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Showing top results for tag: function • reset
0
votes
0
replies
360
views
KEGG module and abundance of its KEGG Orthologs for functioning
function kegg abundance
15 months ago by Jonathan Yoou ▴ 60
4
votes
6
replies
6.9k
views
Interpro Enrichment - Any Organism
enrichment function
updated 19 months ago by 44k • written 13.1 years ago by ▴ 870
7
votes
13
replies
2.4k
views
Problems with the input (from TPM) to run the WGCNA
gsub WGCNA function
updated 22 months ago by 102k • written 22 months ago by • 0
2
votes
2
replies
1.3k
views
How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
metagenomics function annotation reads contigs
22 months ago by JyiYeung • 0
0
votes
0
replies
474
views
Functional differences in bacterial genomes within a genus
genome bacteria pathway function
22 months ago by lstn • 0
0
votes
0
replies
571
views
homology and protein function inference
homology evolution function
2.6 years ago by timothy.kirkwood ▴ 140
6
votes
3
replies
1.2k
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq annotation workflow function
updated 2.6 years ago by ▴ 60 • written 2.6 years ago by ▴ 10
3
votes
4
replies
1.1k
views
Divide the dataframe based on conditions in R
R dividing data-frame function
2.6 years ago by KABILAN ▴ 130
0
votes
3
replies
743
views
How to search and identify the function of DEGs
function functional annoatation DEGs
updated 2.7 years ago by ▴ 810 • written 2.7 years ago by • 0
2
votes
2
replies
810
views
pfam functional redundancy
redundancy protein pfam domain function
2.7 years ago by timothy.kirkwood ▴ 140
0
votes
1
reply
562
views
Limitations with whole genome co-expression network analysis
Co-expression WGCNA function
updated 2.9 years ago by ▴ 30 • written 2.9 years ago by ▴ 10
0
votes
0
replies
399
views
dbSNP Filtering by function class
function plink filter dbSNP
3.0 years ago by BiostarNewbie • 0
5
votes
5
replies
3.2k
views
How can I merge GFF files together to produce a file with gene functions from both?
merge protein gff function
updated 3.0 years ago by ▴ 30 • written 3.0 years ago by ▴ 20
0
votes
2
replies
694
views
Single nucleotide variant
SNV of loss function
3.0 years ago by heureuse • 0
0
votes
1
reply
917
views
How to identify different protein domains using HHpred
HHpred structure protein uniprot function
updated 3.1 years ago by ★ 4.0k • written 3.1 years ago by • 0
0
votes
1
reply
781
views
gene function
function biomart annotation clustering functional gene
updated 3.1 years ago by 11k • written 3.2 years ago by ▴ 50
0
votes
0
replies
461
views
functional annotation and clustering
function biomart annotation clustering functional gene
3.2 years ago by biology_inform ▴ 50
2
votes
6
replies
1.9k
views
How to iterate over all elements of a dataframe and make changes based on a function
function R datafram
3.2 years ago by maria2019 ▴ 250
0
votes
0
replies
530
views
what regression model does step() in R use
lm function R model stepwise
3.3 years ago by RNAseqer ▴ 280
2
votes
7
replies
1.8k
views
Gene ontology from annotation
function non-model animal GO gene
3.3 years ago by jaqx008 ▴ 110
0
votes
2
replies
970
views
Creating column that groups data from another columns
R statistics function data
3.4 years ago by Bioinfo ▴ 20
7
votes
13
replies
2.4k
views
6 follow
Data Manipulation
Excel Analysis R Function Data
3.4 years ago by science03 ▴ 50
0
votes
0
replies
457
views
how to perform independent test by R ranger() function
function ranger R
3.5 years ago by dao • 0
7
votes
5
replies
1.4k
views
Orthology, sequence similarity, and conservation of function
homology function similarity prediction sequence orthology
3.5 years ago by Dunois ★ 2.9k
3
votes
11
replies
2.2k
views
How to associate a gene to one general function?
gene function
3.7 years ago by Francois Piumi ▴ 70
0
votes
0
replies
599
views
Error in cut edge program in MATLAB
function programming
3.9 years ago by Abhinav • 0
4
votes
11
replies
1.9k
views
How to write it in R language?
