Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
50 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
Showing top results for tag:
list
•
reset
0
votes
1
reply
986
views
How to filter the BAM file using barcode list produced by 10x pipelines?
list
barcode
updated 17 months ago by
GenoMax
145k • written 21 months ago by
Info.shi
▴ 30
0
votes
1
reply
686
views
TypeError: 'list' object is not callable
List
dataFrame
python
updated 18 months ago by
Afnan Nuruzzaman
▴ 10 • written 18 months ago by
Jakpa
▴ 50
2
votes
6
replies
1.6k
views
Unable to convert "NULL" to either zero or NA
List
Integer
NULL
NA
updated 22 months ago by
Jeremy
▴ 920 • written 22 months ago by
Cancer
▴ 10
1
vote
4
replies
2.3k
views
Converting elements of a nested list into individual data frames in R
Nested
Dataframe
R
list
2.0 years ago by
salman_96
▴ 70
1
vote
9
replies
1.8k
views
how to convert a protein sequence into a list of characters
python
list
updated 2.4 years ago by
Jeremy
▴ 920 • written 2.4 years ago by
Debut
▴ 20
0
votes
0
replies
321
views
Easy way to calculate frequencies in Plink
plink
list
frecuencies
bash
updated 2.5 years ago by
Ram
44k • written 2.5 years ago by
alessandro
• 0
1
vote
2
replies
656
views
Filter track list and variant list
sample
list
filters
variant
updated 2.6 years ago by
brunobsouzaa
▴ 830 • written 2.6 years ago by
Cong-Phuoc
• 0
0
votes
0
replies
512
views
EQTL visualization
list
EQTL
plot
2.6 years ago by
Nai
▴ 50
0
votes
0
replies
523
views
Prioritizing/rank ordering genes from two lists: averaging values?
gene
RNA-seq
DE
list
ranking
2.3 years ago by
kelen
▴ 210
2
votes
4
replies
2.5k
views
kegg IDs to pathways in R
R
KEGG
list
pathways
2.9 years ago by
sapuizait
▴ 10
0
votes
2
replies
768
views
Iterate and extract data franes
dataframe
list
iteration
updated 23 months ago by
Ram
44k • written 3.1 years ago by
cr173921
▴ 40
0
votes
1
reply
840
views
List of codon numbers in a panel
browser
codon
list
ucsc
genome
updated 3.1 years ago by
Luis Nassar
▴ 670 • written 3.5 years ago by
ines
• 0
0
votes
1
reply
826
views
metascape
list
gene
input
metascape
updated 3.2 years ago by
Ram
44k • written 3.2 years ago by
fionajcunningham
• 0
1
vote
1
reply
655
views
Identify the potential TF involved in the regulation of DEGs
Transcription
factors
gene
list
R
updated 3.2 years ago by
Zhilong Jia
★ 2.2k • written 3.3 years ago by
ryme
▴ 30
1
vote
1
reply
531
views
How to extract genes from RNA-seq using its reference genome?
of
alignment
RNAseq
genes
list
updated 3.3 years ago by
GenoMax
145k • written 3.3 years ago by
ivan.nikolaev025
• 0
7
votes
6
replies
1.4k
views
Looping over list in R
RNA-Seq
Loop
List
R
updated 2.3 years ago by
Minh-Anh
▴ 10 • written 3.9 years ago by
rodolfo.peacewalker
▴ 390
40
votes
24
replies
35k
views
13 follow
Samtools And Region List
samtools
list
updated 2.6 years ago by
debora.gisch
• 0 • written 12.2 years ago by
win
▴ 990
0
votes
2
replies
865
views
Retrieving sequence from NCBI
ncbi
blast
list
updated 4.9 years ago by
JC
13k • written 4.9 years ago by
ashaneev07
▴ 30
7
votes
2
replies
2.9k
views
Exhaustive List Of Sequenced Genomes
list
genome
updated 5.2 years ago by
Biostar
20 • written 11.9 years ago by
Anima Mundi
★ 2.9k
2
votes
4
replies
1.3k
views
Nested data frames in a list
R
dataframe
list
updated 5.2 years ago by
Fabio Marroni
★ 3.0k • written 5.2 years ago by
friasoler
▴ 50
4
votes
2
replies
4.9k
views
How to lapply ggsurvplot to make survival plots
R
list
lapply
ggsurvplot
5.4 years ago by
kin182
▴ 10
10
votes
12
replies
2.2k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
5.6 years ago by
msimmer92
▴ 310
0
votes
5
replies
1.2k
views
A large list of chromossome
chromossome
dataframe
list
R
updated 5.6 years ago by
zx8754
12k • written 5.6 years ago by
1996luanabianca
• 0
7
votes
4
replies
3.5k
views
Resources To Batch Map Long Gene Names To Entrez Ids?
