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Showing top results for tag: paired-end • reset
2
votes
3
replies
379
views
Paired-end sequencing with inconsistent quality/number of reads
paired-end NGS STAR flowcell alignment
4 days ago by anissa • 0
0
votes
3
replies
369
views
Cross-strand correlation for paired-end ChIP-seq data
paired-end ChIP-seq RelCC single-end
updated 4 weeks ago by 4.3k • written 4 weeks ago by • 0
0
votes
1
reply
315
views
Integration of paired and single-end SRA
Paired-end Single-end VCF Resequencing
updated 6 weeks ago by 20k • written 6 weeks ago by ▴ 300
2
votes
4
replies
356
views
One SRR (one fastq) file for pair-end layout
SRR paired-end SRA
12 weeks ago by Vojtěch ▴ 10
4
votes
6
replies
577
views
How to check if all read names are paired properly in paired end fastq.gz files?
samtools illumina paired-end
updated 3 months ago by 4.3k • written 3 months ago by ▴ 250
1
vote
2
replies
313
views
How to figure out adapter sequence to use for trimming old miRNAseq data
paired-end fastq rna-seq mirna-seq trimming
3 months ago by hsothers • 0
1
vote
3
replies
799
views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
PE BAM SAM flag paired-end
5 months ago by kalavattam ▴ 270
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end
updated 5 months ago by • 0 • written 6.9 years ago by ▴ 130
1
vote
4
replies
987
views
Understanding STAR output (Aligned.out.sam file)
STAR paired-end read
5 months ago by heelpPlease • 0
3
votes
7
replies
708
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc cutadapt illumina tile paired-end
6 months ago by Sergio A.S. ▴ 10
4
votes
4
replies
599
views
Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
illumina RNA-seq paired-end
updated 7 months ago by 20k • written 7 months ago by ▴ 80
2
votes
5
replies
931
views
Weird Fragment Length distribution multiQC
Salmon RNA-seq paired-end MultiQC
updated 7 months ago by 146k • written 8 months ago by • 0
0
votes
1
reply
349
views
Which FLASH parameters to use?
paired-end flash single-end merged
updated 8 months ago by 146k • written 8 months ago by • 0
0
votes
2
replies
706
views
invalid deflate data (invalid code lengths set)
Paired-End Trimming Fastq TrimGalore
updated 9 months ago by 44k • written 9 months ago by ▴ 10
9
votes
7
replies
1.6k
views
Trying to wrap my head around Illumina paired end sequencing
paired-end illumina sequencing
updated 9 months ago by 101k • written 9 months ago by ▴ 10
3
votes
7
replies
1.1k
views
"C++ compiler cannot create executables", while installing ABySS 2.0 assembler
assembly illumina abyss btllib paired-end
updated 9 months ago by ★ 1.4k • written 10 months ago by ▴ 60
2
votes
1
reply
444
views
Shorten Illumina reads
RepeatExplorer2 Illumina paired-end
updated 11 months ago by 20k • written 11 months ago by ▴ 40
0
votes
2
replies
506
views
Doubt about RNASeq Paired-end process
RNASEQ NGS Paired-end
11 months ago by Vicent • 0
0
votes
0
replies
342
views
Query about ALLHiC tutorial data format
allhic paired-end
12 months ago by mbeavitt • 0
1
vote
1
reply
730
views
Filtering for primary and secondary reads using sam flags (0 properly paired reads in alignment step)
freebayes samtools samflags sam paired-end
updated 12 months ago by ▴ 340 • written 12 months ago by ▴ 10
1
vote
1
reply
711
views
bedGraph for Coverage of Insert from Paired-End Data?
genome awk coverage bed paired-end
updated 13 months ago by ★ 1.4k • written 13 months ago by ▴ 40
6
votes
8
replies
1.3k
views
Quantify the number of sequences in common paired-end sequencing data
fastq paired-end
updated 13 months ago by 44k • written 13 months ago by ▴ 50
2
votes
7
replies
1.7k
views
VG mapping paired-end reads: error [xg]: multiple hits for XXX
variation-graph reads pangenome vg paired-end
14 months ago by nkls063408 • 0
2
votes
7
replies
1.1k
views
Automatically detecting paired end reads.
