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Showing top results for tag:
rMATs
•
reset
1
vote
1
reply
690
views
rMATS-turbo build_rmats --conda issue: Run 'conda init' before 'conda activate'
conda
rmats-turbo
rmats
updated 10 weeks ago by
GenoMax
145k • written 10 weeks ago by
Angelos
▴ 10
0
votes
0
replies
246
views
MaxEntScan for rMATS results
MaxEntScan
rMATS
4 months ago by
adi.gershon1
• 0
1
vote
0
replies
177
views
Producing sequence for splicing isoforms
isoform
rMATs
splicing
alternative
SplAdder
4 months ago by
tomas4482
▴ 430
0
votes
1
reply
407
views
input file in rmats
rmats
updated 4 months ago by
Mathew
▴ 160 • written 4 months ago by
Lambodarswain316
• 0
0
votes
1
reply
280
views
input file for alternative splicing in rmats in linux
rmats
updated 4 months ago by
Ram
44k • written 4 months ago by
Lambodarswain316
• 0
1
vote
3
replies
864
views
failing to install rMATS
rMATS
updated 6 months ago by
truong128
• 0 • written 7 months ago by
thomas.heigl.ibk
• 0
0
votes
0
replies
239
views
rMATS reports zero evenets?
splicing
RNA-Seq
rmats
6 months ago by
PK
▴ 130
0
votes
0
replies
339
views
cannot plot with rmats2sashimiplot
rmats2sashimiplot
rMATS
7 months ago by
thomas.heigl.ibk
• 0
0
votes
2
replies
600
views
Issue with Opening BAM Files in rMATS on WSL Environment
WSL
RNA-seq
rmats
updated 9 months ago by
Ram
44k • written 9 months ago by
Cameron.walker9900
• 0
0
votes
0
replies
336
views
rMATS analysis of RNA-seq
rMATS
updated 9 months ago by
Ram
44k • written 9 months ago by
adi.gershon1
• 0
1
vote
1
reply
1.1k
views
A suited tool to guide the visualization of rMATs output?
rMATs
visualization
updated 11 months ago by
Y
• 0 • written 3.2 years ago by
Hojn
▴ 20
0
votes
1
reply
548
views
rMats Run Does Not Generate More Than One Output Row Per File
Singularity
rMats
updated 12 months ago by
Ram
44k • written 12 months ago by
Y
• 0
1
vote
0
replies
512
views
rMATS visualisation
R
rMATS
maser
updated 12 months ago by
Ram
44k • written 12 months ago by
Smriti
▴ 30
0
votes
0
replies
491
views
My rMATS output file is not showing gene symbols and only XLOC gene ID are being shown.
rMATS
rMATS-turbo
12 months ago by
Nipan
• 0
0
votes
0
replies
572
views
How the "IJC" is calculated in rMATS tool?
Sashimi
sequencing
alignment
rMATS
rna-seq
16 months ago by
Apex92
▴ 300
0
votes
1
reply
484
views
Is it possible to use pseudoalignments.bam to run rMATs?
Kallisto
rMATs
updated 18 months ago by
dsull
★ 6.8k • written 18 months ago by
Lillian
• 0
0
votes
0
replies
345
views
How to know the reads supporting each events in rMats
splicing
rMats
22 months ago by
xidianbill
▴ 10
0
votes
1
reply
675
views
How to get/make a .gf file? rmats2sashimi
rMATS
.gf
rmats2sashimiplot
updated 24 months ago by
benformatics
4.0k • written 24 months ago by
Megan Noonan
▴ 10
2
votes
5
replies
1.8k
views
rMATS reads used is zero (0)
splicing
python
rMATS
alternative
updated 2.0 years ago by
benformatics
4.0k • written 2.0 years ago by
Megan Noonan
▴ 10
0
votes
0
replies
404
views
How robust is rMATS when swapping samples?