gene
mapping
list
identifiers
updated 5.7 years ago by
Biostar
20 • written 13.0 years ago by
Walter Jessen
▴ 90
0
votes
3
replies
1.6k
views
find LD of list of SNPs, located on different chromosomes
LD
SNPS
list
different chromosomes
updated 5.9 years ago by
Tm
★ 1.1k • written 5.9 years ago by
anamaria
▴ 220
0
votes
7
replies
2.1k
views
Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon
R
list
data frame
6.2 years ago by
user31888
▴ 150
1
vote
1
reply
1.1k
views
check genes from a list. print if match
python
genes
list
vcf
updated 6.6 years ago by
Pierre Lindenbaum
164k • written 6.6 years ago by
windsur
▴ 20
6
votes
7
replies
8.9k
views
Converting fasta file into list with names and sequences
python
fasta
list
dictionary
updated 6.8 years ago by
WouterDeCoster
47k • written 6.8 years ago by
anme
• 0
4
votes
2
replies
2.0k
views
Finding RNA sequences for a list of genes
rna
RNA-Seq
list
genes
7.0 years ago by
c_u
▴ 520
3
votes
14
replies
2.3k
views
6 follow
Read a text file into a list
r
list
updated 7.5 years ago by
zx8754
12k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.9k
1
vote
1
reply
1.4k
views
Retrieval of Snps data from 1000 genome browser?
snps
1000 genome browser
list
8.4 years ago by
12021560-040
▴ 70
16
votes
8
replies
31k
views
How to generate a fasta file from a python dictionary or lists?
sequence
fasta
list
dictionary
python
updated 20 months ago by
Ram
44k • written 9.4 years ago by
grayapply2009
▴ 300
14
votes
7
replies
5.7k
views
Where Can I Find A List Of Human Tfs?
transcription
list
human
updated 9.6 years ago by
Biostar
20 • written 13.3 years ago by
Kate
▴ 370
20
votes
9
replies
11k
views
8 follow
How To Search Disease Association For A List Of Genes?
gene
list
search
disease
updated 2.4 years ago by
Ram
44k • written 11.4 years ago by
k810v9
▴ 60
7
votes
13
replies
3.1k
views
How can I find the elements from a list in the keys from a dictionary?
python
list
dictionary
biopython
updated 2.7 years ago by
Ram
44k • written 10.2 years ago by
albamaria.muniesa
• 0
0
votes
0
replies
1.8k
views
Gene-Set Expression Enrichment
gene
list
expression
enrichment
10.6 years ago by
sagi.polani
▴ 100
0
votes
2
replies
2.0k
views
Functional Annotation Clustering With Multiple Backgrounds
function
clustering
gene
list
10.7 years ago by
ms3389
• 0
3
votes
9
replies
3.6k
views
Perl: Implementing A Circular List /Circular Iteration
perl
list
updated 10.9 years ago by
Michael
55k • written 10.9 years ago by
Neal
▴ 60
2
votes
3
replies
1.8k
views
Use Query List To Extra Sequeces
data
list
updated 11.4 years ago by
k.nirmalraman
★ 1.1k • written 11.4 years ago by
redspider19800915
▴ 40
2
votes
4
replies
2.7k
views
Ortholog Genes In S.Cerevisiae And Y. Lipolytica
list
updated 11.4 years ago by
Josh Herr
5.8k • written 11.4 years ago by
martin.kavscek
▴ 20
42
votes
21
replies
43k
views
11 follow
Comparing 2 Large Lists (Millions Of Rows) To Identify Shared And Exclusive Elements
unix
list
intersect
updated 2.9 years ago by
Ram
44k • written 11.7 years ago by
Bioinfosm
▴ 620
2
votes
2
replies
3.2k
views
Extract Specific Entries From Blastx Output File, Write To New File
python
biopython
blast
list
12.1 years ago by
charles.bridges
▴ 70
12
votes
4
replies
12k
views
Add Sequences To A List From A Complex Fasta File In Python
sequence
fasta
python
list
12.6 years ago by
hicsuntdrac0nis
▴ 250
6
votes
2
replies
6.0k
views
Creating List Of Vectors, From Txt File With Unequal Fields Per Line
r
list
read
updated 12.7 years ago by
Sean Davis
27k • written 12.7 years ago by
boczniak767
▴ 870
1
vote
3
replies
3.8k
views
Parse Ncbixml Output Into A Python List Of Hits
biopython
list
updated 12.8 years ago by
Damian Kao
16k • written 12.8 years ago by
Zach Powers
▴ 340
8
votes
4
replies
6.8k
views
Find (Start:End) Positions That Sublists Occur Within A List . Python
python
list
updated 12.8 years ago by
Damian Kao
16k • written 12.8 years ago by
hicsuntdrac0nis
▴ 250
0
votes
1
reply
1.9k
views
Intersection Of Processed Microarray Data: P-Values Commensurability
microarray
list
p-value
intersect
13.0 years ago by
Anima Mundi
★ 2.9k
22
votes
7
replies
4.2k
views
Is The Nar Database List Available In A Computer Readable Format?
