0
votes
0
replies
402
views
1
vote
8
replies
1.4k
views
3
votes
2
replies
794
views
2.0 years ago by
danka
•
0
0
votes
3
replies
1.5k
views
4
votes
2
replies
875
views
0
votes
5
replies
1.1k
views
updated 2.2 years ago by
Mensur Dlakic
★
28k
•
written 2.2 years ago by
smithkthedale
▴
10
0
votes
6
replies
1.2k
views
updated 2.2 years ago by
Mensur Dlakic
★
28k
•
written 2.2 years ago by
smithkthedale
▴
10
8
votes
6
replies
1.5k
views
4
votes
2
replies
655
views
2.3 years ago by
Zoya
•
0
0
votes
1
reply
566
views
2
votes
1
reply
696
views
updated 2.6 years ago by
Istvan Albert
101k
•
written 2.6 years ago by
Bing Dwen Dwen
•
0
1
vote
1
reply
713
views
updated 2.7 years ago by
Elisabeth Gasteiger
★
2.4k
•
written 2.7 years ago by
Kveta
▴
10
0
votes
0
replies
539
views
8
votes
9
replies
1.7k
views
6 follow
2.8 years ago by
zhangmeng21
▴
10
1
vote
2
replies
942
views
8
votes
5
replies
17k
views
0
votes
0
replies
715
views
0
votes
0
replies
615
views
3.1 years ago by
melissachua90
▴
70
1
vote
0
replies
5.0k
views
1
vote
1
reply
835
views
0
votes
2
replies
623
views
3
votes
2
replies
2.7k
views
updated 4.9 years ago by
zx8754
12k
•
written 13.2 years ago by
Sreevinusha
•
0
1
vote
3
replies
1.3k
views
5.5 years ago by
arunprasanna83
▴
60
0
votes
0
replies
1.3k
views
2
votes
2
replies
3.9k
views
updated 5.6 years ago by
Jean-Karim Heriche
27k
•
written 5.6 years ago by
phamtrongthang123
•
0
0
votes
3
replies
2.5k
views
updated 5.7 years ago by
jsporter
▴
60
•
written 7.5 years ago by
juan.crescente
▴
110
14
votes
11
replies
8.1k
views
13
votes
9
replies
11k
views
0
votes
0
replies
1.8k
views
8
votes
5
replies
3.5k
views
4
votes
9
replies
4.5k
views
updated 8.2 years ago by
michael.ante
★
3.8k
•
written 8.2 years ago by
Prasad
★
1.6k
3
votes
2
replies
1.8k
views
5
votes
5
replies
3.3k
views
3
votes
3
replies
2.6k
views
3
votes
6
replies
4.2k
views
3
votes
7
replies
5.5k
views
updated 3.0 years ago by
devhimd
▴
10
•
written 11.1 years ago by
ancient_learner
▴
680
6
votes
8
replies
6.3k
views
updated 11.1 years ago by
Brad Chapman
9.7k
•
written 11.1 years ago by
jcastrofigueroa
▴
140
5
votes
1
reply
4.0k
views
11.2 years ago by
Pierre Lindenbaum
164k
0
votes
5
replies
3.2k
views
updated 11.3 years ago by
Biostar
20
•
written 12.6 years ago by
Anima Mundi
★
2.9k
2
votes
2
replies
4.4k
views
updated 11.7 years ago by
Pavel Senin
★
1.9k
•
written 11.7 years ago by
Raygozak
★
1.4k
2
votes
2
replies
4.7k
views
updated 11.8 years ago by
Pierre Lindenbaum
164k
•
written 11.8 years ago by
Steve Moss
2.3k
0
votes
1
reply
2.3k
views
updated 12.0 years ago by
Istvan Albert
101k
•
written 12.0 years ago by
Nicolas Rosewick
11k
1
vote
2
replies
2.7k
views
updated 12.2 years ago by
fergycool
▴
10
•
written 12.2 years ago by
Anima Mundi
★
2.9k
0
votes
4
replies
2.3k
views
updated 12.3 years ago by
Cliff Beall
▴
480
•
written 12.3 years ago by
User 1933
▴
360
3
votes
3
replies
2.4k
views
updated 12.8 years ago by
Khader Shameer
18k
•
written 12.8 years ago by
John Jackson
▴
10
3
votes
1
reply
2.9k
views
updated 12.8 years ago by
Pierre Lindenbaum
164k
•
written 12.8 years ago by
Nicolas Rosewick
11k
20
votes
21
replies
5.3k
views
6 follow
updated 12.8 years ago by
Damian Kao
16k
•
written 12.8 years ago by
2184687-1231-83-
★
5.1k
4
votes
4
replies
2.5k
views
updated 12.8 years ago by
Fabian Bull
★
1.3k
•
written 12.8 years ago by
Adithya
•
0
58
votes
10
replies
7.0k
views
7 follow
updated 13.6 years ago by
Deena Gendoo
•
0
•
written 13.6 years ago by
Deena
▴
280
Recent Votes
Recent Locations •
All