R function programming coding
updated 4.0 years ago by ▴ 150 • written 4.0 years ago by ▴ 80
4
votes
3
replies
975
views
multi species_gene name to description
gene function transcriptome
updated 4.5 years ago by 149k • written 4.5 years ago by ▴ 20
1
vote
3
replies
2.8k
views
How to feed the sequence dictionary created with multifasta file into python function
python multi-fasta function
updated 4.8 years ago by ▴ 650 • written 4.8 years ago by ▴ 100
0
votes
3
replies
1.7k
views
Code for multiclass differential gene expression analysis
deg ttest function
5.0 years ago by orzech_mag ▴ 230
2
votes
3
replies
1.5k
views
Functional Metagenomic Analysis Tools
metagenomics protein microbiome function
updated 5.1 years ago by ▴ 330 • written 5.9 years ago by ▴ 70
0
votes
1
reply
1.9k
views
Functional categorization of genes
gene function
updated 6.1 years ago by ▴ 10 • written 7.1 years ago by ▴ 750
0
votes
2
replies
1.1k
views
Identifying Certain Genes in a Bacterial Genome
genome gene function
updated 6.2 years ago by 35k • written 6.2 years ago by • 0
3
votes
5
replies
2.3k
views
Have several promoter sequences and wanna find out function of conserved motifs...
meme motif function
updated 6.3 years ago by ★ 18k • written 6.3 years ago by • 0
28
votes
4
replies
14k
views
Tools Of Choice For Functional Annotation Of Genes And Proteins
annotation function
updated 2.9 years ago by 44k • written 13.5 years ago by ▴ 290
0
votes
1
reply
1.0k
views
Function that determine if value is empty and return NA if not return the value?
php function NA
6.8 years ago by nemo ▴ 40
1
vote
2
replies
1.3k
views
compare to list of genes about its function in growth and other pathway with visualization
gene function grwoth visualization comparision
updated 7.0 years ago by ▴ 60 • written 7.0 years ago by ▴ 50
0
votes
3
replies
1.5k
views
Gene type identification
database function gene
7.2 years ago by popayekid55 ▴ 110
0
votes
2
replies
1.4k
views
calling objects from an embedded function
function nested-function object
7.3 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
5
replies
1.8k
views
Determine gene function for soyBean transcript
function transcript RNA-Seq
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 70
3
votes
5
replies
3.1k
views
How to test activation/inactivation of pathways?
pathway function
updated 7.9 years ago by ▴ 180 • written 7.9 years ago by ★ 1.2k
5
votes
8
replies
4.0k
views
Looking For An Easy To Use Tool To Analyse A Gene Set For Enrichment Of Immunological Function
function analysis kegg
8.0 years ago by confusedious ▴ 490
3
votes
8
replies
2.6k
views
Prediction of peptide function, How to do?
prediction peptide function software
updated 8.0 years ago by ★ 2.8k • written 8.0 years ago by ★ 1.3k
3
votes
2
replies
1.9k
views
How to facilitate the performance of overlap for GRanges objects (verifiable example is given)?
r GRanges overlap performance function
8.6 years ago by Jurat Shahidin ▴ 100
4
votes
3
replies
2.0k
views
getting gene functions for a group of genes
function cancer
8.7 years ago by zizigolu ★ 4.3k
1
vote
1
reply
2.0k
views
Analysis of list "interesting" proteins from protein array
proteinArray protein function
updated 8.8 years ago by 27k • written 8.8 years ago by ▴ 290
3
votes
7
replies
4.6k
views
Finding Information About Hypothetical Genes
gene function genome sequence
updated 8.9 years ago by 20 • written 12.7 years ago by ▴ 850
0
votes
2
replies
1.7k
views
How to find out change in function of a gene?
