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Showing top results for tag: mummer • reset
0
votes
2
replies
457
views
How to convert Mummer coords output to a Bed file?
nucmer mummer bed
updated 8 months ago by 44k • written 8 months ago by ▴ 290
11
votes
3
replies
998
views
Whole genome comparison of two closely related plant species
mummer comparative-genomics whole-genome-alignment whole-genome-comparison mauve
updated 18 months ago by ▴ 60 • written 18 months ago by ▴ 340
1
vote
1
reply
1.2k
views
nucmer and promer plots generated via mummerplot look identical?
nucmer mummerplot promer mummer
updated 2.0 years ago by 101k • written 2.0 years ago by • 0
5
votes
2
replies
5.9k
views
How should I interpret this Mummer output files?
mapping mummer show-coords
updated 2.4 years ago by ▴ 20 • written 10.4 years ago by ▴ 690
0
votes
4
replies
872
views
Mummer
Mummer
updated 2.4 years ago by 6.2k • written 2.5 years ago by • 0
1
vote
1
reply
505
views
Best sequence alignment tool
BWA alignment MUSCLE Sequence MUMmer
updated 2.5 years ago by 146k • written 2.5 years ago by ▴ 10
1
vote
1
reply
878
views
How to visualize mummerplot results
mummer
updated 2.6 years ago by 101k • written 2.6 years ago by • 0
0
votes
0
replies
509
views
Finding indel at end of contig with nucmer
mummer snps indel nucmer
2.7 years ago by kmyers2 ▴ 90
5
votes
8
replies
7.7k
views
6 follow
Tool: Converting MUMmer snps file to a real VCF file
VCF mummer SNP
updated 16 months ago by 44k • written 5.2 years ago by ★ 3.6k
1
vote
4
replies
1.3k
views
Improving genome assemblies with mummer/nucmer?
assembly nucmer mummer genome
2.8 years ago by zhousun21 ▴ 40
2
votes
1
reply
912
views
R package for structural variation representation ?
structural variation mummer
updated 3.2 years ago by 4.0k • written 3.2 years ago by ▴ 650
2
votes
3
replies
2.2k
views
Is it possible to do mummerplot with reference and query sequences that have many contigs?
alignment mummer mummerplot
updated 3.2 years ago by 8.7k • written 3.2 years ago by ▴ 10
3
votes
1
reply
1.4k
views
Tool: all2vcf: a tool to convert non-standard variant outputs (mummer. bcftools isec) to VCF
mummer isec variant bcftools VCF
updated 2.0 years ago by • 0 • written 3.3 years ago by ★ 3.6k
2
votes
3
replies
1.5k
views
Converting .delta file from NUCMER to format accepted by IGV? (.bam/.vcf)
NUCMER IGV SAMtools MUMMER
3.3 years ago by Joanna • 0
4
votes
5
replies
2.4k
views
Command to parse mummer coords file
mummer nucmer
updated 3.4 years ago by ▴ 20 • written 5.0 years ago by ▴ 80
2
votes
4
replies
959
views
What is the meaning of the name MUMmer ?
Mummerplot Dna Alignment Mummer Sequence
3.4 years ago by Student ▴ 30
0
votes
0
replies
883
views
What is the file .mums created by mummer ?
Mummer Alignment Mummerplot Genome
updated 3.4 years ago by 44k • written 3.4 years ago by ▴ 30
0
votes
0
replies
634
views
remove from mummerplot some contigs
mummerplot mummer
3.5 years ago by shinken123 ▴ 150
0
votes
0
replies
1.1k
views
mummerplot - providing ranges for x and y axes
mummer nucmer mummerplot
updated 3.6 years ago by 44k • written 3.7 years ago by ▴ 70
1
vote
5
replies
2.8k
views
mummerplot results interpretation
mummer mummerplot alignment bash
3.7 years ago by langziv ▴ 70
0
votes
0
replies
742
views
MUMmer for structural variant call
MUMmer structural variants circlator
3.7 years ago by rthapa ▴ 90
1
vote
2
replies
1.5k
views
Error wiht MUMMER mapview
Mummer mapview genome
updated 3.8 years ago by • 0 • written 5.7 years ago by ▴ 170
0
votes
4
replies
971
views
Mapping a draft sequence to a finished sequence using MUMmer.
