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47 results • Page
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Showing top results for tag:
otu
•
reset
0
votes
0
replies
255
views
Number of ESVs greater than OTUs'?
denoising
otu
asv
8 weeks ago by
alenew.am
▴ 10
0
votes
0
replies
192
views
Automated analysis of amplicon sequence datasets from multiple FASTQ files
DADA2
AMPLICON
OTU
ASV
4 months ago by
Bio_12
• 0
0
votes
0
replies
323
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
6 months ago by
Ali
• 0
0
votes
1
reply
442
views
Merge microbiota data
microbiota
OTU
updated 14 months ago by
Ram
44k • written 14 months ago by
shamila.ismael
• 0
2
votes
2
replies
1.5k
views
OTU, ASV and Kraken2
OTU
metagenomics
ASV
kraken2
updated 16 months ago by
Asaf
10k • written 16 months ago by
Mgs3
▴ 30
0
votes
0
replies
448
views
Problem importing otu.fasta file into qiime
otu
featuredatasequence
qiime2
2.1 years ago by
noobiestar
▴ 30
1
vote
3
replies
1.4k
views
Is it required for all sequences to be same length when clustering OTUs in metagenomics (ONT Nanopore)
otu
metagenomics
clustering
nanopore
updated 2.2 years ago by
antonioggsousa
3.2k • written 2.2 years ago by
O.rka
▴ 740
2
votes
5
replies
3.8k
views
OTU Table Extraction from Phyloseq Object
OTu
Table
Phyloseq
updated 2.4 years ago by
Asaf
10k • written 2.4 years ago by
safiq713
▴ 10
2
votes
1
reply
1.1k
views
SourceTracker2
OTU
sourcetracker2
updated 2.4 years ago by
Zina
▴ 20 • written 2.6 years ago by
Giulia.cosenza
▴ 110
0
votes
1
reply
641
views
merging multiple frequencies tables
otu
table
merging
frequencies
3.1 years ago by
Lapsus
• 0
4
votes
5
replies
2.2k
views
How to create an OTU table out of phyla abundance?
microbiome
OTU
diversity
updated 3.5 years ago by
antonioggsousa
3.2k • written 3.5 years ago by
Hashirama
▴ 20
0
votes
0
replies
514
views
Measuring diffeences in specific OUTs instead of full smaples in quiime2
OTU
quiime2
3.5 years ago by
blur
▴ 280
0
votes
3
replies
2.3k
views
Can you generate ASVs from pre-merged paired-end reads?
ASV
OTU
dada2
qiime2
16S
updated 3.7 years ago by
AfinaM
▴ 30 • written 3.7 years ago by
sambjohnson94
• 0
0
votes
9
replies
1.0k
views
Help on local alignment. Is there any way to automate the process?
NCBI
OTU
metabarcoding
next-gen
alignment
updated 3.7 years ago by
Biostar
20 • written 3.8 years ago by
Kinoppy
• 0
0
votes
0
replies
1.0k
views
Which diversity index for relative abundance data?
Statistics
R
metagenomics
OTU
phyloseq
3.8 years ago by
mario_de_manner
▴ 20
1
vote
2
replies
3.2k
views
Greengenes OTU ID
greengenes
otu
updated 3.9 years ago by
antonioggsousa
3.2k • written 3.9 years ago by
dannytang84
• 0
14
votes
7
replies
13k
views
What is an OTU?
otu
updated 4.3 years ago by
Joe
21k • written 4.3 years ago by
linnet.roque6
▴ 10
0
votes
2
replies
2.8k
views
filter OTU table based on absolute abundance
metabarcoding
microbiome
OTU
updated 4.3 years ago by
antonioggsousa
3.2k • written 4.3 years ago by
annaA
▴ 10
0
votes
1
reply
908
views
Number of OTUs obtained from mothur analysis
mothur
16s
otu
4.4 years ago by
dpc
▴ 250
0
votes
0
replies
1.1k
views
identify total number of OTUs and total number of reads
otu
otu table summarize
updated 5.2 years ago by
Ram
44k • written 5.2 years ago by
dimmalikrisha123
• 0
0
votes
0
replies
1.8k
views
USEARCH v11alpha_div_rare and -otutab_octave commands
usearch
OTU
MiSeq
metabarcoding
5.4 years ago by
sbombin
▴ 10
0
votes
0
replies
946
views
How to plot the correlations between OTUs and genes?
igraph
otu
gene
network
5.4 years ago by
pablo
▴ 310
3
votes
2
replies
4.1k
views
choose between normalization techniques for OTU counts
OTU
sequencing
updated 5.6 years ago by
erwan.scaon
▴ 950 • written 6.7 years ago by
a1788
▴ 10
1
vote
3
replies
2.6k
views
Pick De Novo OTUs Qiime
qiime
OTU
updated 6.0 years ago by
ankit hinsu
▴ 10 • written 8.3 years ago by
Ruth M.
