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50 results • Page
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Showing top results for tag:
fpkm
•
reset
1
vote
2
replies
298
views
which data type I can use to bulid machine learning.
Machine-learning
FPKM
log2foldchange
10 weeks ago by
Qiang
▴ 10
1
vote
2
replies
699
views
Zero FPKM values after stringtie quantification
hisat2
stringtie
arabidopsis
rna-seq
fpkm
updated 12 weeks ago by
i.sudbery
20k • written 2.6 years ago by
Pedro
▴ 20
2
votes
3
replies
421
views
Strange peaks in normalized FPKM data
gene-expression
FPKM
3 months ago by
Cathy
• 0
0
votes
5
replies
663
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
updated 5 months ago by
Istvan Albert
101k • written 5 months ago by
sehriban.buyukkilic
▴ 10
0
votes
2
replies
428
views
Fpkm and log2fold change and pcr validation
fpkm
6 months ago by
mounavisirekolam
• 0
0
votes
6
replies
661
views
Doubt about fpkm file
FPKM
RNA-seq
updated 8 months ago by
ATpoint
84k • written 8 months ago by
mounavisirekolam
• 0
90
votes
48
replies
35k
views
29 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 11 months ago by
Ram
44k • written 11.0 years ago by
Irsan
★ 7.8k
1
vote
3
replies
992
views
FPKM values for DE analysis - Why?
fpkm
rna-seq
updated 11 months ago by
Ming Tommy Tang
★ 4.3k • written 11 months ago by
Thalita
• 0
0
votes
0
replies
337
views
Combining ComBatseq to remove batch effects and fragment size normalization
ComBatseq
FPKM
11 months ago by
Hamza
▴ 10
2
votes
4
replies
841
views
Normal vs Tumor - Kaplan Meier Survival Analysis
fpkm
Survival-Analysis
rpkm
updated 11 months ago by
Ram
44k • written 11 months ago by
Gnana
• 0
1
vote
6
replies
1.0k
views
cBioPortal data with negative log2(FPKM + 1) values
FPKM
cBioPortal
14 months ago by
LauferVA
4.4k
0
votes
0
replies
359
views
Regarding LncRNA gene expression
RNA-SEQ
LncRNA
STRINGTIE
FPKM
updated 15 months ago by
Ram
44k • written 15 months ago by
bioinfo223
▴ 10
8
votes
5
replies
1.5k
views
Genes' fpkm values through cufflink
Cufflink
RNA-seq
fpkm
16 months ago by
arsala521
▴ 50
3
votes
1
reply
761
views
How to Merge RNA Replicates
EdgeR
FPKM
RNA
counts
updated 18 months ago by
Gordon Smyth
★ 7.4k • written 18 months ago by
cthangav
▴ 110
12
votes
3
replies
1.1k
views
Can FPKM data sets be of any use or are they trash?
FPKM
RNA-seq
updated 19 months ago by
i.sudbery
20k • written 19 months ago by
schulpen_91
▴ 30
5
votes
7
replies
1.4k
views
FPKM file differentilly gene anaylsis
rnaseq
fpkm
updated 21 months ago by
dsull
★ 6.8k • written 22 months ago by
Taha
• 0
0
votes
2
replies
1.5k
views
How to get fpkm of TCGA data
FPKM
RNA-seq
TCGAbiolinks
22 months ago by
Maryam
• 0
0
votes
1
reply
634
views
Normalizing read counts while having multiple group of samples with different conditions
FPKM
normalizing
rna-seq
read-count
alignment
updated 2.1 years ago by
seidel
11k • written 2.1 years ago by
Nemo
• 0
0
votes
1
reply
545
views
Normalized read counts with FPKM
Read
FPKM
Normalize
count
RNA-Sequnce
2.1 years ago by
Nemo
• 0
2
votes
2
replies
896
views
Reference that justifies/explains an FPKM cutoff
FPKM
DEG
RNA-seq
updated 2.1 years ago by
dsull
★ 6.8k • written 2.1 years ago by
ab413
• 0
1
vote
2
replies
683
views
A question for calculating the FPKM or TPM for exons
FPKM
TPM
exon
2.2 years ago by
pxd
• 0
0
votes
0
replies
435
views
Validate RNAseq Models in Microarray Data?
microarray
rnaseq
coxlasso
fpkm
2.2 years ago by
Vitor1
▴ 120
0
votes
0
replies
356
views
Comparing FPKM/RPKM between two different datasets
FPKM
comparison
2.3 years ago by
Aleksandar
• 0
3
votes
8
replies
2.3k
views
Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
TPM
Xena
RSEM
FPKM
rna-seq
2.3 years ago by
Yang Shi
• 0
1
vote
2
replies
1.4k
views
Normalization of RNA-Seq Counts with ERCC spike-ins
TPM
ERCC
fpkm
normalization
RNA-Seq
updated 2.4 years ago by
Trivas
★ 1.8k • written 2.4 years ago by
Berta
• 0
1
vote
2
replies
673
views
FPKM values for Survival Analysis
kaplan-meier
rna-seq
Fpkm
survival
2.4 years ago by
sevcan
▴ 10
0
votes
0
replies
409
views
determination of miRNA FPKM value
mirdeep2
fpkm
cufflinks
2.5 years ago by
MS
▴ 30
0
votes
1
reply
2.9k
views
FPKM to raw count conversion
rawcounts
RNA-seq
FPKM
DEG
updated 2.7 years ago by
dsull
★ 6.8k • written 2.7 years ago by
Dominik
• 0
0
votes
5
replies
2.8k
views
How to use FPKM on DESeq processed data?
