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Showing top results for tag:
mrbayes
•
reset
0
votes
0
replies
177
views
MrBayes 3.2.7a in mpi mode staying at stationary state from the beginning
mpi
mrbayes
stationary
beagle
library
3 months ago by
ricfoz
▴ 100
0
votes
6
replies
904
views
Rooting phylogenetic trees in R using Treeio's root function: Trees don't seem to root.
R
MrBayes
6 months ago by
lingxue
• 0
2
votes
2
replies
1.1k
views
Modeltest-ng and MrBayes
Modeltest
model
phylogenetics
Mrbayes
selection
15 months ago by
Francisco Pina Martins
• 0
0
votes
2
replies
900
views
mrbayes segmentation fault
mrbayes
segmentation
fault
18 months ago by
dgrace999
• 0
1
vote
3
replies
1.0k
views
mrbayes checkpoint file not starting from linux or windows after accidental closing
mrbayes
20 months ago by
omaridris5315
▴ 10
2
votes
4
replies
1.8k
views
How to continue a interrupted MrBayes tree analysis?
MrBayes
updated 20 months ago by
omaridris5315
▴ 10 • written 20 months ago by
超
• 0
3
votes
2
replies
1.9k
views
MrBayes - big difference in average standard deviation of split frequencies between CPU and GPU versions
GPU
phylogenetics
MrBayes
22 months ago by
wstfljs
▴ 100
0
votes
0
replies
317
views
Can one enter a karyotype number into a NEXUS file?
NEXUS
MrBayes
22 months ago by
wrab425
▴ 50
0
votes
1
reply
2.0k
views
From the MrBayes tree output files, which trees tree.con file can be used? The tree1.con or tree2.con?
mrbayes
sumt
tree
updated 2.1 years ago by
Brett
• 0 • written 4.8 years ago by
willianarcunha
• 0
1
vote
4
replies
1.3k
views
Trouble Running MrBayes with GPU(s)
phylogenetics
MrBayes
Bayesian
GPU
inference
updated 2.1 years ago by
Mensur Dlakic
★ 28k • written 2.1 years ago by
CRL-CHAR
• 0
7
votes
6
replies
8.7k
views
How to run MrBayes on a Linux cluster
mpiexec
mrbayes
linux cluster
updated 2.8 years ago by
Bart Ulaszewski
▴ 110 • written 5.4 years ago by
friist
▴ 30
3
votes
7
replies
8.3k
views
6 follow
Converting *.con.tre into Newick format
Posterior-probability
MrBayes
Newick
updated 14 months ago by
Ram
44k • written 8.4 years ago by
jee-wee
▴ 20
3
votes
1
reply
680
views
MrBayes default evolutionary model
mrbayes
evolutionary
model
updated 2.9 years ago by
Mensur Dlakic
★ 28k • written 2.9 years ago by
Kash
▴ 110
4
votes
11
replies
2.3k
views
What does it "mean" when MrBayes chooses rtREV as substitution model?
mrbayes
substitution
phylogeny
matrix
2.9 years ago by
Michael
55k
1
vote
2
replies
939
views
Start with MrBayes
MrBayes
updated 3.2 years ago by
Sej Modha
5.3k • written 3.2 years ago by
Maria
• 0
0
votes
1
reply
928
views
MrBayes Stepping-stone analysis error: DEBUG ERROR: Log likelihood nan after move 'Slider(Ratemultiplier{all})'
stepping-stone
mrbayes
3.4 years ago by
klo
• 0
0
votes
2
replies
731
views
Help with MrBayes parameters
Mrbayes
updated 3.5 years ago by
Mensur Dlakic
★ 28k • written 3.5 years ago by
Matthew Aaron
• 0
4
votes
2
replies
1.1k
views
Help with Mr Bayes parameters for 16S phylogeny
sequence
Assembly
mrbayes
3.6 years ago by
buhbs
▴ 30
7
votes
10
replies
3.3k
views
running RAxML and MrBayes over concatinated multiple sequence alignments
RAxML
MrBayes
phylogeny
maximum likelihood
4.9 years ago by
Moses
▴ 150
2
votes
2
replies
3.1k
views
MrBayes batch scripting
mrbayes
bash
updated 5.0 years ago by
Mensur Dlakic
★ 28k • written 5.0 years ago by
DNAlias
▴ 40
1
vote
0
replies
861
views
MrBayes: placing a new branch on an existing tree
mrbayes
phylogenetics
5.0 years ago by
DNAlias
▴ 40
0
votes
1
reply
1.3k
views
Why do I get young ages (like uncalibated BLs) for node dating in MrBayes?
