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Showing top results for tag: rRNA • reset
9
votes
10
replies
511
views
How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen rRNA DESeq2 RNAseq DGE
updated 10 days ago by 8.9k • written 17 days ago by ▴ 40
1
vote
2
replies
372
views
Illumina RNA-seq: Overrepresented sequences are mostly in the R2 reads, not R1
illumina rRNA RNAseq RNA
updated 20 days ago by 146k • written 20 days ago by ▴ 10
1
vote
5
replies
467
views
rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
RNA-seq gencode rRNA
updated 8 weeks ago by 44k • written 8 weeks ago by ★ 1.1k
0
votes
4
replies
342
views
Determining library prep: rRNA depletion or mRNA enrichment
rrna library mrna
updated 3 months ago by ★ 1.3k • written 3 months ago by • 0
0
votes
1
reply
384
views
RNA-seq, TMM and rRNA counts. Should rRNA genes be removed prior to DE analysis?
mtRNA RNA-seq rRNA TMM
updated 3 months ago by ★ 1.5k • written 3 months ago by • 0
1
vote
1
reply
258
views
DESeq2 sizeFactor for Bacterial RNASeq
normalization bacteria rRNA RNASeq
updated 3 months ago by 14k • written 3 months ago by • 0
3
votes
7
replies
768
views
Obtaining rRNA and tRNA contaminant file for RiboSeq
ribo-seq SILVA rRNA
4 months ago by Daniel ▴ 30
0
votes
7
replies
737
views
Ribosomal RNA Depletion in silico
minimap rna-seq rRNA nanopore
updated 4 months ago by 146k • written 4 months ago by • 0
0
votes
1
reply
356
views
Poor alignment post-SortMeRNA (rRNA removal)
STAR rRNA RNAseq SortMeRNA
updated 4 months ago by 3.8k • written 4 months ago by ▴ 20
0
votes
3
replies
447
views
RNAseq RNA content
mRNA Linux rRNA RNA-seq RNA
updated 5 months ago by ▴ 590 • written 5 months ago by ▴ 10
0
votes
1
reply
279
views
Mouse ribosome sequences in fasta format
fasta mm10 rRNA
updated 5 months ago by 146k • written 5 months ago by ▴ 110
7
votes
3
replies
3.8k
views
Tutorial: Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation rRNA RNAmmer Genome
updated 6 months ago by 6.8k • written 22 months ago by ▴ 130
0
votes
3
replies
498
views
rRNA depletion of RIP-seq samples
rRNA RIP-seq
updated 6 months ago by ▴ 590 • written 6 months ago by • 0
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna rRNA metagenomics
updated 7 months ago by 44k • written 14.0 years ago by ▴ 650
0
votes
0
replies
307
views
% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
10 months ago by jkim ▴ 180
4
votes
6
replies
880
views
Unexpected separation of RNA-seq samples on PCA plot
depletion PCA rRNA plot RNA-seq
11 months ago by Tihana ▴ 10
0
votes
0
replies
300
views
KEGG ribosomal gene found in metatranscriptome despite removing rRNA sequences
rRNA KEGG metatranscriptomics
12 months ago by kmat • 0
1
vote
4
replies
746
views
rRNA filtering from human RNA-seq data
rRNA RNA-seq
13 months ago by deniz ▴ 10
0
votes
2
replies
814
views
should remove unassigned genera in 16S rRNA sequencing analysis
16S rRNA metagenomics sequencing
15 months ago by zhangdengwei ▴ 210
1
vote
0
replies
447
views
Alternative approach to rarefying in 16S rRNA analysis
16S Rarefying rRNA
17 months ago by zhangdengwei ▴ 210
0
votes
2
replies
982
views
too many zeros in 16S rRNA amplicon sequencing data
16S rRNA
17 months ago by zhangdengwei ▴ 210
5
votes
4
replies
1.4k
views
rRNA contaminants RNASeq
rRNA Removal RNASeq Transcriptomics
18 months ago by plain_text • 0
5
votes
3
replies
945
views
How do i search a FASTA database by sequence in seqkit?
