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50 results • Page
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Showing top results for tag:
ped
•
reset
0
votes
0
replies
252
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
5 months ago by
Samantha
• 0
1
vote
0
replies
264
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 5 months ago by
zx8754
12k • written 6 months ago by
Emilie
▴ 10
1
vote
3
replies
2.7k
views
Problem to remove subset of patients with plink
plink
PED
updated 6 months ago by
chrchang523
11k • written 6.6 years ago by
Ginevra
▴ 10
0
votes
0
replies
214
views
Convert VCF file and add covariate information
VCF
PED
PLINK
7 months ago by
asmariyaz23
▴ 10
0
votes
0
replies
474
views
How to generate .map and .ped files (plink format for further analysis) from callcode files (APT) ? or else?
APT
PLINK
PED
MAP
12 months ago by
tvibhaps
▴ 10
0
votes
1
reply
461
views
PLINK ped file
ped
GWAS
summarystats
PLINK
map
updated 20 months ago by
Fabio Marroni
★ 3.0k • written 20 months ago by
loy_loy
▴ 10
0
votes
0
replies
353
views
make compeletly homozygous allele sample
plink
ROH
map
ped
21 months ago by
재원
• 0
0
votes
2
replies
819
views
Ped file looks weird
ped
gwas
plink
updated 23 months ago by
Ram
44k • written 23 months ago by
BQ
• 0
0
votes
0
replies
508
views
Merge Plink Datasets
snparray
ped
goatgenome
illuminarray
plink
24 months ago by
Umer
▴ 120
1
vote
4
replies
1.8k
views
Plink: .vcf to .ped issue (problem with polyploidy?)
polyploidy
ped
Plink
updated 19 months ago by
Ram
44k • written 2.5 years ago by
Alice
• 0
0
votes
0
replies
649
views
Running ADMIXTURE on .ped files
ped
bed
ADMIXTURE
plink
Stacks
2.4 years ago by
Austin
• 0
0
votes
0
replies
460
views
Using PLINK for (ROH) analysis using full genome
map
ped
vcf
roh
plink
updated 2.5 years ago by
GenoMax
146k • written 2.5 years ago by
taimur.al-said
▴ 10
1
vote
1
reply
778
views
Problem with the total number of variants in my .map .ped files from PLINK
PLINK
map
ped
updated 2.5 years ago by
Ram
44k • written 2.5 years ago by
elielsonveloso
• 0
0
votes
1
reply
701
views
Removing specific line number in Plink Map/Ped files
map
Plink1.9
ped
Plink
Plink2.0
updated 2.6 years ago by
chrchang523
11k • written 2.6 years ago by
zoe.bell
• 0
4
votes
4
replies
1.1k
views
PLINK .ped file from vcf file with 2 alleles
PLINK
PED
VCF
updated 19 months ago by
Ram
44k • written 2.6 years ago by
Liubov
▴ 20
1
vote
2
replies
1.6k
views
Confused about PED and MAP file
PED
PLINK
MAP
detectRUNS
2.8 years ago by
Begonia_pavonina
▴ 200
0
votes
0
replies
537
views
How to convert a file in STRUCTURE format to plink format ,ped and .map?
map
ped
plink
STRUCTURE
2.8 years ago by
nacho.martin.videla
• 0
0
votes
2
replies
1.4k
views
How to make .ped and .map files
MAP
GWAS
PLINK
PED
updated 19 months ago by
Ram
44k • written 3.0 years ago by
s.labuschagne96
• 0
0
votes
0
replies
513
views
Why does write.ped remove the first locus?
ped
plink
hierfstat
vcf
genetics
3.0 years ago by
DanielEB_fisk
▴ 20
3
votes
2
replies
1.6k
views
How to convert multiple .vcf files into single .ped (PLINK compatible files)?
vcf
ped
PLINK
WGS
updated 19 months ago by
Ram
44k • written 3.1 years ago by
isml2688
▴ 20
2
votes
2
replies
841
views
How do I call compound hetrozygosity from multiple trios cohort?