UK, 1 minute ago
United States, 2 minutes ago
Chile, 5 minutes ago
United States, 6 minutes ago
India, 7 minutes ago
Bologna, 7 minutes ago
Sweden, 10 minutes ago
Recent Awards •
All
Popular Question to
avelarbio46
▴
30
Popular Question to
gcooper1245
▴
10
Popular Question to
ipediez93
▴
40
Popular Question to
mrashad
▴
80
Teacher to
Pierre Lindenbaum
164k
Recent Replies
Comment: Using GEOquery
by
Rohulla
•
0
I also come up with this problem. No body still answer this question.
Answer: Performing Needleman-Wunsch Global Alignment for multiple mutant proteins agains
by
Istvan Albert
101k
You can use the `bio` with the `align` tool. Install with `pip install bio` then
bio align query.fa target.fa
You can put all the tar…
Answer: Long-read sequencing data simulation using CAMISIM
by
Istvan Albert
101k
Since they explicitly have a pbsim config file, the comment you found is probably just a leftover from another config file that was copied …
Comment: RNA-Seq mutation calling without germline data
by
marionette.kent
•
0
Thanks @shred for sharing your pipeline. Can I ask if it runs each sample individually? Our HPC has limited space for each user so I have b…
Comment: Pedigree information
by
bk11
★
3.0k
Since you have plink (bed/bim/fam) files, sex information is stored in the 5th column of the `.fam` file. If that information is missing an…
Comment: The Evolution of NGS: What’s New and What’s Next?
by
i.sudbery
20k
I know its a technical possiblity. But people I know that do this say its still very much an experimental technique. You need to learn the …
Answer: Merging bfiles
by
bk11
★
3.0k
If you have common set of SNPs between your two set of bfiles `(PLINK files)`, you can use `plink --bmerge` command to merge them as follow…
Comment: The Evolution of NGS: What’s New and What’s Next?
by
Istvan Albert
101k
`rust` was not designed to be a competitor to `python`, it was designed as a competitor to `C` and `C++` -
`rust` integrates really well…
Comment: Can someone install me (remotely) Amber24?
by
Ram
44k
Do you mean you have a Windows machine that has Windows Subsystem for Linux and you're unable to install a piece of software over a remote …
Comment: Choosing the Best Method for DEG Analysis: limma vs. DESeq2 for RSEM Normalized
by
Istvan Albert
101k
Fundamentally these types of filterings come down to the effect they have on the data.
Does your filtering change the data, does it chang…
Comment: Generally how are non-canonical chromosomes treated in human variation studies
by
GenoMax
145k
This blog post may partly help: https://lh3.github.io/2017/11/13/which-human-reference-genome-to-use
Comment: Why does assigning genes with biomart give me different values than using a tran
by
bioinfo
▴
150
Do you think that I should be including the information from the scaffold patch for the quantification? Initially I used the transcript_to_…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
GenoMax
145k
It has been moved to a comment (looks like you are a moderator that seems to have come back after a long break). You can accept @dgtool ans…
Answer: Mendelian precison
by
Pierre Lindenbaum
164k
For trios and short-reads, I use delly or manta to get a join VCF of the trio (+ a few controls to discard false positives).
I then kee…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
Ian
6.1k
Thank you your suggestion on using -O worked. Makes sense in hind-sight. Sorry I couldn't select your answer as the "winner" as you poste…
Traffic: 2089 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6