MrBayes
Divergence Time Dating
5.4 years ago by
17th Level Botanist
▴ 60
0
votes
1
reply
3.3k
views
Testing a force topology in mrBayes
evolutionary-analysis
mrbayes
updated 21 months ago by
Ram
44k • written 9.3 years ago by
Dr Reema Singh
▴ 160
0
votes
0
replies
1.8k
views
MrBayes - sumt - summarize tree samples in older analyses
mrbayes
sumt
5.8 years ago by
robwhite
• 0
0
votes
1
reply
2.9k
views
MrBayes Log likelihood stuck on a single value
MrBayes
Beagle
phylogenetics
updated 5.9 years ago by
uzmaabdulsalam
• 0 • written 7.7 years ago by
Whetting
★ 1.6k
1
vote
2
replies
1.3k
views
I can't open con file via tree view
mrbayes
treeview
6.0 years ago by
pakunaj
• 0
0
votes
2
replies
2.3k
views
Tuning MrBayes - Swapfreq, Nswaps, Nchains, and Temp
MrBayes
Swapfreq
Nswaps
Nchains
Temp
updated 6.0 years ago by
Ram
44k • written 6.0 years ago by
gykajan
• 0
0
votes
1
reply
2.4k
views
looking for a tree viewer useful for .con.tre file outputted from MrBayes
tree
treeviewer
MrBayes
viewer
updated 6.4 years ago by
Kevin Blighe
88k • written 6.4 years ago by
ricfoz
▴ 100
3
votes
7
replies
3.3k
views
User-defined tree in MrBayes
MrBayes
Phylogeny
Bayesian
updated 6.4 years ago by
h.mon
35k • written 6.4 years ago by
victoria_aleks
▴ 60
0
votes
0
replies
1.1k
views
Topogical hypothesis testing in mrBayes
mrbayes
topology
phylogeny
stepping stone
bayesian
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
frederikfbaert
• 0
0
votes
1
reply
2.1k
views
How to use a Mr Bayes Plugin in Geneious program
MrBayes
model selection test
geneious plugin
6.6 years ago by
leticia
• 0
0
votes
0
replies
1.8k
views
MrBayes on Kepler K40 GPU: What dependencies do I need? Beagle, MPI or both?
mrbayes
kepler
updated 3.0 years ago by
Ram
44k • written 9.0 years ago by
Arjen Ten Have
▴ 360
11
votes
10
replies
4.1k
views
Error with using mrbayes() wrapper from R package ips
R
MrBayes
ips
phylogenetics
updated 7.6 years ago by
ddiez
★ 2.0k • written 7.6 years ago by
ecolonaut
▴ 100
0
votes
0
replies
1.7k
views
Limit clade credibility in MrBayes tree
MrBayes
7.7 years ago by
mrbkc.mxc
• 0
6
votes
5
replies
4.1k
views
Alternative to MrBayes for BI phylogenetics?
phylogenentics
MrBayes
Bayesian
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
confusedious
▴ 490
0
votes
0
replies
2.5k
views
Changing the Model in MrBayes
mrbayes
7.9 years ago by
akschne3
• 0
2
votes
7
replies
8.8k
views
Programs to View MrBayes Consensus Trees
mrbayes
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
pld
5.1k
0
votes
1
reply
1.7k
views
How to get diagnostics from old MrBayes runs
MrBayes
updated 2.2 years ago by
Ram
44k • written 8.7 years ago by
coyk
▴ 10
0
votes
4
replies
2.7k
views
MrBayes MPI version and weird tree
Tree
Phylogeny
MrBayes
MPI
updated 2.2 years ago by
Ram
44k • written 8.8 years ago by
cryomics
• 0
3
votes
1
reply
2.0k
views
Phylogenetic Tree Program
Garli
Neighbor-Joining
MrBayes
PAUP
updated 20 months ago by
Ram
44k • written 9.4 years ago by
jtbelcik
• 0
1
vote
3
replies
7.2k
views
MrBayes chains converged, how to stop early?
phylogeny
bayesian
mrbayes
updated 2.0 years ago by
dongzhang0725
• 0 • written 9.4 years ago by
Adrian Pelin
★ 2.6k
0
votes
0
replies
2.9k
views
The difference between posterior probability value and Clade credibility values generated by MrBayes
MrBayes
phylogenetic tree
9.5 years ago by
YMTIO
• 0
7
votes
5
replies
12k
views
Mr. Bayes Protein Models OR How to implement prottest output in mrbayes?
mrbayes
bayesian
model
prottest
phylogenetics
updated 3.0 years ago by
Ram
44k • written 11.1 years ago by
kanwalashraf07
▴ 30
10
votes
10
replies
10k
views
MrBayes: Implementing the LG model
mrbayes
prottest
substitution
updated 9.8 years ago by
Michael
55k • written 10.5 years ago by
Adrian Pelin
★ 2.6k
1
vote
1
reply
1.8k
views
Difference of parallel Mrbayes results between SUSE and Ubuntu
Mrbayes
Ubuntu
SUSE
MPICH2
updated 9.8 years ago by
5heikki
11k • written 9.8 years ago by
Ginsea Chen
▴ 140
2
votes
2
replies
1.9k
views
No split frequencies were shown in terminal when Mrbayes were set as " 1 runs and 8 chains"
Mrbayes
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
Ginsea Chen
▴ 140
0
votes
0
replies
2.4k
views
Some problems by using Mrbayes with MPICH2
Mrbayes
SUSE
ubuntu
MPICH2
updated 3.5 years ago by
Ram
44k • written 10.1 years ago by
Ginsea Chen
▴ 140
3
votes
2
replies
5.6k
views
50% credibility Bayesian tree
Phylogeny
MrBayes
Consensus-tree
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
Arjen Ten Have
▴ 360
3
votes
4
replies
3.1k
views
Some errors about Mrbayes-3.2.2 parallel version (MPICH2) install on Ubuntu PC
Mrbayes
MPICH2
Ubuntu
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
Ginsea Chen
▴ 140
3
votes
0
replies
5.2k
views
Tool:
GUI for MrBayes
Phylogenetic-analyses
MrBayes
Bayesian-inference
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
bagdevi.mishra
▴ 110
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