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Showing top results for tag:
qiime2
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0
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174
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News:
Course: Metabarcoding in Microbial Ecology
R
Qiime2
Metabarcoding
Microbial-Ecology
20 days ago by
carlopecoraro2
★ 2.6k
0
votes
1
reply
353
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 4 months ago by
Ram
44k • written 5 months ago by
Valentina
• 0
0
votes
0
replies
246
views
Relative abundance output from qiime2
relative-abundance
classification
qiime2
taxon
updated 6 months ago by
Ram
44k • written 6 months ago by
arunsaikirans
• 0
0
votes
1
reply
522
views
qiime2 paired end fastqs import
qiime2
metagenomics
updated 10 months ago by
GenoMax
145k • written 10 months ago by
10mz1
▴ 10
0
votes
0
replies
338
views
Dereplication of nanopore sequences using q2ONT workflow
qiime2
dereplication
11 months ago by
muhammad.akram
▴ 10
0
votes
0
replies
427
views
News:
Course -Metabarcoding in Microbial Ecology
R
Qiime2
Microbial-Ecology
Metabarcoding
updated 11 months ago by
Ram
44k • written 11 months ago by
carlopecoraro2
★ 2.6k
3
votes
3
replies
991
views
When counting ASVs in DADA2, does a hit/count only occur at 100% alignment percent identity?
metagenomics
qiime2
amplicon
16s
dada2
updated 13 months ago by
andres.firrincieli
3.7k • written 13 months ago by
O.rka
▴ 740
0
votes
3
replies
2.0k
views
Dada2 in Qiime2: losing reads during merging
Qiime2
Chimer
Dada2
updated 16 months ago by
andres.firrincieli
3.7k • written 16 months ago by
kamanovae
▴ 100
0
votes
1
reply
1.1k
views
Tool:
web app for user-friendly analysis of 16S rRNA gene meta-barcoding NGS data - bacterial microbiome
qiime2
16s
microbiome
ngs
updated 16 months ago by
Ram
44k • written 17 months ago by
camillatafuro
• 0
0
votes
0
replies
535
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
20 months ago by
carlopecoraro2
★ 2.6k
1
vote
3
replies
1.8k
views
How can I change my default python version (from upper to lower) in Ubuntu OS using virtual machine ?
Qiime2
Linux
Machine
Virtual
Python
updated 21 months ago by
GenoMax
145k • written 23 months ago by
ohtang7
▴ 40
0
votes
0
replies
495
views
News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
23 months ago by
carlopecoraro2
★ 2.6k
0
votes
1
reply
1.2k
views
DADA2 or Deblur
QIIME2
updated 23 months ago by
Arup Ghosh
3.2k • written 23 months ago by
amaddheshiya1610
• 0
0
votes
0
replies
307
views
Help with metadata in qiime2
Qiime2
metabarcoding
2.0 years ago by
crazy_martyn
• 0
0
votes
0
replies
439
views
Problem importing otu.fasta file into qiime
otu
featuredatasequence
qiime2
2.0 years ago by
noobiestar
▴ 30
1
vote
4
replies
3.3k
views
DNA barcode sequences for Qiime2 and meaning of it
Qiime2
genome
sequence
Barcode
updated 24 months ago by
Ram
44k • written 6.2 years ago by
pple2202
• 0
5
votes
1
reply
1.6k
views
To create a pre-trained classifier provided by QIIME2 using RESCRIPt
RESCRIPt
rRNA
16S
Qiime2
SILVA
updated 2.1 years ago by
andres.firrincieli
3.7k • written 2.1 years ago by
yeshirata
▴ 20
1
vote
1
reply
710
views
qiime2 issues about taxonomy file
Qiime2
SILVA
rRNA
16S
updated 2.1 years ago by
andres.firrincieli
3.7k • written 2.1 years ago by
yeshirata
▴ 20
0
votes
3
replies
2.0k
views
Are there any tools that automatically detect where to truncate forward and reverse reads for 16S (DADA2)?
16s
dada2
illumina
metagenomics
qiime2
2.1 years ago by
O.rka
▴ 740
0
votes
2
replies
1.2k
views
setting overlap in DADA2 in qiime2
dada2
qiime
qiime2
2.2 years ago by
blur
▴ 280
0
votes
1
reply
1.0k
views
Snakemake Qiime2 caching error
Qiime2
Snakemake
updated 2.2 years ago by
Jesse
▴ 850 • written 2.2 years ago by
David
• 0
0
votes
11
replies
2.9k
views
Error in Importing data in qiime2
Metagenomics
Sequencing
Qiime2
Amplicon
2.2 years ago by
Vaishnavi
• 0
0
votes
0
replies
369
views
Filtering metagenome amplicon sequencing data
data
metagenome
QIIME2
2.3 years ago by
kocharovskayaj
• 0
0
votes
2
replies
1.5k
views
LEfSe - Issue when plotting using the python script plot_res.py (Traceback (most recent call last)
metadata
differentially
taxa
lefse
abundant
qiime2
numerical-categorical
updated 2.3 years ago by
andres.firrincieli
3.7k • written 3.2 years ago by
Mania
• 0
0
votes
0
replies
465
views
How to normalize biom table from qiime2 to edgeR on Rstudio?
