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50 results • Page
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Showing top results for tag:
qc
•
reset
0
votes
0
replies
163
views
Forward strand alignment
QC
GWAS
strand
alignment
10 days ago by
JJ
• 0
0
votes
1
reply
247
views
rRNA contamination after filtering
QC
contamination
ribosomal-RNA
updated 23 days ago by
GenoMax
146k • written 23 days ago by
sleepystudent
• 0
1
vote
1
reply
429
views
How to deal with warnings from PLINK while performing QC using HAPMAP data ?
QC
Hapmap
PLINK
GWAS
updated 9 weeks ago by
Kevin Blighe
88k • written 11 weeks ago by
Yugan Gogul Muthukumar
▴ 10
2
votes
1
reply
297
views
Quality check in long read (ONT, PacBio) bam files
QC
bam
minimap2
updated 10 weeks ago by
GenoMax
146k • written 10 weeks ago by
shinyjj
▴ 50
1
vote
1
reply
306
views
Can i use population as a trait to perform GWAS?
Hapmap
PLINK
GWAS
QC
updated 10 weeks ago by
dthorbur
★ 2.5k • written 11 weeks ago by
Yugan Gogul Muthukumar
▴ 10
1
vote
2
replies
351
views
How to fix this error while performing QC in PLINK "Warning: 228 het. haploid genotypes present"
Hapmap
PLINK
GWAS
QC
11 weeks ago by
Yugan Gogul Muthukumar
▴ 10
1
vote
1
reply
215
views
QC for UKB GWAS data
UKB
GWAS
QC
updated 11 weeks ago by
bk11
★ 3.0k • written 11 weeks ago by
Mahnaz
• 0
1
vote
1
reply
226
views
What's the difference between different quality control softwares?
QC
Trimomatic
Trim_galore
updated 3 months ago by
GenoMax
146k • written 3 months ago by
Pallondyle
• 0
2
votes
5
replies
473
views
Nanopore Data Quality Check
QC
Fungi
genome-assembly
Nanopore
3 months ago by
Umer
▴ 120
0
votes
3
replies
345
views
Issues with longQC
QC
long-read
updated 4 months ago by
GenoMax
146k • written 4 months ago by
SethJ
• 0
3
votes
4
replies
569
views
QC Analysis from Sanger sequencing
qc
ab1
sanger
4 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
783
views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scRNA-seq
QC
single
cell
BDRhapsody
analysis
updated 5 months ago by
valdirbarth
▴ 20 • written 18 months ago by
Salomé
• 0
1
vote
7
replies
940
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
6 months ago by
eebloom
▴ 90
2
votes
4
replies
722
views
Should I use unpaired reads from trimmomatic
RNA-seq
QC
Trimmomatic
updated 6 months ago by
swbarnes2
14k • written 6 months ago by
dxj294
• 0
0
votes
2
replies
601
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
6 months ago by
_quantum_girl_
▴ 60
0
votes
1
reply
437
views
gene body coverage with RSeqQC
rna-seq
qc
updated 6 months ago by
BioinfGuru
★ 2.1k • written 6 months ago by
wiscoyogi
▴ 40
1
vote
6
replies
690
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 6 months ago by
GenoMax
146k • written 6 months ago by
eebloom
▴ 90
1
vote
2
replies
461
views
read length in structural variant calling
nanopore
SV
QC
ONT
variant
6 months ago by
eebloom
▴ 90
0
votes
0
replies
204
views
In scRNA, How should I set QC standards?
scRNA
QC
7 months ago by
mnx0723
• 0
3
votes
3
replies
526
views
quality control scRNAseq
scRNAseq
qc
updated 7 months ago by
jv
★ 1.8k • written 7 months ago by
sarahmanderni
▴ 120
0
votes
1
reply
381
views
Resolution of ambiguous calls in germline vcf
vcfs
germline
qc
updated 8 months ago by
Jeremy Leipzig
22k • written 8 months ago by
Raygozak
★ 1.4k
0
votes
3
replies
716
views
Increasing per base G content in QC sequencing files
FastQC
GC-content
QC
NovaSeq
updated 8 months ago by
GenoMax
146k • written 8 months ago by
robertsr
• 0
0
votes
2
replies
659
views
How to choose --hwe threshold?
plink
hardy-weinberg
quality-control
qc
8 months ago by
_quantum_girl_
▴ 60
3
votes
4
replies
568
views
What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
QC
8 months ago by
William
★ 5.3k
0
votes
0
replies
288
views
Seeking blacklist (exclusion list) for S. cerevisiae in ChIP-seq analysis
QC
blacklist
ChIP-seq
9 months ago by
kalavattam
▴ 270
1
vote
3
replies
533
views
What do you usually use for QC using DNBseq?