splicing
rmats
RNA-seq
STAR
alternative
2.2 years ago by
Apex92
▴ 300
0
votes
0
replies
472
views
Question about rMATS output files
rMATS
novel
2.3 years ago by
Lillian
• 0
0
votes
0
replies
415
views
rmats processing temporary outputs
rmats
rnaseq
2.4 years ago by
Adrian
• 0
0
votes
0
replies
954
views
how to visualize correctly significant splicing events- inconsistencies between rMATS results and IGV sashimi plots
splicing
rMATS
RNA-seq
sashimi-plot
STAR
2.4 years ago by
Reuth
• 0
0
votes
2
replies
831
views
rMATS can't open bam created by hisat2
hisat2
rMATS
bam
2.5 years ago by
ianlee96
▴ 10
0
votes
2
replies
994
views
Making GTF File
rMATS
StringTie
splicing
STAR
2.5 years ago by
Elizabeth Alice
• 0
0
votes
1
reply
776
views
error in rmats when mapping
rmats
2.7 years ago by
katie326
• 0
1
vote
1
reply
952
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 2.7 years ago by
jv
★ 1.8k • written 2.7 years ago by
Sara
▴ 260
2
votes
2
replies
1.4k
views
Getting errors trying to run rmats
analysis
splicing
rMATs
updated 2.8 years ago by
i.sudbery
20k • written 2.8 years ago by
Omnia
• 0
0
votes
2
replies
956
views
Read coverage for specific coordinates
Splicing
PSI
RNA-Seq
read_coverage
rmATS
2.9 years ago by
Onkar
• 0
2
votes
1
reply
1.0k
views
alternative splicing: very different outputs from rMATS vs altanalyze
alternative
rMATS
splicing
altanalyze
updated 3.0 years ago by
i.sudbery
20k • written 3.0 years ago by
smurph50
▴ 50
0
votes
0
replies
483
views
rmaps fiel output
RBPs
splicing
rMATs
rmaps
3.2 years ago by
Larry
• 0
2
votes
6
replies
1.6k
views
rMATS BAM file MemoryError Issue
rMATS
processing
BAM
3.2 years ago by
saipra003
▴ 10
7
votes
11
replies
5.4k
views
Issue installing rmats using conda
RNA-Seq
rmats
splicing
conda
updated 4.0 years ago by
benformatics
4.0k • written 4.0 years ago by
noahhelton98
• 0
0
votes
2
replies
1.0k
views
Determine Reading Frame from Exon Genomic Positions (rMATS)
RNA-Seq
rmats
genome
updated 4.0 years ago by
swbarnes2
14k • written 4.0 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.6k
1
vote
0
replies
953
views
Event- vs transcript-based approaches for analyzing alternative splicing
RNA-Seq
alternative splicing
rMATS
Salmon
4.2 years ago by
fmerkal
▴ 60
1
vote
1
reply
1.4k
views
rMATS keeps running but no outputs nor any errors reported
rMATS
alternative splicing analysis
4.4 years ago by
Yingzi Zhang
▴ 90
0
votes
2
replies
1.1k
views
Logit-normal distribution to model variation among biological replicates
rMATS
alternative splicing
distribution
updated 4.5 years ago by
Kevin Blighe
88k • written 4.5 years ago by
CY
▴ 750
0
votes
0
replies
891
views
Detection of splicing defects in RNA-Seq data of Arabidopsis thaliana
RNA-Seq
Splicing
plants
rmats
updated 4.5 years ago by
ATpoint
84k • written 4.5 years ago by
julius
• 0
0
votes
0
replies
1.1k
views
Input files for rMATs
RNA-Seq
rMATS
STAR
updated 4.7 years ago by
GenoMax
145k • written 4.7 years ago by
hchau2k19
• 0
5
votes
15
replies
9.6k
views
input for rMATS
rMATS
STAR
RNA-Seq
updated 4.8 years ago by
Ömer An
▴ 260 • written 6.7 years ago by
bisht20diksha
▴ 30
0
votes
1
reply
1.4k
views
Alternate Splicing Analysis using rMATS for paired samples
rMATS
Alternate Splicing
Paired Samples
5.0 years ago by
ilovesuperheroes1993
▴ 40
0
votes
1
reply
1.8k
views
Analysis rMATS of RNA Seq data
rmats
RNA-Seq
5.7 years ago by
ahmadabuaysheh
• 0
1
vote
13
replies
4.6k
views
install libatlas3 without sudo / root access
rMATS
libatlas3
install
conda
RNA-Seq
updated 5.7 years ago by
Biostar
20 • written 5.9 years ago by
paulranum11
▴ 80
8
votes
5
replies
5.1k
views
Getting error in running rMATS
RNA-Seq
software error
rMATS
alternative splicing
6.1 years ago by
Reza
▴ 10
2
votes
5
replies
3.6k
views
Error running the rMATS for splicings
rMATS
NGS
RNA-Seq
updated 6.2 years ago by
Biostar
20 • written 6.2 years ago by
Omics data mining
▴ 260
0
votes
2
replies
2.4k
views
Problem in installing rMATS through conda?
rMATS
Conda
updated 6.7 years ago by
vimalkvn
▴ 320 • written 6.7 years ago by
majeedaasim
▴ 60
2
votes
2
replies
2.0k
views
how to identify which tissue has more alternative splicing?
rmats
alternative splicing
cuffdiff
updated 7.0 years ago by
petebio
▴ 100 • written 7.0 years ago by
mail2steff
▴ 70
0
votes
0
replies
2.1k
views
rMATS calculate intron retention
RNA-Seq
software
rmats
splicing
intron retention
7.4 years ago by
yuxinghai
▴ 10
1
vote
0
replies
2.5k
views
rMATS readlength difference
rMATS
RNA-Seq
Splicing
7.6 years ago by
firatuyulur
▴ 320
2
votes
15
replies
5.0k
views
Alternate splicing-rMATS error
RNA-Seq
AlternativeSplicing
rMATS
updated 3.2 years ago by
vidriera
• 0 • written 8.1 years ago by
arunbodd
▴ 10
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