MUMmer
4.0 years ago by sharmatina189059 ▴ 110
2
votes
2
replies
1.1k
views
Bray-Curtis dissimilarity for comparing genomes, how to normalize?
genome mummer bray-curtis normalization sorensen
4.1 years ago by Buffo ★ 2.4k
1
vote
2
replies
1.2k
views
MUMmer alignment result interpretation
MUMmer Nucmer genome alignment
4.6 years ago by AP ▴ 80
0
votes
3
replies
1.4k
views
MUMmer . Global alignment
alignment MUMmer sequencing
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 20
4
votes
5
replies
1.9k
views
MUMmer alignments: Trying to understand the average identity result
MUMmer de novo assembly average identity
updated 5.0 years ago by 101k • written 5.0 years ago by ▴ 20
0
votes
0
replies
651
views
How does Dnadiff deal with gap penalties?
MUMmer dnadiff alignments gap penalties
5.0 years ago by caro-ca ▴ 20
1
vote
0
replies
1.7k
views
Mummer for running multiple query files
MUMmer Nucmer Assembly alignment
5.0 years ago by AP ▴ 80
0
votes
0
replies
1.1k
views
MUMmer overall identity & output
MUMmer nucmer species
5.1 years ago by yp19 ▴ 70
1
vote
7
replies
4.0k
views
mummer dot plot
mummer dotplot
5.1 years ago by David ▴ 240
4
votes
3
replies
2.7k
views
Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
contig bacteria spades mummer SNP
updated 5.2 years ago by 21k • written 5.2 years ago by ▴ 200
6
votes
5
replies
1.9k
views
Sequence identity between sequences with different lengths
sequence identity alignment filter mummer
updated 5.7 years ago by 5.8k • written 5.7 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Alternative to mummerplot
mummer mummerplot
updated 5.8 years ago by ★ 2.5k • written 5.8 years ago by • 0
4
votes
2
replies
4.8k
views
mummerplot for genome self alignment NOT yielding full length diagonal graph
mummer nucmer mummerplot genome alignment
5.8 years ago by Anand Rao ▴ 640
0
votes
0
replies
2.1k
views
difference between mummer --mum and delta-filter -r -q
mummer nucmer genome alignment alignment
5.9 years ago by ersgupta • 0
4
votes
7
replies
2.6k
views
compare two list of nucleotide sequences
blast bowtie mummer sequence
updated 6.1 years ago by 21k • written 6.1 years ago by ▴ 130
0
votes
2
replies
1.6k
views
Remove sequences without alignment in mummerplot
mummer mummerplot
6.3 years ago by Corentin ▴ 610
0
votes
2
replies
1.4k
views
InDel marker using GATK and Mummer
genome sequence gatk mummer
updated 6.6 years ago by ★ 1.2k • written 6.6 years ago by • 0
0
votes
5
replies
2.7k
views
Inverse mutation: Is Mummer output conclusive proof of inversion
Inversion inverse mutation mummer mutation
6.6 years ago by ambi1999 ▴ 50
8
votes
7
replies
5.5k
views
Using MUMmer 3.9.4
MUMmer software error
updated 6.9 years ago by 20 • written 7.7 years ago by ▴ 130
0
votes
2
replies
1.9k
views
mummer results merging
mummer nucmer
7.0 years ago by Ric ▴ 440
0
votes
3
replies
2.3k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer Assembly alignment
7.0 years ago by YOUSEUFS ▴ 30
3
votes
4
replies
3.6k
views
Align two microbial genomes -- is mummer still the way to go?
genome alignment mummer nucmer snps vcf
7.2 years ago by Lina F ▴ 200
2
votes
3
replies
2.5k
views
Reliable alignment tool for similar sequences of similar length other than Mummer?
alignment Mummer
updated 7.4 years ago by ★ 1.1k • written 8.5 years ago by ▴ 260
0
votes
1
reply
2.6k
views
Problem installing mummer
install mummer alignment nucmer
updated 7.4 years ago by 20 • written 7.4 years ago by ▴ 410
3
votes
5
replies
3.2k
views
Can't find show-aligns in mummer
mummer nucmer show-aligns allignment
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 410
0
votes
0
replies
1.8k
views
mummerplot fails after modifying delta file headers
mummer sed mummerplot
7.5 years ago by Srw ▴ 60
0
votes
1
reply
2.5k
views
Group a set of plots using MUMmer
alignment mummer mummer-plot
updated 7.8 years ago by ▴ 740 • written 7.8 years ago by ★ 1.4k
1
vote
3
replies
2.4k
views
Can NUCmer align a short sequence with a much longer sequence (local alignment)?
nucmer mummer local alignment
8.1 years ago by nchuang ▴ 260
50 results • Page 1 of 1
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