normalization
Rstudio
biomtable
qiime2
edgeR
2.4 years ago by
kevin
• 0
2
votes
2
replies
1.6k
views
losing large amount of reads when using Qiime2 vsearch joinpairs command
16S
Qiime2
amplicon
joining
2.4 years ago by
jobie1
▴ 30
0
votes
0
replies
508
views
News:
Online course - Metabarcoding in microbial Ecology
Qiime2
Metabarcoding
Microbial-Ecology
updated 21 months ago by
Ram
44k • written 2.4 years ago by
carlopecoraro2
★ 2.6k
0
votes
0
replies
526
views
why/how is unweighted unifrac a better approach to finding a biomarker than weighted unifrac?
diversity
microbiome
amplicon
Unifrac
Qiime2
2.4 years ago by
jobie1
▴ 30
0
votes
1
reply
1.3k
views
Qiime2 Exclude Seqs with FASTQ as query data.
blastn
fastq
qiime2
updated 2.5 years ago by
zorbax
▴ 650 • written 2.5 years ago by
adria.mitjavila94
• 0
0
votes
4
replies
1.7k
views
QIIME2 Vs MetaPhlAn3
metaphlan
qiime2
2.5 years ago by
Abhishek
• 0
0
votes
0
replies
322
views
Finding an acceptable min/max read count in two groups samples
v4v5
amplicon
16s
readcount
Qiime2
2.5 years ago by
jobie1
▴ 30
0
votes
0
replies
401
views
Importing data in Qiime2 (q2cli)
qiime2
q2cli
analysis
Metagenomic
2.7 years ago by
shivankparashar
• 0
1
vote
0
replies
984
views
QIIME2 quality control
control
dada2
quality
qiime2
3.2 years ago by
blur
▴ 280
0
votes
0
replies
945
views
Quality score and trimming length in DADA2
QIIME2
DADA2
3.3 years ago by
yohannessys
• 0
1
vote
6
replies
2.0k
views
pheatmap input file
r
Qiime2
pheatmap
3.4 years ago by
Bioinfonext
▴ 470
0
votes
3
replies
2.2k
views
Can you generate ASVs from pre-merged paired-end reads?
ASV
OTU
dada2
qiime2
16S
updated 3.6 years ago by
AfinaM
▴ 30 • written 3.6 years ago by
sambjohnson94
• 0
0
votes
1
reply
951
views
Generating Taxonomy and Sequence References for Microbial Functional Genes Using Qiime2.
next-gen
Qiime2
Microbial Functional Genes
3.9 years ago by
jazebe_1461
• 0
0
votes
1
reply
3.7k
views
questions about qiime2 manifest file; error message: semantic type SampleData[SequenceWithQuality] does not have a compatible directory format.
qiime2
manifest file
qiime
metagenome
fastq
updated 3.9 years ago by
antonioggsousa
3.2k • written 3.9 years ago by
seok1213neo
▴ 40
0
votes
2
replies
1.3k
views
Error while running Jupyter script on HPC
Biopython
Jupyter
qiime2
4.0 years ago by
Bioinfonext
▴ 470
0
votes
4
replies
1.4k
views
R: How to separate column into multiple ones? How to export created table from R to Excel
R
parse_taxonomy
qiime2
split_row_to_columns
4.2 years ago by
monkeystrohhutdruffy
• 0
1
vote
0
replies
1.7k
views
Creating manifest file:Qiime2
genome
next-gen
sequencing
Qiime2
updated 4.6 years ago by
zx8754
12k • written 4.6 years ago by
avinashbelure3
▴ 10
0
votes
0
replies
1.3k
views
QIIME2 Clustering and DeNoising
software-error
qiime2
qiime
updated 15 months ago by
Ram
44k • written 4.8 years ago by
rahul.yadav
▴ 10
0
votes
0
replies
886
views
Barcode and Linker for QIIME2 analysis
SRA
QIIME2
metadata
Barcode
metagenome
4.7 years ago by
karthikqk95
• 0
1
vote
2
replies
4.7k
views
QIIME 2 Denoising using DADA2
QIIME2
4.8 years ago by
rahul.yadav
▴ 10
2
votes
6
replies
2.6k
views
Qiime2 Demux Error
qiime2
demux
updated 4.8 years ago by
GenoMax
145k • written 4.8 years ago by
zach
▴ 10
4
votes
9
replies
2.9k
views
How to distinguish between 16S chloroplast reads and real bacteria ones?
metagenomics
primers
qiime2
sequencing
16s
updated 4.9 years ago by
andres.firrincieli
3.7k • written 4.9 years ago by
Raito92
▴ 100
0
votes
1
reply
1.3k
views
News:
Course 16S Metabarcoding in Berlin (March 2020)
R
Qiime2
Metabarcoding
updated 16 months ago by
Ram
44k • written 5.0 years ago by
carlopecoraro2
★ 2.6k
0
votes
2
replies
1.2k
views
Qiime2 - make table.gza
qiime2
5.1 years ago by
agata88
▴ 870
2
votes
1
reply
2.5k
views
Will many zero values of relative frequency cause LEFSe error?
qiime2
LEFSe
updated 5.1 years ago by
Biostar
20 • written 5.3 years ago by
MatthewP
★ 1.4k
0
votes
1
reply
1.9k
views
Importing pyrosequencing data into QIIME2
qiime2
updated 5.4 years ago by
GenoMax
145k • written 5.4 years ago by
ropolocan
▴ 830
50 results • Page
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