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Showing top results for tag: cDNA • reset
0
votes
2
replies
226
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Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidopsis
cDNA Chromosome
updated 6 days ago by 44k • written 7 days ago by ▴ 10
0
votes
0
replies
159
views
News: An Introduction to Nanopore direct RNA sequencing
cDNA RNA-seq Nanopore
updated 4 weeks ago by 44k • written 4 weeks ago by ★ 2.6k
2
votes
4
replies
708
views
Estimating transcript integrity after cDNA sequencing for long read data (Nanopore)
cDNA nanopore RSeQC
updated 8 weeks ago by 146k • written 8 weeks ago by ★ 1.4k
0
votes
4
replies
390
views
Nanopore cDNA sequencing - primary and complementary strand in one read
cDNA nanopore
updated 3 months ago by 146k • written 3 months ago by • 0
0
votes
1
reply
359
views
Stranded cDNA libraries and genome mapping
cDNA sequence strand
updated 3 months ago by ★ 1.3k • written 3 months ago by ▴ 10
3
votes
4
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711
views
How to download large-scale cDNA sequences from NCBI effectively ?
NCBI. cDNA
updated 6 months ago by 164k • written 6 months ago by ▴ 10
0
votes
7
replies
704
views
PCR-cDNA sequence from MinION not alligned
minimap2 alignment cDNA
7 months ago by marco.barr ▴ 150
0
votes
2
replies
411
views
polyA anaysis in cDNA data using FLAMAnalysis
polyT polyA nanopore cdna
8 months ago by bioinfo_ga ▴ 70
0
votes
1
reply
313
views
Issue with cDNA PCR artifact in RNA-Seq dataset
PCR RNA-seq artifact cDNA
updated 8 months ago by 4.9k • written 8 months ago by • 0
0
votes
0
replies
271
views
Long cDNA reads identification with Pinfish
long-reads cDNA nanopore pinfish
updated 6 months ago by 44k • written 9 months ago by • 0
0
votes
2
replies
619
views
circRNA isolation
circular-RNA circRNA cDNA
13 months ago by dbagmerve • 0
1
vote
1
reply
739
views
Which reference genome, DNA or cDNA and why?
or DNA cDNA
updated 14 months ago by 146k • written 14 months ago by • 0
0
votes
2
replies
939
views
How to generate cDNA file from genome FASTA and GTF?
cdna scrna-seq
updated 17 months ago by 6.2k • written 17 months ago by • 0
4
votes
5
replies
1.4k
views
How to generate GFF/GTF file from cDNA transcipts FASTA file?
gff3 gtf transcript cDNA
18 months ago by BioinfoBee • 0
0
votes
5
replies
1.2k
views
How to get human cDNA sequences together with UTR regions?
transcripts cDNA genome rna-seq
updated 19 months ago by 101k • written 19 months ago by ▴ 300
6
votes
6
replies
1.2k
views
understand the gene result in ncbi
ncbi cdna gene
updated 22 months ago by ★ 28k • written 22 months ago by ▴ 20
0
votes
0
replies
606
views
Best options for tools going from (complex) substitution name to sequence and/or from sequence to complex substitution name
cDNA SNV Sequence HGVS Fasta
2.1 years ago by LauferVA 4.5k
0
votes
0
replies
598
views
Minimap2 options for Nanopore cDNA direct seq
Nanopore cDNA minimap2 longreads DIRECT
2.6 years ago by Francisco • 0
4
votes
10
replies
2.0k
views
featureCounts cDNA vs DNA files
cDNA featureCounts subRead RNA
2.7 years ago by camppatrick ▴ 10
0
votes
0
replies
462
views
cdna file change name to locus tag prefix
rna format cdna
2.8 years ago by kodo64 • 0
0
votes
7
replies
1.5k
views
cDNA database based on genome resequencing
cDNA resequencing microarray
3.4 years ago by boczniak767 ▴ 870
0
votes
0
replies
1.2k
views
Will there be late amplification (ct value) for negative control in qPCR?
RNA QPCR cDNA
3.6 years ago by shail.nair05 ▴ 20
2
votes
6
replies
1.0k
views
GMAP intron control
GMAP mapping cDNA intron
written 3.7 years ago by • 0
1
vote
1
reply
973
views
Liquid Biopsy datasets
RNA-Seq next-gen liquid biopsy miRNA cDNA
4.1 years ago by pacocp • 0
1
vote
1
reply
1.4k
views
Snakemake input error with files from inconsistent naming scheme
snakemake MinION Nanopore cDNA
4.1 years ago by skbrimer ▴ 740
1
vote
4
replies
1.3k
views
Choice between Nanopore cDNA or direct RNA sequencing
nanopore direct RNA cDNA sequencing
4.3 years ago by Matteo Schiavinato ★ 3.6k
4
votes
2
replies
1.7k
views
Need help finding a primer for a sequence
primer cDNA PCR
updated 4.4 years ago by 20 • written 5.9 years ago by • 0
1
vote
3
replies
960
views
How to remove a part of the header from a FASTA file?