FPKM
R
deseq2
2.7 years ago by
Leo
• 0
3
votes
3
replies
1.2k
views
cut off value of fpkm
fpkm
RNA-Seq
and
updated 2.8 years ago by
seidel
11k • written 2.8 years ago by
mdfardin374
▴ 10
0
votes
2
replies
840
views
How does gexpr function in ballgown package calculate the gene expression level from transcript expression levels?
ballgown
FPKM
R
updated 2.8 years ago by
ATpoint
84k • written 2.8 years ago by
Apprentice
▴ 170
1
vote
5
replies
1.1k
views
Calculation of fpkm
p-values
fpkm
fold
log2
change
updated 2.9 years ago by
Michael
55k • written 2.9 years ago by
tthung
• 0
0
votes
0
replies
555
views
How to convert HTSeq raw read counts to FPKMs?
HTSeq
countToFPKM
counts
FPKM
read
2.9 years ago by
s.singh
▴ 70
3
votes
2
replies
952
views
Should limma DE results from FPKM data make at least certain sense?
DE
FPKM
limma
2.9 years ago by
nvera
▴ 10
0
votes
0
replies
640
views
TPM/FPKM value from HTSeq count
value
FPKM
TPM
3.0 years ago by
Nai
▴ 50
2
votes
1
reply
1.6k
views
Convert FPKM and RPKM to TPM values
Deseq2
of
fpkm
Conversion
values
updated 3.0 years ago by
Istvan Albert
101k • written 3.0 years ago by
Sandhiya
▴ 20
7
votes
3
replies
2.1k
views
Forum:
Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols
fpkm
paper
tpm
updated 3.0 years ago by
ATpoint
84k • written 3.0 years ago by
ChocoParrot
▴ 20
0
votes
0
replies
566
views
FRPK and RSEM
RNA-seq
NGS
FPKM
updated 2.3 years ago by
Ram
44k • written 3.0 years ago by
catalyst
▴ 10
0
votes
1
reply
597
views
Using FPKM value from the database
gene-expression
FPKM
updated 3.1 years ago by
Ram
44k • written 3.2 years ago by
shahbaz.ahmed
▴ 40
0
votes
2
replies
874
views
Matching the file names with exposure file in TCGA
FPKM
exposure
TCGA
updated 18 months ago by
Ram
44k • written 3.2 years ago by
nazaninhoseinkhan
▴ 530
3
votes
4
replies
1.5k
views
Using RefSeq gene annotation file to determine gene lengths
refseq
rstudio
htseq
featurelength
gtf
fpkm
geneid
updated 3.3 years ago by
Juke34
8.8k • written 3.3 years ago by
williamtmills
▴ 20
1
vote
2
replies
784
views
fpkm values mismatch
rna
topmed
seq
fpkm
3.3 years ago by
ranjits
• 0
1
vote
2
replies
3.8k
views
Cuffdiff for differential gene expression
fpkm
Cuffdiff
updated 2.1 years ago by
Ram
44k • written 8.9 years ago by
mathanyes
• 0
6
votes
7
replies
23k
views
Calculating fpkm from raw counts
RNA-Seq
R
fpkm
updated 3.0 years ago by
TheVavish
▴ 10 • written 6.4 years ago by
vinayjrao
▴ 250
2
votes
2
replies
2.6k
views
Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM, FPKM-UQ
RNAseq
FPKM-UQ
FPKM
TCGAbiolinks
TCGA
3.5 years ago by
mario.red8976
▴ 120
4
votes
6
replies
1.3k
views
RNA-Seq Data analysis
RNA-Seq
FPKM
.tsv
Salmon
volcano plots
updated 3.7 years ago by
dsull
★ 6.8k • written 3.7 years ago by
singlecell_bio
• 0
2
votes
7
replies
2.9k
views
Normalize FPKM values for cross-sample comparisons?
FPKM
RNA-Seq
Normalization
3.9 years ago by
cindy.perscheid
▴ 100
5
votes
5
replies
2.8k
views
Rna-Seq Expression For 3' Transcripts
rna
fpkm
updated 3.9 years ago by
Biostar
20 • written 12.8 years ago by
Sander Timmer
▴ 710
1
vote
1
reply
1.3k
views
htseq-count without GTF?
FPKM
count
htseq
htseq-count
gtf
updated 3.9 years ago by
ATpoint
84k • written 3.9 years ago by
blur
▴ 280
0
votes
3
replies
1.2k
views
Generating barplot of fpkm value
RNA-Seq
R
Python
fpkm
4.0 years ago by
sidrah.maryam
▴ 50
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