gene evolution function
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 20
3
votes
2
replies
2.8k
views
State Of The Art Of Prediction Of Protein Functionality After Ligand Binding
prediction protein function
updated 9.5 years ago by 20 • written 12.4 years ago by ★ 1.6k
0
votes
2
replies
3.7k
views
Difference between KEGG BlastKOALA and Annotate Sequence
kegg function pathway blast annotate
updated 10.2 years ago by 20 • written 10.2 years ago by ▴ 130
50 results • Page 1 of 1
Recent Votes
Comment: Differential Expression and absolute expression
Is there a tool or method for phasing a VCF based on an already phased BAM?
A: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
Answer: Differential Expression and absolute expression
Comment: circos ignoring the ticks and plots
Answer: Split genotypes in VCF file
C: Plotting numbers of features in EBImage in R
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Recent Replies
Comment: Unusual File Count in 10x scMultiome Data for Cell Ranger ARC Processing by Wu-Sheng Zhang • 0
Hi @genomax , thank you very much for your help! I go through that page but still a little confused. 10x scMultiomics data would store scAT…
Comment: multiBamSummary by JC 13k
check https://broadinstitute.github.io/picard/explain-flags.html to choose a proper flag
Answer: multiBamSummary by JC 13k
Yes, `--samFlagExclude 16` will exclude reads in the reverse strand, you need `--samFlagInclude 16` (primary hits, reverse strand) or some …
Answer: Mapping ~100-300bp Sequences to Metagenome-Assembled Genomes by Mensur Dlakic ★ 29k
While I use Bowtie2, there is not a strong argument for it versus other genome aligners. I guess it is because I found a pipeline back in t…
Comment: How to convert CIGAR string to VCF? by cmdcolin ★ 4.1k
i think this is a good exercise (I wrote a quick code that I have used for cigar parsing in javascript https://cmdcolin.github.io/posts/202…
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig 23k
seqr now fully supports Hail but apparently there are some issues that will force yet another switch https://github.com/broadinstitute/seqr…
Answer: How to convert CIGAR string to VCF? by Pierre Lindenbaum 165k
pseudo code: refpos1 = <something-clipped-start> readpos0= 0; for(CigarElement ce: cigar) { char co = ce.getOpera…
Comment: Split genotypes in VCF file by Biomonika (Noolean) 3.2k
vt decompose did the trick for me, followed by the filtering for 10th and 11th column. Thanks!
Comment: Extract FUngal mRNA from RNAseq Data by GenoMax 149k
Looks good to me.
Comment: CLI Downloading from Human Microbiome Project Given Login + contact failure by Arup Ghosh 3.3k
Try the [HMP client][1] to download files from their [new portal][2]. [1]: https://github.com/IGS/portal_client [2]: https://portal.h…
Comment: Extract FUngal mRNA from RNAseq Data by SomeOne ▴ 170
i used the following command. Kindly let me know if i missed something or if it is now correct ``` bbsplit.sh ref=human_GRCh38.p14_genomic…
Comment: Gini Coefficient and Lorenz curve to measure uniformity of coverage by abascalfederico ★ 1.2k
Thank you! I finally used some code from my supervisor for the Lorenz curves, it's relatively easy, and DescTools::Gini to compute the gini…
Comment: Why do people say it doesn't matter whether you run unassembled or assembled rea by dthorbur ★ 2.8k
I'm not all that familiar with your field of research, but it would seem counterproductive to try and assemble reads of a microbial communi…
Comment: Extract FUngal mRNA from RNAseq Data by GenoMax 149k
It is worth trying. You will know reads that map to the fungal reference (even though fragmented) definitely belong there. You could also…
Comment: Extract FUngal mRNA from RNAseq Data by SomeOne ▴ 170
unfortunatly there is no chromosoem level reference genome available. But there are some genome assemblies available at scaffold or contig …
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