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50 results • Page
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Showing top results for tag:
gsea
•
reset
0
votes
2
replies
234
views
Comparing GSEA mutant data to wild type
python
gene
GSEA
R
6 hours ago by
conmul
• 0
0
votes
2
replies
224
views
Appropriate minimum gene set size for gene set enrichment analysis
HTSanalyzer
gsea
FGSEA
15 days ago by
Bine
▴ 70
2
votes
2
replies
360
views
Can anyone share with me the R code for GSEA analysis?
R
code
GSEA
updated 21 days ago by
GenoMax
146k • written 21 days ago by
nuorain
▴ 30
1
vote
2
replies
439
views
GSEA single cell
gsea
scRNA-seq
updated 8 weeks ago by
Ming Tommy Tang
★ 4.4k • written 8 weeks ago by
SHP
▴ 10
0
votes
0
replies
186
views
How to use compareCluster ?
gsea
RNA-seq
clusterprofiler
deseq2
updated 8 weeks ago by
Ram
44k • written 8 weeks ago by
b8177
▴ 10
0
votes
0
replies
183
views
How to choose the minGSsize and maxGSsize parameters in clusterProfilers GSEA
R
clusterProfiler
GSEA
12 weeks ago by
edoardofilippi1998
• 0
0
votes
1
reply
311
views
Unable to Upload a .txt file into GSEA
txt
dataset
Gsea
expression
updated 12 weeks ago by
GenoMax
146k • written 3 months ago by
BUB1
• 0
0
votes
0
replies
217
views
Workflow for functional analysis of differential gene core modules: KEGG, GSEA, and GO enrichment
gsea
ppi-network
enrichment-analysis
kegg
3 months ago by
mizzika
• 0
0
votes
1
reply
311
views
p values, q values, stat.mean for gage() outputs - What to report and why?
gage
pathway-analysis
GSEA
R
updated 3 months ago by
BioinfGuru
★ 2.1k • written 3 months ago by
jpvoth
• 0
0
votes
1
reply
350
views
Normalized enrichment Score (NES) cut-off
NES
GSEA
analysis
threshold
GO
updated 3 months ago by
GenoMax
146k • written 3 months ago by
shakyaram079
• 0
1
vote
2
replies
357
views
how to perform the GSEA for multi groups
GSEA
3 months ago by
alwayshope
▴ 40
0
votes
0
replies
226
views
How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
metabolomics
gsea
pathways
gmt
3 months ago by
DareDevil
★ 4.3k
1
vote
1
reply
307
views
Ranking the GSEA Results
log2FC
p-value
DESeq2
GSEA
updated 4 months ago by
dthorbur
★ 2.5k • written 4 months ago by
V_Vibes
▴ 10
2
votes
11
replies
1.2k
views
Errors with GSEA using clusterProfiler
clusterProfiler
GSEA
4 months ago by
bio_info
▴ 20
6
votes
3
replies
656
views
GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
RNA-seq
DESeq2
GSEA
4 months ago by
Fossil
▴ 20
0
votes
4
replies
522
views
Test custom signature using GSEA in scRNA-seq
scRNA-seq
Seurat
GSEA
4 months ago by
bio_info
▴ 20
1
vote
9
replies
3.5k
views
6 follow
collapsePathways function throwing error
GSEA
fgsea
R
updated 3 days ago by
txema.heredia
▴ 190 • written 19 months ago by
Pac314
▴ 10
0
votes
1
reply
380
views
How to compute gsea overlap of gene set with R
gsea
overlap
updated 5 months ago by
Nat.Nataren
▴ 100 • written 5 months ago by
Picasa
▴ 650
3
votes
1
reply
460
views
visualize GSEA
barplot
RNA-seq
GSEA
enrichment
updated 6 months ago by
Ram
44k • written 6 months ago by
Rob
▴ 170
0
votes
0
replies
459
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot
graphical_output
GSEA
clusterProfiler
6 months ago by
NorbertK
▴ 10
0
votes
2
replies
503
views
GSEA analysis in R
GSEA
R
Arabidopsis
6 months ago by
Sudip
• 0
3
votes
1
reply
432
views
Trouble understanding seemingly contradicting results of GSE analysis (contradicting enriched GO terms with similar negative NES scores)
GSEA
pathways
GO-terms
updated 6 months ago by
i.sudbery
20k • written 6 months ago by
Manko47
▴ 10
91
votes
24
replies
26k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 6 months ago by
Gordon
• 0 • written 4.0 years ago by
Hamid Ghaedi
3.3k
2
votes
2
replies
703
views
GSEA on non-model organisms: How to handle duplicated KEGG KO
KEGG
GSEA
clusterProfiler
GhostKOALA
updated 6 months ago by
alserg
▴ 980 • written 6 months ago by
mksaad28
• 0
0
votes
2
replies