database
list
updated 13.5 years ago by
Pierre Lindenbaum
164k • written 13.5 years ago by
Andra Waagmeester
3.2k
12
votes
6
replies
2.9k
views
Obtaining Random Sequences From Genbank
random
sequence
genbank
refseq
list
13.6 years ago by
Anima Mundi
★ 2.9k
10
votes
4
replies
2.6k
views
List Of Universities/Commercial Organizations That Have Utilized Ngs Sequencing Technologies For Research
next-gen
sequencing
list
illumina
updated 13.7 years ago by
Mrw34
▴ 70 • written 13.8 years ago by
Monzoor
▴ 300
50 results • Page
1 of 1
Recent Votes
C: Single rare variant approaches
C: Single rare variant approaches
Answer: Importing data from GEO
Importing data from GEO
A: 0 Features for COVID-19 ExpressionSet through GEOQuery
0 Features for COVID-19 ExpressionSet through GEOQuery
Comment: trying to use the API for edirect tool (NCBI)
Recent Locations •
All
United States,
just now
UCLA,
1 minute ago
Brazil,
1 minute ago
Finland,
1 minute ago
United States,
3 minutes ago
Istanbul, Turkey,
6 minutes ago
Jordan,
9 minutes ago
Recent Awards •
All
Popular Question
to
mykle hoban
▴ 40
Popular Question
to
avelarbio46
▴ 30
Popular Question
to
gcooper1245
▴ 10
Popular Question
to
ipediez93
▴ 40
Popular Question
to
David Langenberger
11k
Popular Question
to
mrashad
▴ 80
Teacher
to
Pierre Lindenbaum
164k
Recent Replies
Comment: Using GEOquery
by
ATpoint
84k
Have you even read my answer? I gave a full explanation on what the problem is and what the solutions can be. What is unclear?
Comment: Using GEOquery
by
Rohulla
• 0
I also come up with this problem. No body still answer this question.
Answer: Performing Needleman-Wunsch Global Alignment for multiple mutant proteins agains
by
Istvan Albert
101k
You can use the `bio` with the `align` tool. Install with `pip install bio` then bio align query.fa target.fa You can put all the tar…
Answer: Long-read sequencing data simulation using CAMISIM
by
Istvan Albert
101k
Since they explicitly have a pbsim config file, the comment you found is probably just a leftover from another config file that was copied …
Comment: RNA-Seq mutation calling without germline data
by
marionette.kent
• 0
Thanks @shred for sharing your pipeline. Can I ask if it runs each sample individually? Our HPC has limited space for each user so I have b…
Comment: Pedigree information
by
bk11
★ 3.0k
Since you have plink (bed/bim/fam) files, sex information is stored in the 5th column of the `.fam` file. If that information is missing an…
Comment: The Evolution of NGS: What’s New and What’s Next?
by
i.sudbery
20k
I know its a technical possiblity. But people I know that do this say its still very much an experimental technique. You need to learn the …
Answer: Merging bfiles
by
bk11
★ 3.0k
If you have common set of SNPs between your two set of bfiles `(PLINK files)`, you can use `plink --bmerge` command to merge them as follow…
Comment: The Evolution of NGS: What’s New and What’s Next?
by
Istvan Albert
101k
`rust` was not designed to be a competitor to `python`, it was designed as a competitor to `C` and `C++` - `rust` integrates really well…
Comment: Can someone install me (remotely) Amber24?
by
Ram
44k
Do you mean you have a Windows machine that has Windows Subsystem for Linux and you're unable to install a piece of software over a remote …
Comment: Choosing the Best Method for DEG Analysis: limma vs. DESeq2 for RSEM Normalized
by
Istvan Albert
101k
Fundamentally these types of filterings come down to the effect they have on the data. Does your filtering change the data, does it chang…
Comment: Generally how are non-canonical chromosomes treated in human variation studies
by
GenoMax
145k
This blog post may partly help: https://lh3.github.io/2017/11/13/which-human-reference-genome-to-use
Comment: Why does assigning genes with biomart give me different values than using a tran
by
bioinfo
▴ 150
Do you think that I should be including the information from the scaffold patch for the quantification? Initially I used the transcript_to_…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
GenoMax
145k
It has been moved to a comment (looks like you are a moderator that seems to have come back after a long break). You can accept @dgtool ans…
Answer: Mendelian precison
by
Pierre Lindenbaum
164k
For trios and short-reads, I use delly or manta to get a join VCF of the trio (+ a few controls to discard false positives). I then kee…
Traffic: 1582 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6