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Showing top results for tag:
cds
•
reset
0
votes
3
replies
306
views
Find the CDS region of the gene we are interested in in multiple unannotated genomes
genome
cds
bioinformation
updated 4 weeks ago by
GenoMax
145k • written 4 weeks ago by
雨
▴ 20
3
votes
5
replies
389
views
How to make the length of the CDS of my bed file divisible by 3?
annotation
CDS
TOGA
bed
updated 6 weeks ago by
Michael
55k • written 6 weeks ago by
blumina.r
• 0
1
vote
2
replies
396
views
snpEff database build: FATAL ERROR: No CDS checked
gtf
snpEff
CDS
10 weeks ago by
rwherman13
• 0
1
vote
1
reply
675
views
adding gene and CDS feature types in ensemble gtf annotation with transcript and exon features
GTF
GFF
transcript
CDS
exon
updated 5 months ago by
Pratik
★ 1.0k • written 5 months ago by
Sadik Muzemil
▴ 20
0
votes
0
replies
354
views
batch correction: cds from seurat
batch-correction
R
seurat
monocle3
cds
updated 5 months ago by
Ram
44k • written 5 months ago by
sooni
▴ 20
0
votes
1
reply
765
views
Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
CDS
Genome
NCBI
Genbank
updated 6 months ago by
Ram
44k • written 8 months ago by
Sowmya Pulapet
▴ 70
0
votes
3
replies
506
views
Can you suggest tools or script to get canonical sequences from a cds fasta file?
genome
cds
fasta
updated 7 months ago by
Ram
44k • written 7 months ago by
Yuto
• 0
0
votes
3
replies
518
views
Coordinates of CDS sequence
CDS
genbank
fasta
updated 7 months ago by
Mensur Dlakic
★ 28k • written 7 months ago by
hemr3
▴ 10
1
vote
2
replies
930
views
CDS phase 0,1,2 in GFF format
gff3
gff
cds
phasing
phase
13 months ago by
Pierre Lindenbaum
164k
0
votes
5
replies
813
views
Filtering CDS from a full mitogenome
filtering
CDS
mitogenome
14 months ago by
Felipe
• 0
3
votes
1
reply
821
views
Annotate CDS and UTR given transcript
annotation
GFF
GFFCompare
CDS
transcript
17 months ago by
gtho123
▴ 260
3
votes
5
replies
1.2k
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 18 months ago by
GenoMax
145k • written 18 months ago by
bitpir
▴ 250
0
votes
0
replies
512
views
Clade model C of PAML to detect positive selection in coding nucleotide sequences
selection
evolution
PAML
CDS
19 months ago by
Denis
▴ 310
0
votes
1
reply
460
views
Custom Annotaion file
CDS
5UTR
3UTR
annotation
updated 19 months ago by
barslmn
★ 2.3k • written 19 months ago by
Ali
• 0
0
votes
10
replies
3.8k
views
How to translate CDS to an amino acid sequence
translation
CDS
sequencing
updated 20 months ago by
vvasta
• 0 • written 2.3 years ago by
Max
• 0
2
votes
4
replies
913
views
Retrieve specific fasta sequences from a group of assemblies
CDS
gene
sequence
20 months ago by
SushiRoll
▴ 130
3
votes
3
replies
3.2k
views
Extract all CDS from genbank file
fasta
biopython
genbank
cds
python
updated 22 months ago by
Alban Nabla
▴ 30 • written 23 months ago by
gimenezenrico
▴ 10
1
vote
2
replies
573
views
Some transcripts have many CDSs?
CDS
transcripts
24 months ago by
Sarah
• 0
1
vote
3
replies
1.2k
views
snpEff database build error - FATAL ERROR: No CDS checked
VCF
CDS
snpEff
updated 10 weeks ago by
rwherman13
• 0 • written 2.0 years ago by
genomics_buddy
• 0
1
vote
2
replies
858
views
empty output of cds.fa from gffread
seq
extract
cds
gffread
transcript
2.0 years ago by
liyong
▴ 80
0
votes
0
replies
428
views
CDS_lenght in SnpEff output is missed
CDS
Snpeff
updated 2.1 years ago by
Pierre Lindenbaum
164k • written 2.1 years ago by
paumarc
▴ 20
0
votes
3
replies
880
views
CDS not contained within cross-referenced mRNA FEATURE
mRNA
CDS
table2asn
annotation
NCBI
updated 2.2 years ago by
Juke34
8.8k • written 2.2 years ago by
sandra.hilario
• 0
1
vote
2
replies
562
views
Multiple copies of same gene annotated
CDS
Gene
Prokka
2.3 years ago by
SK007
• 0
0
votes
1
reply
395
views
RNAseq analysis: I have read counts for all CDS. Could I use standard methods (limma-voom, edgeR) for DEA??