509
views
trying to do some GSEA in python
python
GSEA
GO
updated 7 months ago by
Wayne
★ 2.1k • written 7 months ago by
aleksk779
• 0
1
vote
0
replies
251
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 7 months ago by
Ram
44k • written 7 months ago by
Tolga
▴ 30
0
votes
0
replies
176
views
GSEA number dimension of expression dataset
GSEA
7 months ago by
edoardofilippi1998
• 0
0
votes
0
replies
339
views
Only positive enrichment score in GSEA
enrichmentanalysis
clusterprofiler
gsea
bioconductor
rnaseq
7 months ago by
enee
▴ 20
0
votes
0
replies
305
views
Trouble running GSEA analysis on log2 fold change values of RNA-seq data
rnaseq
gsea
rnk
8 months ago by
trkfs
• 0
2
votes
2
replies
573
views
Choosing right GSEA background gene sets
GSEA
enrichment
analysis
updated 8 months ago by
jv
★ 1.8k • written 8 months ago by
yxwucq
• 0
0
votes
0
replies
262
views
RNA-seq GSEA cutoff
GSEA
8 months ago by
maplewj
▴ 20
0
votes
1
reply
557
views
GSEA to compare multiple experimental groups
gsea
rna-seq
updated 8 months ago by
Ram
44k • written 8 months ago by
Steven
• 0
2
votes
2
replies
663
views
Significance of P value in GSEA
gsea
p-value
updated 8 months ago by
jv
★ 1.8k • written 8 months ago by
Pumla
• 0
0
votes
1
reply
459
views
"N/A" in fgsea result
gsea
fgsea
updated 8 months ago by
Dave Carlson
★ 1.9k • written 8 months ago by
puffpumpkin
• 0
0
votes
0
replies
274
views
GSEA or PEA with pearson correlations instead of log2foldchanges
GSEA
Enrichment-analysis
PEA
Cellrank
updated 8 months ago by
Ram
44k • written 8 months ago by
Tolga
▴ 30
1
vote
1
reply
417
views
DESeq2 and Gene Set Enrichment Analysis
DESeq
GSEA
updated 9 months ago by
ATpoint
85k • written 9 months ago by
noerm123
• 0
8
votes
8
replies
11k
views
6 follow
GSEA preranking metric for RNA Seq
RNA-Seq
gsea
deseq2
updated 4 months ago by
V_Vibes
▴ 10 • written 6.7 years ago by
bipin
▴ 30
4
votes
7
replies
1.1k
views
Help in choosing the right metric for ranking genes in fgsea
FGSEA
GSEA
9 months ago by
Ngrin
• 0
0
votes
3
replies
1.1k
views
How to interpreting that ORA and GSEA results?
pathway
gsea
ora
updated 9 months ago by
Istvan Albert
101k • written 9 months ago by
ubuntubak
• 0
0
votes
0
replies
262
views
GSEA for ChIP/ATAC-seq
ATAC-seq
GSEA
9 months ago by
Orange
▴ 30
5
votes
3
replies
2.6k
views
Gene Enrichment analysis with EggNog output
gsea
eggnog
gene-ontology
RNA-seq
updated 10 months ago by
Ram
44k • written 20 months ago by
JirMan
▴ 40
3
votes
6
replies
1.1k
views
No genes mapped in clusterprofiler gseGO
R
clusterProfiler
gseGO
GSEA
10 months ago by
jon50250
• 0
1
vote
8
replies
4.3k
views
No gene can be mapped
R
GSEA
updated 10 months ago by
jv
★ 1.8k • written 2.8 years ago by
yang.zhizhang
▴ 10
1
vote
2
replies
659
views
Extracting GSEA gene rankings from gseaResult object
R
clusterProfiler
GSEA
10 months ago by
mflab
• 0
2
votes
2
replies
1.4k
views
fgsea leading edge genes
gsea
updated 10 months ago by
Ram
44k • written 3.2 years ago by
charlielonergan
▴ 20
1
vote
2
replies
578
views
recommend gene ranking methods when doing GSEA
Gene_rank
GSEA
updated 10 months ago by
rpolicastro
13k • written 10 months ago by
luckyday1661
▴ 10
0
votes
0
replies
370
views
News:
Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R
Gene-Set-Enrichment-Analysis
GSEA
Bioconductor
updated 10 months ago by
Ram
44k • written 10 months ago by
carlopecoraro2
★ 2.6k
0
votes
2
replies
594
views
how to run GSEA with spesific background
RNA-seq
GSEA
updated 9 months ago by
max.fischer03
• 0 • written 10 months ago by
Chava
• 0
2
votes
4
replies
810
views
How should I run ssgsea analysis ?
functional
TPM
enrichment
gsea
ssgsea
updated 10 months ago by
Ram
44k • written 11 months ago by
DareDevil
★ 4.3k
4
votes
2
replies
1.2k
views
GSEApy plot TypeError
gsea
python
DEG
updated 11 months ago by
Ram
44k • written 12 months ago by
Emily
▴ 70
50 results • Page
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