seqkit rRNA genomics 16s gene
updated 18 months ago by 146k • written 18 months ago by ▴ 10
2
votes
4
replies
1.2k
views
Remove rRNA for RNA-Seq Analysis
rRNA RNA-Seq EdgeR
updated 24 months ago by 146k • written 24 months ago by ▴ 50
5
votes
1
reply
1.7k
views
To create a pre-trained classifier provided by QIIME2 using RESCRIPt
RESCRIPt rRNA 16S Qiime2 SILVA
updated 2.2 years ago by 3.8k • written 2.2 years ago by ▴ 20
1
vote
1
reply
726
views
qiime2 issues about taxonomy file
Qiime2 SILVA rRNA 16S
updated 2.2 years ago by 3.8k • written 2.2 years ago by ▴ 20
0
votes
0
replies
531
views
How can I remove tRNA, rRNA, snoRNA from the NGS miRNA sample using RFAM
rRNA tRNA RFAM mirna
2.3 years ago by khq5801 ▴ 10
1
vote
1
reply
561
views
Bioinformatic analysis of small RNA sequencing data
Non-coding tRNA microRNA SmallRNA rRNA
updated 2.3 years ago by 4.9k • written 2.3 years ago by • 0
0
votes
6
replies
1.2k
views
Ribosomal Depletion
rRNA STAR sequencing contamination RNA
updated 2.4 years ago by 3.8k • written 2.4 years ago by • 0
4
votes
6
replies
1.6k
views
Low mapping rate due to rRNA
RNA-seq rRNA STAR
updated 2.4 years ago by ★ 1.8k • written 2.4 years ago by ▴ 50
0
votes
6
replies
1.2k
views
Possible rRNA contamination in one sample
hisat2 featureCounts STAR rRNA RNA-Seq
2.4 years ago by bioinfo355 • 0
0
votes
0
replies
345
views
Standard for aligning smallRNA to a reference human rRNA?
rRNA RNAseq miRNA
2.4 years ago by Mauro ▴ 20
16
votes
7
replies
6.8k
views
6 follow
rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rRNA intron RNA-Seq bbsuite sormeRNA
updated 20 months ago by 146k • written 4.9 years ago by ▴ 640
3
votes
7
replies
3.1k
views
downloading human rRNA.fasta
rRNA
updated 10 months ago by • 0 • written 2.5 years ago by ▴ 260
5
votes
4
replies
1.4k
views
Tools for rRNA gene annotations
software annotation rRNA
updated 2.4 years ago by ▴ 110 • written 2.5 years ago by ▴ 40
1
vote
1
reply
1.1k
views
BASH SortMeRNA--Fasta Must be followed by an index name
index bash rRNA
updated 2.6 years ago by 21k • written 2.6 years ago by • 0
0
votes
1
reply
772
views
rRNA Contamination in the RNA-seq library
Transcriptme NGS CirRNA rRNA
updated 2.7 years ago by ★ 1.8k • written 2.7 years ago by • 0
0
votes
0
replies
349
views
all type strain 16S rRNA sequences of Alcaligenaceae
family 16S type_strain rRNA
2.7 years ago by Konstantina • 0
1
vote
1
reply
568
views
Paired-end sequnces of 16S rRNA are not merged.
Flash paired-end rRNA sequnces 16S
updated 2.9 years ago by 6.8k • written 2.9 years ago by • 0
0
votes
0
replies
530
views
Using reverse-complement or just complement of SILVA database to filter rRNA from metatranscriptomics
filtering just reverse-complement complement metatranscriptomics rRNA
2.9 years ago by Mort • 0
4
votes
7
replies
1.6k
views
get rRNA FASTA file for a particular bacteria
rRNA RNAseq
2.9 years ago by basuanubhav ▴ 140
0
votes
1
reply
708
views
SeqMonk rRNA from QCplot 100%
rRNA RNAseq SeqMonk
2.9 years ago by ED • 0
1
vote
1
reply
885
views
Select local alignment or end-to-end alignment for Bowtie2 to filter rRNA
metatranscriptomics filtering rRNA Bowtie2
updated 2.9 years ago by 146k • written 2.9 years ago by • 0
0
votes
1
reply
659
views
Online short courses to learn metagenomics
16s Metagenomics Rrna
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
7
votes
9
replies
3.2k
views
6 follow
Is it possible to predict functional profile of microbiome through 16S rRNA gene amplicon-based sequences?
16S rRNA microbiome
updated 12 months ago by ★ 1.6k • written 3.0 years ago by ▴ 20
0
votes
0
replies
424
views
How to get all SSU rRNA genes in isolated genome from IMG/M
rRNA IMG SSU
3.0 years ago by Golf • 0
1
vote
2
replies
898
views
High counts of rRNA in RNA-Seq
rrna rnaseq
updated 3.1 years ago by 85k • written 3.1 years ago by • 0
0
votes
0
replies
690
views
Sortmerna error
rrna rnaseq sortmerna
3.2 years ago by Stella • 0
0
votes
1
reply
651
views
RNAseq quality control-rRNA rate
rRNA rate RNAseq
updated 3.2 years ago by 44k • written 3.2 years ago by ▴ 10
1
vote
2
replies
919
views
Collect ITS sequences from bacterial genomes
rRNA ITS internal 16S transcribed taxonomy region
updated 3.3 years ago by ★ 28k • written 3.3 years ago by ▴ 50
50 results • Page 1 of 1
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
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What p-value do you mean? When and how did you calculate it?
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What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
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