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Showing top results for tag: gtf • reset
0
votes
1
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222
views
HISAT2 human index and GTF file version incompatibility
index HISAT2 GTF
updated 5 days ago by ▴ 90 • written 6 days ago by ▴ 40
0
votes
3
replies
293
views
GTF merging with gffcompare
gtf merging annotation RNA-Long reads transcript
updated 10 days ago by 8.9k • written 13 days ago by • 0
4
votes
4
replies
303
views
gtf files for various organism in ucsc
gtf
16 days ago by 1769mkc ★ 1.2k
7
votes
24
replies
1.9k
views
GTF file
cellranger-arc GTF cellranger-arc-2.0.2
21 days ago by IrK ▴ 100
24
votes
11
replies
894
views
7 follow
Tool: A simple and lightweight tool for filtering csv file wirtten in Rust
gtf tab gff vcf csv
updated 4 weeks ago by 4.9k • written 5 weeks ago by ▴ 100
3
votes
2
replies
486
views
I need to index a GTF (gene transfer format) annotation file
GATK Funcotator GTF HLA-typing
updated 6 weeks ago by 44k • written 6 weeks ago by • 0
4
votes
5
replies
624
views
Extracting human exome from GTF file
gtf human exons
updated 9 weeks ago by 101k • written 9 weeks ago by • 0
2
votes
3
replies
326
views
How to generate GFF3 or GTF files for a custom reference.
GFF3 GTF
updated 11 weeks ago by 44k • written 11 weeks ago by • 0
3
votes
2
replies
304
views
Finding gtf file for safflower
gtf safflower
11 weeks ago by analyst ▴ 50
1
vote
6
replies
484
views
Is there any EnsEMBL 90 transcript annotations?
GTF cgat RNA-Seq
3 months ago by PK ▴ 130
1
vote
2
replies
346
views
Ecocyc/Biocyc bulk download
gtf bed gff annotation
3 months ago by noodle ▴ 590
1
vote
3
replies
402
views
Where to find full operon annotations of E coli
gtf Annotation gff bed
updated 3 months ago by ▴ 630 • written 3 months ago by ▴ 590
1
vote
2
replies
428
views
snpEff database build: FATAL ERROR: No CDS checked
gtf snpEff CDS
3 months ago by rwherman13 • 0
0
votes
1
reply
309
views
Converting gtf file from Ensembl to the UCSC Ensembl format (ensGene.txt format)
gtf Ensembl UCSC annotation
updated 4 months ago by ▴ 30 • written 4 months ago by • 0
0
votes
1
reply
411
views
cellranger error fix GTF
gtf cellranger scRNA-seq
updated 4 months ago by 44k • written 4 months ago by ▴ 150
1
vote
2
replies
392
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana gtf reference-genome
updated 6 months ago by 44k • written 6 months ago by • 0
4
votes
2
replies
2.4k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF SAM BAM GFF minimap2
updated 6 months ago by ▴ 130 • written 18 months ago by • 0
1
vote
1
reply
698
views
adding gene and CDS feature types in ensemble gtf annotation with transcript and exon features
GTF GFF transcript CDS exon
updated 6 months ago by ★ 1.1k • written 6 months ago by ▴ 20
0
votes
0
replies
258
views
How to annotate a bed file using gtf using python
bed- Coding gtf file
7 months ago by naveedhasan2000 ▴ 10
4
votes
2
replies
5.3k
views
Genome annotation: convert gtf to gff3 file
gff3 gtf
updated 7 months ago by • 0 • written 23 months ago by ▴ 50
2
votes
3
replies
603
views
Annotate genes from gtf file to vcf file
gtf genomics vcf
7 months ago by QX ▴ 60
4
votes
1
reply
480
views
why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
7 months ago by mathavanbioinfo ▴ 80
0
votes
0
replies
296
views
Gene Prediction Breaker3
prediction protein-seq GTF Breaker3 gene
7 months ago by mathavanbioinfo ▴ 80
0
votes
0
replies
257
views
featureCounts micounts reads?