ped
gatk
trio
heterozygosity
compound
vcf
3.4 years ago by
DareDevil
★ 4.3k
0
votes
3
replies
1.7k
views
Problem to convert genotypes to plink format from bcftools
vcf
bcftools
ped
plink
beagle
updated 19 months ago by
Manuel Ramón
▴ 10 • written 3.5 years ago by
Alejandro
▴ 10
0
votes
0
replies
580
views
how to convert ped files to cnv
convertit
cnv
ped
3.7 years ago by
iag.14800108
• 0
8
votes
1
reply
1.3k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors
gatk
trio
ped
3.8 years ago by
DareDevil
★ 4.3k
0
votes
3
replies
927
views
monozygotic twins ped file specification
twin
ped
pedigree
GATK
3.9 years ago by
cocchi.e89
▴ 280
2
votes
3
replies
1.1k
views
Problems awking columns from map file
awk
unix
map
ped
convertf
updated 4.1 years ago by
Bastien Hervé
5.8k • written 4.1 years ago by
Nuthatch
• 0
3
votes
5
replies
4.0k
views
How to extract a subset of samples from plink .bed files
plink
ped
bed
4.1 years ago by
eyb
▴ 270
3
votes
5
replies
1.0k
views
How to check if a word is present in a column of a .ped file
ped
bash
updated 4.2 years ago by
chrchang523
11k • written 4.2 years ago by
Nuthatch
• 0
1
vote
1
reply
1.0k
views
Problems removing a subset of individuals from ped files
plink
remove
ped
4.2 years ago by
Nuthatch
• 0
7
votes
8
replies
10k
views
Plink Raw Format To Ped Format
plink
snps
ped
updated 5.1 years ago by
klkeysb
▴ 20 • written 11.1 years ago by
kapoor.manav
▴ 40
0
votes
0
replies
923
views
SNPduo error reading ped files
IBS
genome
SNPduo
ped
updated 19 months ago by
Ram
44k • written 5.2 years ago by
amitgourav.ghosh12
▴ 70
0
votes
1
reply
2.5k
views
admixTools convertf error on ped file: "snp order check fail; snp list not ordered"
convertf
ped
snp
admixtools
updated 19 months ago by
Ram
44k • written 5.3 years ago by
jcolella.jc
• 0
0
votes
0
replies
957
views
Calculating Kappa value between two SNP matrices in R
SNP
GWAS
R
PED
kappa
5.5 years ago by
elite420
• 0
6
votes
2
replies
4.3k
views
Simple Question About .Ped Format For Gatk And Plink
ped
exome
gatk
plink
updated 5.5 years ago by
Biostar
20 • written 11.8 years ago by
el2622
• 0
0
votes
0
replies
758
views
DGRP data set
DGRP
Bimfile
mapfile
ped
5.6 years ago by
mvanligten14
• 0
6
votes
4
replies
14k
views
How can I convert .ped file to bed+bim+fam file using plink 1.9?
plink
SNP
next-gen
gene
ped
updated 5.6 years ago by
GenoMax
146k • written 5.6 years ago by
sofie_carolina
▴ 30
22
votes
4
replies
55k
views
Convert VCFf file to plink ped/map format while filtering the SNPs
vcftools
plink
ped
map
updated 5.7 years ago by
hakimeazarafra
• 0 • written 10.1 years ago by
roll
▴ 350
5
votes
3
replies
14k
views
Fail to open file in plink
ped
plink
updated 5.7 years ago by
zx8754
12k • written 7.2 years ago by
janhuang.cn
▴ 230
29
votes
37
replies
4.0k
views
8 follow
Perl/Python script: phased vcf to phased tped
vcf
ped
phased
6.0 years ago by
Shicheng Guo
★ 9.5k
0
votes
0
replies
1.1k
views
how to deal with 0 in allele from ped/map files
plink
ped
map
6.0 years ago by
Victor
▴ 10
4
votes
5
replies
7.6k
views
How to convert txt or csv files into ped files?
plink
ped
R
python
updated 6.1 years ago by
zx8754
12k • written 6.3 years ago by
sjunlee89
▴ 10
8
votes
2
replies
4.7k
views
Impute: File Formats ?
haplotype
ped
linkage
updated 6.1 years ago by
Ram
44k • written 14.3 years ago by
Pierre Lindenbaum
164k
0
votes
1
reply
1.3k
views
Extract metadata from .ped and .map file
metadata
ped
plink
map
updated 19 months ago by
Ram
44k • written 6.2 years ago by
aiteteji
▴ 10
0
votes
1
reply
1.6k
views
make ped file from SNPChip final_report
snp
plink
ped
updated 6.2 years ago by
Biostar
20 • written 6.3 years ago by
mary
▴ 210
0
votes
2
replies
1.9k
views
make ped file
ped
updated 6.3 years ago by
Pierre Lindenbaum
164k • written 6.3 years ago by
keivanrz
• 0
8
votes
5
replies
20k
views
How To Convert .Ped To .Vcf File
vcf
ped
updated 15 months ago by
Ram
44k • written 12.4 years ago by
cbm
▴ 20
1
vote
5
replies
13k
views
Remove Duplicate Individuals From Plink Ped File Using Plink
plink
genotype
gwas
ped
updated 6.6 years ago by
Ginevra
▴ 10 • written 10.8 years ago by
venks
▴ 740
0
votes
0
replies
1.7k
views
linkage disequilibrium of snps using plink
ped
linkage-disequilibrium
SNP
plink
map
updated 19 months ago by
Ram
44k • written 6.7 years ago by
14311a2301
• 0
2
votes
4
replies
2.9k
views
Using snpStats to read a pedfile, object 'm' not found
R
plink
ped
updated 6.7 years ago by
Kevin Blighe
88k • written 8.0 years ago by
nadrianam
▴ 40
2
votes
3
replies
9.2k
views
Reading a .ped file in R?
ped
R
plink
updated 6.7 years ago by
fatmasayed93
• 0 • written 8.0 years ago by
nadrianam
▴ 40
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