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26 results • Page
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Showing top results for tag:
dplyr
•
reset
1
vote
5
replies
717
views
Failure in inner_join
dplyr
r
updated 8 months ago by
zx8754
12k • written 8 months ago by
egascon
▴ 60
0
votes
0
replies
346
views
R code for KEGG pathways output
KEGGREST
dplyr
KEGG
R
9 months ago by
doramora
▴ 10
0
votes
1
reply
496
views
Extracting observations from one dataframe to populate another
R
tibble
stringr
dplyr
tidyr
updated 12 months ago by
Ram
44k • written 12 months ago by
Rachel
• 0
1
vote
2
replies
1.4k
views
Use mutate inside for loop and write the results
R
dplyr
updated 16 months ago by
Ram
44k • written 16 months ago by
poltora4enko
▴ 10
1
vote
3
replies
4.4k
views
Error in `dplyr::mutate()`
R
dplyr
updated 3 months ago by
MH
• 0 • written 21 months ago by
shamza
• 0
2
votes
7
replies
1.4k
views
Full_join error
R
dplyr
updated 21 months ago by
Ram
44k • written 24 months ago by
Sude
• 0
0
votes
1
reply
780
views
Convert NMDS object in vegan to a tibble object
vegan
NMDS
dplyr
tibble
R
updated 2.1 years ago by
jv
★ 1.8k • written 2.1 years ago by
Paula
▴ 60
3
votes
2
replies
722
views
expanding a table by duplicating rows of a specific pattern
tidyyverse
dplyr
R
data.frame
2.4 years ago by
Assa Yeroslaviz
★ 1.9k
2
votes
5
replies
1.2k
views
How to select the variables with maximum values in each group with dplyr?
R
dplyr
updated 2.4 years ago by
rpolicastro
13k • written 2.4 years ago by
Bio
• 0
2
votes
6
replies
1.0k
views
Extract and assign data information by matching columns of two data frames
R
dplyr
updated 2.4 years ago by
rpolicastro
13k • written 2.4 years ago by
Bio
• 0
2
votes
2
replies
1.3k
views
R ggplot stacked histogram - how to plot the small proportion on top (or color last) so the color is seen?
ggplot2
R
dplyr
updated 2.5 years ago by
Matthias Zepper
5.0k • written 2.5 years ago by
Bianca
▴ 20
3
votes
4
replies
1.1k
views
R - find a pattern in rows (dinucleotide:number), turn the pattern into colname and keep the numbers in rows
dataframe
tidyr
grep
r
dplyr
2.5 years ago by
Bianca
▴ 20
0
votes
0
replies
425
views
How do I add annotation information to ped file and run on PLINK?
plink
r
bed
snps
dplyr
2.9 years ago by
melissachua90
▴ 70
0
votes
1
reply
745
views
Using a variable with the distinct() funciont
dplyr
r
updated 2.9 years ago by
DanK
▴ 10 • written 2.9 years ago by
Mgs3
▴ 30
1
vote
3
replies
1.4k
views
Subsetting/filtering a tibble by a combination of data stored in a second tibble
tidyverse
tibble
R
dplyr
3.3 years ago by
Mathias_H
▴ 20
6
votes
6
replies
1.3k
views
Divide by a specified member in a group in R
R
dplyr
updated 3.7 years ago by
Dunois
★ 2.9k • written 3.7 years ago by
mbk0asis
▴ 700
1
vote
5
replies
1.6k
views
How to sort multi columns on long dataframe in R
data.frame
Order
R
dplyr
plyr
updated 3.8 years ago by
gglim
▴ 220 • written 3.9 years ago by
mohammedtoufiq91
▴ 260
2
votes
1
reply
766
views
Convert genotypes format '12' to ACTG format
r
dplyr
updated 3.9 years ago by
cpad0112
21k • written 3.9 years ago by
api
▴ 20
4
votes
4
replies
998
views
Extracting the number of specific samples
R
reshape
dplyr
4.3 years ago by
zizigolu
★ 4.3k
3
votes
9
replies
1.8k
views
Converting a data frame to boolean values in R
dplyr
reshape
r
software error
updated 4.5 years ago by
rpolicastro
13k • written 4.5 years ago by
zizigolu
★ 4.3k
4
votes
2
replies
2.1k
views
Filter data frame with dplyr
dplyr
R
filter
updated 4.5 years ago by
rpolicastro
13k • written 4.5 years ago by
luca
▴ 70
2
votes
2
replies
1.9k
views
dplyr filter not filtering properly
dplyr
r
5.2 years ago by
c.fraser
▴ 10
4
votes
7
replies
2.1k
views
select rows with specific columns and values between two data tables ?
