks ago by • 0 • written 18 months ago by ▴ 30
1
vote
1
reply
384
views
Converting vg and gfa files?
gfa pangenome vg graphs
updated 9 weeks ago by 6.8k • written 9 weeks ago by ▴ 40
0
votes
0
replies
210
views
VG: Get input file error
vg
updated 10 weeks ago by 164k • written 10 weeks ago by • 0
0
votes
1
reply
346
views
tag definations in GAF file produced by vg giraffe
vg
10 weeks ago by chuanj8848 • 0
1
vote
0
replies
236
views
How to generate a GAF that shows alignments to all component genomes in graph
pangenome minigraph vg minigraph-cactus
10 weeks ago by peterdfields ▴ 30
0
votes
3
replies
371
views
VG - Verifying presence or absence of variants in Pangenome Graph
mutation variant pangenome vcf vg
updated 10 weeks ago by ▴ 640 • written 10 weeks ago by • 0
1
vote
4
replies
1.2k
views
vg: How to find node Position and source(sample) ?
vg
12 weeks ago by zhang yi xing ▴ 20
0
votes
0
replies
178
views
vg autoindex (Variant with '.' among multiple alts being skipped)
vg
12 weeks ago by yixing • 0
4
votes
6
replies
633
views
advice for visualizing a graph genome constructed by "vg construct"
vg
11 weeks ago by Jong ▴ 10
1
vote
1
reply
219
views
Simulating mRNA-seq data using VG - theoretical question
mrna-seq vg sim
updated 12 weeks ago by ▴ 640 • written 3 months ago by ▴ 110
0
votes
1
reply
264
views
compare vg stat scores
vg
updated 3 months ago by ▴ 640 • written 3 months ago by • 0
3
votes
1
reply
461
views
Right method to annotate genes on pangenome graph
pangenome vg
updated 3 months ago by 6.8k • written 3 months ago by ▴ 20
6
votes
11
replies
763
views
sequenceTubeMap input files
sequencetubemap vg
updated 11 weeks ago by ▴ 640 • written 3 months ago by ▴ 10
0
votes
0
replies
172
views
vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
vg
3 months ago by tahermun • 0
3
votes
14
replies
1.3k
views
vg installation on MacOS failing: "ld: -headerpad: not a hexadecimal number: -headerpad_max_install_names"
macos vg
updated 3 months ago by 146k • written 3 months ago by ▴ 10
1
vote
2
replies
335
views
vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and associated MAPQ
vg
updated 3 months ago by ▴ 640 • written 3 months ago by • 0
0
votes
0
replies
196
views
Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated 4 months ago by 44k • written 4 months ago by ★ 3.9k
1
vote
6
replies
999
views
Is there a way to quickly calculate the nodes' average coverage of variation graph from the read alignment file (.gam, .json) ?
vg
4 months ago by Wenhai • 0
2
votes
4
replies
628
views
What path list should be used to surject GAM to GRCh38/CHM13 reference genome
vg
4 months ago by Hanc • 0
1
vote
3
replies
525
views
vg autoindex memory issues Signal 6 has occured
vg
3 months ago by l.dammer • 0
0
votes
1
reply
278
views
vg giraffe, accept admixed single and paired reads as input
vg
updated 4 months ago by ▴ 640 • written 4 months ago by • 0
0
votes
0
replies
191
views
vg search for all specific kmer/motif (e.g., RE site) occurrences in pangenome graph
vg
4 months ago by Thomas • 0
0
votes
2
replies
294
views
Making Changes to SequenceTubeMap
sequencetubemap vg
4 months ago by Mayank ▴ 10
1
vote
1
reply
267
views
vg view and vg surject both crashing after running giraffe
surject view extract giraffe vg
updated 4 months ago by 44k • written 5 months ago by • 0
1
vote
4
replies
539
views
VG autoindexing error: Chromosome path not found in graph or haplotypes
vg vgteam
4 months ago by l.dammer • 0
0
votes
1
reply
327
views
Vg Call error multiple paths detected using HPRC-GRCH38 ref
hprc call vg grch38
updated 4 months ago by ▴ 640 • written 5 months ago by • 0
3
votes
5
replies
785
views
Combining VG graphs
vg
updated 4 months ago by 4.5k • written 6 months ago by ▴ 110
1
vote
3
replies
1.2k
views
Comparing SV calls produced by VG call on a Minigraph-Cactus produced Pangenome Graph vs. a linear reference
minigraph-cactus variant-calling structural-variant vg
updated 5 months ago by • 0 • written 14 months ago by ▴ 30
0
votes
1
reply
399
views
vg call vs vg surject
vg variation graphs
updated 5 months ago by ▴ 520 • written 6 months ago by • 0
5
votes
9
replies
874
views
VG view and VG chunk failed when using SequenceTubeMap
vg vgteam
5 months ago by gforg34 ▴ 20
0
votes
0
replies
212
views
Tubemap multiseq
vg
5 months ago by karciharun42 • 0
0
votes
1
reply
291
views
Extracting haplotype-specific annotations from splicing graph
vg
updated 4 months ago by ▴ 640 • written 5 months ago by • 0
3
votes
2
replies
473
views
vg autoindex seems stuck after a week of running
vg pangenome
5 months ago by StevieP ▴ 10
1
vote
1
reply
348
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 5 months ago by ▴ 640 • written 5 months ago by ▴ 10
1
vote
1
reply
459
views
VG : No reference-sense paths available in the graph; falling back to generic paths.
vg
updated 6 months ago by ▴ 130 • written 6 months ago by ▴ 10
3
votes
2
replies
706
views
Using vg gamsort with naive sorting algorithm
gamsort vg
updated 6 months ago by 164k • written 14 months ago by ▴ 110
3
votes
3
replies
662
views
trouble using sequenceTubeMap in chromium installed on WSL
vg
6 months ago by ayushm64 • 0
3
votes
5
replies
810
views
Having trouble building VG in Ubuntu
vg
updated 6 months ago by 44k • written 6 months ago by • 0
50 results • Page 1 of 1
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