RNAseq
DGE
CDS
mapping
DEA
updated 2.3 years ago by
ATpoint
84k • written 2.3 years ago by
Elena
• 0
0
votes
3
replies
1.2k
views
Prokka
CDS
prokka
krona
annotation
updated 2.8 years ago by
Joe
21k • written 2.8 years ago by
amy
▴ 20
0
votes
0
replies
671
views
Why can I not reproduce some of TCGA's MAF file contexts from the coding sequences of the mutated genes?
context
MAF
TCGA
CDS
2.9 years ago by
n,n
▴ 370
1
vote
3
replies
1.4k
views
Difference between complete genome and complete CDs in NCBI
genome
NCBI
CDs
complete
updated 2.9 years ago by
GenoMax
145k • written 2.9 years ago by
Alaa Alkafaje
▴ 10
0
votes
2
replies
1.1k
views
Mapping reads to 5 UTR, 3 UTR and CDS
UTR
mapping
CDS
updated 18 months ago by
Ram
44k • written 3.1 years ago by
student12
• 0
6
votes
7
replies
2.5k
views
Extract CDS from maker gff
CDS
maker2
annotation
gff
updated 18 months ago by
lieven.sterck
15k • written 3.3 years ago by
Sarah
▴ 60
0
votes
0
replies
501
views
extract exons/introns from multiple fasta files with gene sequences
intron
splicing
fasta
CDS
exon
3.3 years ago by
ramiroricardo
• 0
2
votes
3
replies
1.2k
views
Difference between fCDS and CDS
fCDS
CDS
3.3 years ago by
Prashant
▴ 10
0
votes
0
replies
534
views
Interpretation about comparison of mapped KEGG
comparison
CDS
gene
kegg
3.4 years ago by
Jonathan Yoou
▴ 60
2
votes
2
replies
793
views
Biologically relevant open reading frame
KO
ORF
KOZAK
BLAST
CDS
updated 3.4 years ago by
Dunois
★ 2.6k • written 3.4 years ago by
kalaibarathi95
• 0
131
votes
19
replies
186k
views
13 follow
What'S The Difference Between Cds And Orf?
cds
orf
updated 3.4 years ago by
kajumi
• 0 • written 12.3 years ago by
shiy05
▴ 370
1
vote
2
replies
1000
views
CDS regions of a gene
coding
regions
CDS
two
sequences
FASTA
3.5 years ago by
ali.al-fatlawi
▴ 10
3
votes
9
replies
2.0k
views
Merging position of all different CDS of a single gene in one line
CDS
GFF
gene duplication
updated 3.6 years ago by
Biostar
20 • written 6.1 years ago by
1234anjalianjali1234
▴ 50
0
votes
2
replies
1.2k
views
ORFs finding tools
ORF
CDS
genome
getorf
findorf
updated 3.8 years ago by
Biostar
20 • written 4.3 years ago by
profnf11295
• 0
0
votes
7
replies
1.5k
views
Is there a way to do a batch extraction of DNA Coding Sequences from List of Protein Accessions (NCBI)?
eutils
ncbi
nuccore
protein
cds
3.9 years ago by
biobaker
• 0
1
vote
2
replies
1.1k
views
Mapping of CDS sequence of genes using minimap2
minimap2
mapping
fasta
CDS
updated 4.0 years ago by
lieven.sterck
15k • written 4.0 years ago by
harisanjanas
• 0
4
votes
6
replies
8.7k
views
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
Entrez Direct E-utilities
efetch
CDS
retrieve
4.1 years ago by
al-ash
▴ 210
0
votes
3
replies
1.2k
views
Multi-records genbank to CDS
CDS
genbank
biopython
4.1 years ago by
hazirliver
▴ 10
1
vote
1
reply
911
views
From consensus sequence with variants to protein
aligment
BLAST
CDS
CCDS
VCF
4.2 years ago by
Maxime
• 0
4
votes
11
replies
4.0k
views
7 follow
Getting coding sequence length
NCBI
Gene
CDS
updated 2.3 years ago by
newbio17
▴ 360 • written 4.2 years ago by
zizigolu
★ 4.3k
0
votes
2
replies
767
views
find NBCI transcript with longest coding sequence for a list of human genes
ncbi
transcript
cds
4.2 years ago by
User6891
▴ 330
1
vote
4
replies
2.2k
views
How to extract CDS zones and list to an secondary text file. Perl
perl
genome
chromosome
CDS
ORIGIN
updated 4.3 years ago by
emi_14_ar
• 0 • written 4.4 years ago by
matache.razvan911
• 0
5
votes
5
replies
1.4k
views
Ensembl and Gene Prediction Tools output CDS' not divisible by 3
GFF
CDS
ORF
updated 4.5 years ago by
ATpoint
84k • written 4.5 years ago by
NickJD
• 0
5
votes
11
replies
2.3k
views
Counting CDS's in Maker output
annotation
maker
cds
est
gene prediction
updated 4.6 years ago by
Juke34
8.8k • written 4.6 years ago by
mrmrwinter
▴ 30
5
votes
3
replies
7.0k
views
Easy Way To Map Cds Coordinates To Genomic Coordinates
cds
mapping
gff
bed
coordinates
updated 4.7 years ago by
Shicheng Guo
★ 9.5k • written 13.5 years ago by
Alper Yilmaz
▴ 100
1
vote
3
replies
704
views
How to get a sequence of Clone and do alignment?
gene
cds
clone
4.7 years ago by
isoBA
• 0
1
vote
2
replies
1.5k
views
How to identify all exons and cds in gene?
DNA
gene
exon
cds
updated 4.7 years ago by
Pierre Lindenbaum
164k • written 4.7 years ago by
isoBA
• 0
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