DNBseq
fastqc
qc
Illumina
RNA-seq
updated 9 months ago by
GenoMax
146k • written 9 months ago by
ev97
▴ 40
2
votes
3
replies
911
views
Filtering long read data
dorado
alignment
filtering
QC
nanopore
10 months ago by
eebloom
▴ 90
0
votes
1
reply
460
views
Trimming reads before running Juicer
HiC
JUICER
QC
updated 10 months ago by
bk11
★ 3.0k • written 10 months ago by
isMM
• 0
1
vote
2
replies
663
views
Quality control on imputed genotypes for GWAS / application of PGS
qc
imputation
plink
regenie
gwas
11 months ago by
loy_loy
▴ 10
1
vote
4
replies
1.4k
views
scRNA-seq quality control
qc
scrnaseq
updated 11 months ago by
jv
★ 1.8k • written 11 months ago by
sarahmanderni
▴ 120
1
vote
4
replies
1.7k
views
Filtering qscore on dorado
dorado
filtering
QC
nanopore
Guppy
6 months ago by
eebloom
▴ 90
0
votes
0
replies
325
views
Tool:
massSight: A tool to combine LC-MS datasets
qc
metabolomics
omics
R
lc-ms
12 months ago by
Chiraag
• 0
1
vote
1
reply
904
views
How to split a folder full of pod5 by phred score?
phred
qc
ont
nanopore
pod5
updated 12 months ago by
GenoMax
146k • written 12 months ago by
compuTE
▴ 140
0
votes
0
replies
435
views
Different “Reads Mapped Confidently to Transcriptome” values in scRNA
QC
rnaseq
single-cell
12 months ago by
chisqga
• 0
5
votes
8
replies
2.2k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq
DNA-Seq
contamination
QC
updated 12 months ago by
Jingjingzhang
• 0 • written 4.2 years ago by
from the mountains
▴ 250
0
votes
4
replies
826
views
Should I normalise RNA-seq data with this QC profile?
seqmonk
rna-seq
qc
normalisation
updated 12 months ago by
1769mkc
★ 1.2k • written 12 months ago by
a_bis
▴ 40
0
votes
2
replies
757
views
Picking parameters for QC of long-read data?
long-read
nanopore
qc
qualiy-control
14 months ago by
Gio
• 0
0
votes
2
replies
638
views
How to find bias in library
evenness
bias
diversity
QC
14 months ago by
Nhan
• 0
1
vote
2
replies
1.3k
views
QC Illumina EPIC array: Removing SNPs at CpG sites
SNPs
methylation
QC
Illumina
EPIC
updated 15 months ago by
Zhenyu Zhang
★ 1.2k • written 15 months ago by
kaaz
• 0
3
votes
6
replies
1.0k
views
plink QC
QC
Plink
15 months ago by
karthick
▴ 10
3
votes
4
replies
791
views
Whole transcriptome analysis nominated primarily miRNA-related pathways. Advice?
miRNA
RNA-seq
QC
GSEA
15 months ago by
LauferVA
4.5k
0
votes
0
replies
476
views
Does Minknow in nanopore sequencing trim low qscore bases?
filtering
nanopore
qc
minknow
ont
16 months ago by
grkorompis
• 0
0
votes
0
replies
566
views
ambient RNA quality control in scRNA-seq
cellranger
scRNA-seq
QC
seurat
snRNA-seq
16 months ago by
joonhong kwon
▴ 70
0
votes
2
replies
854
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat
QC
Single-Cell
17 months ago by
bk11
★ 3.0k
0
votes
2
replies
1.3k
views
Hardy-Weinberg Equilibrium and MAF filtering post imputation
QC
beagle
imputation
updated 17 months ago by
LauferVA
4.5k • written 3.0 years ago by
andreas131298
• 0
1
vote
2
replies
624
views
Low % reads mapped and high % genome coverage
samtools
coverage
QC
sequencing
updated 16 months ago by
Ram
44k • written 18 months ago by
natural_decline
• 0
0
votes
2
replies
771
views
what is the reason of fastqc software different in QC% in fastq1 fastq2
QC
fastqc
18 months ago by
wdpang
• 0
0
votes
1
reply
1.0k
views
Apply hard-call-threshold to pgen files using PLINK2
pgen
QC
hard-call-filter
UKbiobank
18 months ago by
xuan.zhou2017
• 0
0
votes
2
replies
1.1k
views
Why is Beagle v5.4 (imputation) not giving Allele Frequencies (AF) and DR2 in my output?
qc
imputation
beagle
updated 3 months ago by
aryeesethlina5
• 0 • written 18 months ago by
Olivia
• 0
1
vote
3
replies
674
views
Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ?
QC
cutadapt
Illumina
trimming
3.4
updated 19 months ago by
GenoMax
146k • written 19 months ago by
Bengisu
• 0
50 results • Page
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