RNA-seq GTF introns featureCounts
7 months ago by tessa2525 • 0
2
votes
2
replies
430
views
Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq GTF cgat
8 months ago by PK ▴ 130
0
votes
2
replies
613
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 6 months ago by • 0 • written 8 months ago by ▴ 150
0
votes
0
replies
241
views
How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR
gtf swDMR bed
8 months ago by jfelix • 0
1
vote
0
replies
487
views
Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert gff gtf bed
8 months ago by alejandrogzi ▴ 140
0
votes
1
reply
350
views
How do I summarise the structure of the oligo library I made
nanopore-sequencing ssDNA alignment gtf
8 months ago by Mar • 0
0
votes
3
replies
667
views
Its possible to merge GTF files from different genome versions so I can assing the seqnames from one ot another
Genome GTF
updated 9 months ago by 44k • written 9 months ago by • 0
0
votes
3
replies
807
views
deeptools computeMatrix gtf file : if name not in self.exons[self.labelIdx]: IndexError: IndexError: list index out of range
metagene gtf computeMatrix deeptools
updated 10 months ago by ★ 1.8k • written 10 months ago by • 0
2
votes
5
replies
1.2k
views
Help - how to merge human reference genome and GTF file with a custom sequence.
reference-genome genome gtf
updated 10 months ago by 101k • written 10 months ago by • 0
2
votes
4
replies
926
views
An issue with gtf file (ballgownrsem)
Ballgown RNA-seq GTF RSEM
11 months ago by cucindarko51 • 0
0
votes
1
reply
543
views
Annotation GTF/GFF Arabidopsis thaliana
Arabidopsis GFF GTF Annotation
11 months ago by sansan96 ▴ 130
5
votes
2
replies
1.1k
views
Fastest way to convert BED to GTF/GFF with gene_ids?
gff convert bed gtf
updated 11 months ago by ★ 3.9k • written 11 months ago by ▴ 140
1
vote
4
replies
662
views
GTF file for Rhinolophus sinicus
Rhinolophus-sinicus GTF
updated 6 months ago by ▴ 10 • written 11 months ago by • 0
1
vote
3
replies
618
views
Should unique gene names/transcript IDs be used for ribosomal gene copies in a GTF/GFF file?
GTF GFF
updated 11 months ago by ★ 2.5k • written 11 months ago by ▴ 950
2
votes
6
replies
1.1k
views
Filter a BED file based on genome coordinates for gene names
BED GTF GFF
updated 11 months ago by 44k • written 11 months ago by • 0
1
vote
4
replies
998
views
RNAseq how to map Mouse+Virus Genome with STAR
STAR GTF RNA-seq fasta
updated 11 months ago by 146k • written 11 months ago by ▴ 230
1
vote
10
replies
1.4k
views
file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
12 months ago by rj.rezwan ▴ 10
0
votes
4
replies
1.1k
views
Converting GFF to GTF
gff gtf
updated 12 months ago by 44k • written 12 months ago by • 0
1
vote
1
reply
436
views
Luciferase T7 Control GTF file
Luciferase GTF
updated 13 months ago by 8.8k • written 13 months ago by • 0
1
vote
9
replies
1.7k
views
6 follow
Getting the overlap between two GTF files
RNA-seq GTF
updated 13 months ago by 44k • written 13 months ago by • 0
1
vote
1
reply
715
views
gffread outputs empty gtf file
gff gffread gtf
updated 13 months ago by ▴ 70 • written 13 months ago by • 0
2
votes
5
replies
1.0k
views
GTF annotation file for Hg38 Dec 2013 (First Release)
hg38 file gtf
updated 13 months ago by 146k • written 13 months ago by ▴ 30
9
votes
6
replies
2.3k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 13 months ago by 85k • written 23 months ago by ▴ 30
3
votes
5
replies
1.5k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 13 months ago by ▴ 140 • written 23 months ago by ▴ 30
1
vote
2
replies
936
views
convert bed12 to sorted gtf
bed12 gtf gff awk
updated 13 months ago by ▴ 140 • written 2.3 years ago by • 0
0
votes
1
reply
414
views
cell ranger custom gtf file
gtf 10x single-cell
updated 14 months ago by 44k • written 14 months ago by • 0
2
votes
4
replies
958
views
How to convert dnsnp in UCSC to gtf
UCSC dnsnp gtf
14 months ago by octpus616 ▴ 110
50 results • Page 1 of 1
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filterx : fast and efficient filter tool written in Rust for csv,fasta,fastq,gff,vcf,sam files.
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