pipeline automation paired-end single-end fastq
updated 16 months ago by 44k • written 16 months ago by • 0
4
votes
5
replies
14k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end fastq rna-seq illumina
updated 17 months ago by 44k • written 11.6 years ago by ▴ 770
2
votes
4
replies
1.2k
views
Different total number of sequences between the two PE fastq files
NGS RNA-Seq Paired-End
updated 17 months ago by 146k • written 17 months ago by • 0
4
votes
7
replies
1.3k
views
Combining data from single- and paired-end sequencing done on same samples
bulk Illumina RNA-seq System Ovation single-end NextSeq 550 paired-end Universal
18 months ago by tise.suz ▴ 10
0
votes
1
reply
724
views
Discordinant aligment
Paired-end HISAT2
updated 19 months ago by 101k • written 19 months ago by • 0
0
votes
1
reply
416
views
poly A in paired end reads
polyA paired-end
updated 20 months ago by 44k • written 20 months ago by • 0
1
vote
2
replies
985
views
BBMap/sh/repair.sh not finding pairs
BBMap fastq repair paired-end repair.sh
updated 20 months ago by 4.9k • written 20 months ago by • 0
5
votes
3
replies
1.1k
views
Paired - end sequencing
NGS Paired-end Illumina
updated 22 months ago by ▴ 280 • written 22 months ago by ▴ 50
0
votes
5
replies
1.2k
views
Filter only overlapping portion of read pairs?
bisulfite paired-end
updated 22 months ago by ▴ 410 • written 22 months ago by • 0
4
votes
0
replies
752
views
Convert ONE pair-end BAM file to ONE single-end BAM file with merged mates (i.e. merging the paired reads coverage)
MACS2 BAM paired-end single-end
updated 15 months ago by 44k • written 24 months ago by ★ 1.3k
1
vote
2
replies
762
views
Low merging rate of 16S PE reads, possibly overrepresented seqs?
FastQC Illumina 16S overrepresented paired-end
2.0 years ago by A • 0
2
votes
2
replies
1.3k
views
Concatenate multiple paired-end reads or interleaved which is best approach to align with BWA-mem2
interleaved paired-end bwa-mem2
2.1 years ago by ben@f ▴ 20
17
votes
6
replies
2.0k
views
Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM)
Mutect2 RNA-seq mutation paired-end variant
2.1 years ago by Chilly ★ 1.3k
14
votes
8
replies
19k
views
TrimGalore! on multiple paired fastq files
rna-seq trimgalore! paired-end script
updated 23 months ago by 44k • written 8.1 years ago by ▴ 90
0
votes
0
replies
355
views
Unampped paired-end reads in STAR
Paired-End RNA-Seq STAR Alignment PE
2.1 years ago by ilovesuperheroes1993 ▴ 40
4
votes
3
replies
2.3k
views
bbduk paired-end RNA-seq trimming command
rna-seq paired-end bbduk trimming adapter
updated 2.2 years ago by 146k • written 2.2 years ago by ★ 2.0k
2
votes
3
replies
869
views
mapping paired end data
paired-end bam bowtie mapping
updated 19 months ago by 44k • written 2.2 years ago by ▴ 20
1
vote
1
reply
545
views
Getting .bed file
fastq bed paired-end
updated 2.2 years ago by 10k • written 2.2 years ago by ▴ 20
2
votes
13
replies
3.7k
views
[RNAseq, featureCounts] Can paired-end data be processed as single end?
paired-end RNAseq featureCounts
2.2 years ago by Texx • 0
1
vote
2
replies
1.3k
views
Matching R1 and R2 in paired end reads from Illumina
illumina reads paired-end
2.3 years ago by Priyanka ▴ 10
13
votes
8
replies
1.9k
views
6 follow
paired end mapping with one end being unique and the other end multiple
paired-end genome ngs
updated 2.1 years ago by ★ 2.9k • written 2.5 years ago by • 0
1
vote
1
reply
881
views
How to do Fastq quality control on paired-end samples?
QC paired-end fastqc rna-seq
updated 2.5 years ago by 85k • written 2.5 years ago by ▴ 10
0
votes
1
reply
579
views
Paired-end dataset from SRA database
paired-end sra
updated 2.5 years ago by 85k • written 2.5 years ago by ▴ 70
0
votes
6
replies
3.4k
views
Replacing Illumina index in header of reads
next-gen-sequencing paired-end
updated 2.3 years ago by 44k • written 6.9 years ago by • 0
0
votes
0
replies
375
views
bowtie2 paired-end behavior where one mate aligns uniquely and one mate aligns multiple times?
paired paired-end bowtie2 multiple
2.7 years ago by Ryan • 0
1
vote
3
replies
2.0k
views
how to align paired and unpaired fastq files of a sample using STAR?
Paired-end STAR Alignment
updated 2.8 years ago by 14k • written 2.8 years ago by ▴ 20
1
vote
1
reply
568
views
Paired-end sequnces of 16S rRNA are not merged.
Flash paired-end rRNA sequnces 16S
updated 2.9 years ago by 6.8k • written 2.9 years ago by • 0
50 results • Page 1 of 1
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