R
linux
if-statement
dplyr
ifelse
updated 5.5 years ago by
Chirag Parsania
★ 2.0k • written 5.6 years ago by
star
▴ 350
11
votes
4
replies
18k
views
How to name column header for first column ?
r
dplyr
updated 7.0 years ago by
cpad0112
21k • written 7.0 years ago by
Björn
▴ 110
5
votes
2
replies
23k
views
How to select columns from the dataframe based on variables from another dataframe
R
dplyr
8.1 years ago by
akhattri
▴ 50
16
votes
5
replies
3.5k
views
Forum:
For R workshop, need bio equivalent of 'diamonds' or 'nycflights13' data.
dplyr
workshop
R
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
Stephen
2.8k
26 results • Page
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Recent Votes
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Recent Replies
Comment: Unusual File Count in 10x scMultiome Data for Cell Ranger ARC Processing
by
Wu-Sheng Zhang
• 0
Hi @genomax , thank you very much for your help! I go through that page but still a little confused. 10x scMultiomics data would store scAT…
Comment: multiBamSummary
by
JC
13k
check https://broadinstitute.github.io/picard/explain-flags.html to choose a proper flag
Answer: multiBamSummary
by
JC
13k
Yes, `--samFlagExclude 16` will exclude reads in the reverse strand, you need `--samFlagInclude 16` (primary hits, reverse strand) or some …
Answer: Mapping ~100-300bp Sequences to Metagenome-Assembled Genomes
by
Mensur Dlakic
★ 29k
While I use Bowtie2, there is not a strong argument for it versus other genome aligners. I guess it is because I found a pipeline back in t…
Comment: How to convert CIGAR string to VCF?
by
cmdcolin
★ 4.1k
i think this is a good exercise (I wrote a quick code that I have used for cigar parsing in javascript https://cmdcolin.github.io/posts/202…
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
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23k
seqr now fully supports Hail but apparently there are some issues that will force yet another switch https://github.com/broadinstitute/seqr…
Answer: How to convert CIGAR string to VCF?
by
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165k
pseudo code: refpos1 = <something-clipped-start> readpos0= 0; for(CigarElement ce: cigar) { char co = ce.getOpera…
Comment: Split genotypes in VCF file
by
Biomonika (Noolean)
3.2k
vt decompose did the trick for me, followed by the filtering for 10th and 11th column. Thanks!
Comment: Extract FUngal mRNA from RNAseq Data
by
GenoMax
149k
Looks good to me.
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Arup Ghosh
3.3k
Try the [HMP client][1] to download files from their [new portal][2]. [1]: https://github.com/IGS/portal_client [2]: https://portal.h…
Comment: Extract FUngal mRNA from RNAseq Data
by
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i used the following command. Kindly let me know if i missed something or if it is now correct ``` bbsplit.sh ref=human_GRCh38.p14_genomic…
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Thank you! I finally used some code from my supervisor for the Lorenz curves, it's relatively easy, and DescTools::Gini to compute the gini…
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I'm not all that familiar with your field of research, but it would seem counterproductive to try and assemble reads of a microbial communi…
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149k
It is worth trying. You will know reads that map to the fungal reference (even though fragmented) definitely belong there. You could also…
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unfortunatly there is no chromosoem level reference genome available. But there are some genome assemblies available at scaffold or contig …
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