fasta FASTA genome cDNA
updated 4.4 years ago by 146k • written 4.4 years ago by • 0
3
votes
11
replies
1.9k
views
Get cDNA sequences from NCBI for given protein IDs
ncbi proteinid cdna
5.2 years ago by Chirag Parsania ★ 2.0k
2
votes
18
replies
3.0k
views
Help with finding introns
cDNA genome introns
updated 5.4 years ago by 20 • written 7.4 years ago by ▴ 120
0
votes
2
replies
1.0k
views
In MAF files, does c_position is equivalent to cDNA_positions?
MAF maf genome GDC cDNA
5.6 years ago by mariamcurbelo2061 • 0
0
votes
4
replies
1.3k
views
How to identify long reads coming from ligated cDNAs before sequencing ?
minimap2 ONT nanopore alignment cDNA
5.7 years ago by Florian Bernard ▴ 90
1
vote
2
replies
1.5k
views
How to find CDS in Gene Profile?
cDNA CDS Genbank
updated 5.9 years ago by 146k • written 5.9 years ago by • 0
3
votes
3
replies
1.4k
views
if I have a SNP on the cDNA level, how can I find the corresponding mutation on the protein level?
vcf cDNA
updated 5.9 years ago by 16k • written 5.9 years ago by • 0
7
votes
0
replies
2.9k
views
Tool: pinfish: tools to annotate genomes using long read transcriptomics data
cDNA isoform nanopore annotation RNA-Seq
updated 16 months ago by 44k • written 6.0 years ago by ★ 1.7k
3
votes
9
replies
1.9k
views
Is the union of cDNA sequences the exome?
DNA-seq cDNA exome
updated 6.1 years ago by 15k • written 6.1 years ago by ▴ 360
5
votes
7
replies
2.6k
views
Length(Ucsc/Ensgene) % 3 != 0
protein ucsc cdna translation sequence
updated 3.1 years ago by 44k • written 14.4 years ago by 164k
2
votes
2
replies
1.5k
views
mRNA transcript sequence analysis
mRNA cDNA
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 10
0
votes
1
reply
2.6k
views
TransDecoder: Filtering *_longest_orfs.pep Results
next-gen sequence cDNA TransDecoder transcriptome
updated 6.3 years ago by 35k • written 6.3 years ago by • 0
0
votes
0
replies
2.4k
views
cDNA/EST/Random library selection for transcriptome assembly
RNA-Seq cDNA EST sequencing assembly
6.5 years ago by liorglic ★ 1.4k
0
votes
1
reply
1.3k
views
Mapping changes in the Amino Acid sequence based on cDNA
cdna amino acid mapping sequence
7.1 years ago by demell.april1 • 0
0
votes
3
replies
1.5k
views
FTP for cDNAs\mRNAs
FTP cDNA mRNA
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 120
0
votes
1
reply
1.9k
views
Mapping from cDNA coordinates to genomic space
GenomicFeatures GRanges cDNA transcript
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 40
1
vote
3
replies
1.5k
views
Is there anything with a poly-A tail that isn't included in Ensembl's cDNA reference?
ensembl cdna
7.7 years ago by ericbrenner • 0
9
votes
1
reply
3.0k
views
Designing a Primer
cDNA primer clone homolog
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 20
1
vote
1
reply
1.9k
views
Getting plant full length cDNA sequences from NCBI
cDNA BLAST NCBI Update
updated 7.8 years ago by ▴ 600 • written 7.8 years ago by ▴ 60
1
vote
3
replies
2.3k
views
One sequence with multiple CDS start and end annotation with BioMart Browser
Ensembl Biomart CDS CDNA
updated 7.8 years ago by 47k • written 7.8 years ago by • 0
1
vote
1
reply
1.9k
views
How to (1) combine two loci into one gene to correct genome and (2) re-run Cuffdiff to find correct FPKM of combined gene
genomics transcriptomics RNA-Seq RNA cDNA
8.1 years ago by michael.nagle ▴ 100
4
votes
1
reply
2.2k
views
choice of reference for transcriptome assembly
RNA-Seq Assembly cDNA CDS
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 60
63
votes
8
replies
45k
views
6 follow
Why Do You Need To Use Cdna For Rna-Seq?
rna-seq cdna
updated 8.2 years ago by • 0 • written 12.1 years ago by ▴ 470
50 results • Page 1 of 1
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filterx : fast and efficient filter tool written in Rust for csv,fasta,fastq,gff,vcf,sam files.
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
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Thank you for your answer, it's very inspiring.
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Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
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Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
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Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
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The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
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What p-value do you mean? When and how did you calculate it?
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What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
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One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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