2
votes
5
replies
390
views
2
votes
1
reply
202
views
updated 12 days ago by
Pierre Lindenbaum
165k
•
written 12 days ago by
kmyers2
▴
90
1
vote
17
replies
819
views
5 days ago by
alejandro.mejiam1
▴
20
0
votes
0
replies
188
views
2
votes
7
replies
869
views
6 follow
2
votes
5
replies
558
views
updated 12 weeks ago by
Istvan Albert
102k
•
written 3 months ago by
bimeva5703
•
0
1
vote
1
reply
410
views
4
votes
2
replies
393
views
updated 4 months ago by
Pierre Lindenbaum
165k
•
written 4 months ago by
Uveyik
▴
70
4
votes
1
reply
335
views
updated 4 months ago by
Pierre Lindenbaum
165k
•
written 4 months ago by
Uveyik
▴
70
3
votes
2
replies
467
views
1
vote
1
reply
402
views
0
votes
1
reply
428
views
updated 7 months ago by
Ram
44k
•
written 7 months ago by
krzysm20009042
•
0
0
votes
3
replies
658
views
updated 9 months ago by
Pierre Lindenbaum
165k
•
written 9 months ago by
saifulislam99121
•
0
1
vote
3
replies
1.1k
views
0
votes
3
replies
671
views
updated 10 months ago by
Istvan Albert
102k
•
written 10 months ago by
Dylan
•
0
4
votes
2
replies
2.8k
views
updated 10 months ago by
Arslan Tariq
▴
130
•
written 22 months ago by
BioinfoBee
•
0
1
vote
1
reply
487
views
0
votes
1
reply
366
views
updated 11 months ago by
Pierre Lindenbaum
165k
•
written 11 months ago by
dlera.lozano
▴
10
2
votes
5
replies
1.2k
views
7
votes
5
replies
3.8k
views
written 6.6 years ago by
salamandra
▴
550
2
votes
1
reply
921
views
1
vote
7
replies
1.4k
views
1
vote
1
reply
928
views
updated 16 months ago by
aw7
▴
350
•
written 16 months ago by
Marcel Glueck
▴
10
1
vote
4
replies
1.9k
views
0
votes
1
reply
485
views
updated 16 months ago by
Pierre Lindenbaum
165k
•
written 16 months ago by
Sd
•
0
4
votes
6
replies
2.9k
views
6 follow
5
votes
12
replies
2.1k
views
updated 16 months ago by
John Marshall
3.1k
•
written 16 months ago by
Malcolm.Cook
★
1.5k
2
votes
3
replies
939
views
1
vote
1
reply
592
views
updated 16 months ago by
Pierre Lindenbaum
165k
•
written 16 months ago by
Athena
•
0
7
votes
4
replies
1.0k
views
5
votes
8
replies
5.4k
views
0
votes
1
reply
552
views
0
votes
2
replies
865
views
2
votes
5
replies
1.1k
views
2
votes
2
replies
811
views
4
votes
5
replies
1.1k
views
2
votes
2
replies
770
views
9
votes
5
replies
6.4k
views
1
vote
6
replies
3.7k
views
updated 21 months ago by
Hien
•
0
•
written 3.7 years ago by
khanhlpbao
•
0
0
votes
0
replies
1.0k
views
3
votes
3
replies
2.5k
views
updated 8 months ago by
colindaven
7.1k
•
written 21 months ago by
antoine.fauchois92
▴
20
1
vote
3
replies
1.1k
views
3
votes
6
replies
2.0k
views
3
votes
4
replies
1.2k
views
updated 22 months ago by
Ram
44k
•
written 22 months ago by
kaufman.eli.j
•
0
0
votes
2
replies
924
views
3
votes
3
replies
1.5k
views
1
vote
2
replies
1.7k
views
updated 23 months ago by
colindaven
7.1k
•
written 23 months ago by
Mark
▴
30
0
votes
6
replies
1.2k
views
0
votes
0
replies
518
views
Recent Votes
Recent Locations •
All
New Zealand, 1 minute ago
United Kingdom, 8 minutes ago
UCLA, 8 minutes ago
United States, 10 minutes ago
United Kingdom, 10 minutes ago
Memphis, TN, 11 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 12 minutes ago
Recent Awards •
All
Popular Question to
Luca
▴
20
Popular Question to
Drew
•
0
Scholar to
Jeremy Leipzig
23k
Centurion to
Biomonika (Noolean)
3.2k
Popular Question to
QX
▴
70
Popular Question to
pablo
▴
330
Teacher to
Arup Ghosh
3.3k
Recent Replies
Comment: Unusual File Count in 10x scMultiome Data for Cell Ranger ARC Processing
by
Wu-Sheng Zhang
•
0
Hi @genomax , thank you very much for your help! I go through that page but still a little confused. 10x scMultiomics data would store scAT…
Comment: multiBamSummary
by
JC
13k
check https://broadinstitute.github.io/picard/explain-flags.html to choose a proper flag
Answer: multiBamSummary
by
JC
13k
Yes, `--samFlagExclude 16` will exclude reads in the reverse strand, you need `--samFlagInclude 16` (primary hits, reverse strand) or some …
Answer: Mapping ~100-300bp Sequences to Metagenome-Assembled Genomes
by
Mensur Dlakic
★
29k
While I use Bowtie2, there is not a strong argument for it versus other genome aligners. I guess it is because I found a pipeline back in t…
Comment: How to convert CIGAR string to VCF?
by
cmdcolin
★
4.1k
i think this is a good exercise (I wrote a quick code that I have used for cigar parsing in javascript https://cmdcolin.github.io/posts/202…
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
by
Jeremy Leipzig
23k
seqr now fully supports Hail but apparently there are some issues that will force yet another switch https://github.com/broadinstitute/seqr…
Answer: How to convert CIGAR string to VCF?
by
Pierre Lindenbaum
165k
pseudo code:
refpos1 = <something-clipped-start>
readpos0= 0;
for(CigarElement ce: cigar) {
char co = ce.getOpera…
Comment: Split genotypes in VCF file
by
Biomonika (Noolean)
3.2k
vt decompose did the trick for me, followed by the filtering for 10th and 11th column. Thanks!
Comment: CLI Downloading from Human Microbiome Project Given Login + contact failure
by
Arup Ghosh
3.3k
Try the [HMP client][1] to download files from their [new portal][2].
[1]: https://github.com/IGS/portal_client
[2]: https://portal.h…
Comment: Extract FUngal mRNA from RNAseq Data
by
SomeOne
▴
170
i used the following command. Kindly let me know if i missed something or if it is now correct
```
bbsplit.sh ref=human_GRCh38.p14_genomic…
Comment: Gini Coefficient and Lorenz curve to measure uniformity of coverage
by
abascalfederico
★
1.2k
Thank you! I finally used some code from my supervisor for the Lorenz curves, it's relatively easy, and DescTools::Gini to compute the gini…
Comment: Why do people say it doesn't matter whether you run unassembled or assembled rea
by
dthorbur
★
2.8k
I'm not all that familiar with your field of research, but it would seem counterproductive to try and assemble reads of a microbial communi…
Comment: Extract FUngal mRNA from RNAseq Data
by
GenoMax
149k
It is worth trying. You will know reads that map to the fungal reference (even though fragmented) definitely belong there.
You could also…
Comment: Extract FUngal mRNA from RNAseq Data
by
SomeOne
▴
170
unfortunatly there is no chromosoem level reference genome available. But there are some genome assemblies available at scaffold or contig …
Traffic: 2811 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6