▴ 10
0
votes
0
replies
897
views
Help with species level ID (L 7) in qiime
metagenomics
microbiome
OTU
6.0 years ago by
lkw222
▴ 30
1
vote
1
reply
1.6k
views
microbiome taxon abundance
OTU
taxon
updated 6.0 years ago by
Biostar
20 • written 6.2 years ago by
chengyi31000
▴ 10
0
votes
1
reply
1.4k
views
Can I convert a species to otu?
taxonomy
16S
OTU
updated 6.1 years ago by
lakhujanivijay
5.9k • written 6.8 years ago by
jeremy.cox.2
▴ 130
2
votes
1
reply
1.4k
views
Normalisation of read mapping counts to account for contig length
metagenome
normalisation
read mapping
OTU
updated 9 weeks ago by
SergFly
▴ 50 • written 6.3 years ago by
valerie
▴ 20
6
votes
4
replies
3.0k
views
Removing unassigned OTUs
R
phyloseq
microbiome
OTU
next-gen
updated 6.3 years ago by
zx8754
12k • written 6.3 years ago by
rahulgenexpress
▴ 10
1
vote
1
reply
2.0k
views
16S rRNA de novo otu picking analysis
sequencing
16S
Qiime
de novo
otu
updated 6.6 years ago by
5heikki
11k • written 6.6 years ago by
dcron13
▴ 10
0
votes
2
replies
4.3k
views
Relabel/rename OTU IDs in an OTU table using a taxonomy file
sequencing
rename
relabel
taxonomy
OTU
6.7 years ago by
jack1120
▴ 30
1
vote
3
replies
2.1k
views
How to map taxonomy to OTUs
trnL
otu
taxonomy table
6.8 years ago by
xioli2013
▴ 10
0
votes
5
replies
2.4k
views
Change OTU names to taxon names
OTU
Taxon
7.0 years ago by
mollysil
▴ 40
4
votes
5
replies
2.2k
views
How to retrieve rows from OTU table
OTU
Rows
updated 7.0 years ago by
5heikki
11k • written 7.0 years ago by
mollysil
▴ 40
0
votes
4
replies
2.4k
views
Heat map qiime
sequencing
biom
otu
heatmap
qiime
7.2 years ago by
arunsaikirans
• 0
0
votes
2
replies
1.8k
views
meta-analysis: can I still combine the 2 studies?
meta-analysis
microbiome
16S
ComBat
OTU
7.4 years ago by
alowi33
▴ 50
2
votes
2
replies
4.6k
views
Greengene : what is the "99" in OTU description?
greengenge
otu
taxonomy
updated 7.5 years ago by
timodonnell
▴ 80 • written 7.6 years ago by
sacha
★ 2.4k
0
votes
2
replies
2.2k
views
QIIME: OTU-picking works way too long
qiime
otu
16s
7.9 years ago by
lotus28
▴ 70
0
votes
1
reply
3.2k
views
Tool:
QIIME pick_closed_reference_otus output: why not mapped reads?
taxonomy
silva
qiime
otu
updated 16 months ago by
Ram
44k • written 8.3 years ago by
DaniCee
▴ 20
2
votes
1
reply
1.9k
views
USEARCH in small batches?
microbiome
usearch
qiime
otu
chimera
updated 8.4 years ago by
Bioinformatics_NewComer
▴ 330 • written 8.4 years ago by
Ronald Rodriguez
▴ 20
2
votes
1
reply
2.9k
views
How can I classify OTUs to "SPECIES" level with mothur?
mothur
OTU
species
16s rRNA
updated 8.5 years ago by
agata88
▴ 870 • written 8.5 years ago by
Clark_BioMorgan
▴ 50
0
votes
0
replies
1.2k
views
Picking OTU's with samples generated by different primers that overlap
qiime
otu
8.6 years ago by
nathalimachadolima
▴ 10
0
votes
1
reply
5.4k
views
DESeq2 to analyse OTU differential abundance
differential-abundance
OTU
DeSeq2
updated 2.4 years ago by
Ram
44k • written 9.0 years ago by
sarahmacdonald86
• 0
0
votes
0
replies
2.1k
views
OTU distances and assumptions
Phylogenetics
Scoring
Clustering
Distance
OTU
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
jnf3769
▴ 40
0
votes
0
replies
1.5k
views
Annotation of sequences with uparse_ref hanging on the classifying step
Taxonomy
microbiome
uparse_ref
uparse
OTU
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
Thomas Moody
▴ 30
1
vote
0
replies
2.0k
views
Best strategy for matching OTU sequences from different runs?
OTU
454
Illumina
Mothur
9.3 years ago by
rodrigues.pap
▴ 10
0
votes
2
replies
3.0k
views
relating variables to OTUs
OTU
statistics
next-gen
R
updated 22 months ago by
Ram
44k • written 9.4 years ago by
Furor
▴ 40
47 results • Page
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