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Showing top results for tag: association • reset
0
votes
4
replies
543
views
PLINK error doing a GWAS
phenotype PLINK covariates association GWAS
updated 9 weeks ago by 11k • written 10 weeks ago by • 0
2
votes
2
replies
595
views
Association study using SNP data
Association Allele Parentage SNP
5 months ago by drajangirija • 0
11
votes
6
replies
12k
views
6 follow
Association Analysis with Plink error
SNP plink plink2 association
updated 12 months ago by • 0 • written 8.6 years ago by ▴ 60
1
vote
2
replies
679
views
Logistic Regression In R including related individuals
Biobank Association Matrices Relatedness
16 months ago by a.papadam • 0
4
votes
6
replies
1.4k
views
calculate p value and associated z score for snp-gene pair
snp association gene pvalue
17 months ago by rheab1230 ▴ 140
0
votes
2
replies
800
views
Plink-association test
association plink case-control covar
19 months ago by Viktor Messi • 0
0
votes
0
replies
500
views
How to find association between a gene-rsid and AD
association Loci LD AD
19 months ago by rheab1230 ▴ 140
2
votes
2
replies
707
views
difference between chip-seq and association study
association chip-seq TWAS
21 months ago by rheab1230 ▴ 140
0
votes
0
replies
447
views
comparison of gene models across tissues
elastinet TWAS models association
21 months ago by rheab1230 ▴ 140
3
votes
2
replies
676
views
genes associated with AD list
snp variants alzheimer association genes
21 months ago by rheab1230 ▴ 140
1
vote
1
reply
660
views
Environmental association of microsatellite dataset
microsatellite of dataset Environmental association
updated 2.0 years ago by ▴ 850 • written 2.0 years ago by ▴ 30
1
vote
0
replies
431
views
Calculating F statistics for SNP for association meta analysis
meta-analysis SNP association analysis F-statistics
2.1 years ago by seta ★ 1.9k
0
votes
1
reply
565
views
Creating dominant and recessive models for burden test
test dominant variant burden model recessive association Rare
updated 2.1 years ago by 4.3k • written 2.1 years ago by ▴ 50
7
votes
14
replies
2.8k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 2.2 years ago by 4.3k • written 2.2 years ago by ▴ 90
0
votes
3
replies
1.2k
views
Hardy-Weinberg equilibrium analysis in Plink for association study.
Plink association study
updated 2.3 years ago by • 0 • written 2.4 years ago by ▴ 50
1
vote
1
reply
492
views
Does DisGeNet propagate associations via disease ontology?
gene disgenet association disease
2.2 years ago by Yep ▴ 20
0
votes
1
reply
905
views
Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 2.4 years ago by ★ 2.9k • written 3.3 years ago by ▴ 40
0
votes
0
replies
655
views
Job: Postdoctoral Fellow in Psychiatric (Statistical) Genomics - Mount Sinai, New York City
genetics statistical genome-wide psychiatry association studies
2.6 years ago by Niamh • 0
0
votes
0
replies
441
views
statistics in metabolome-microbiome associations
microbiome association analysis metabolome statistics
2.6 years ago by ymj ▴ 10
4
votes
3
replies
994
views
PLINK dosage gives some "NA"s for dichotomic and continuous outcome after analysis
plink imputed dosage analysis association
updated 2.7 years ago by ★ 4.8k • written 2.7 years ago by ▴ 10
0
votes
0
replies
362
views
trait-associated SNP identification. GWAS alternative.
GWAS SNP VCF association
2.7 years ago by vague-barracuda-4686 • 0
0
votes
2
replies
1.4k
views
How to analyze genotype data and imputed data in GWAS study
data analysis association GWAS imputed
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
0
votes
0
replies
427
views
Guideline on phenotype transformation before GWAS?
phenotype association GWAS study transformation
2.9 years ago by j.homann • 0
0
votes
4
replies
1.1k
views
Gwas Help.
Haploid Gwas Association Genetics
updated 2.9 years ago by 2.8k • written 2.9 years ago by • 0
1
vote
3
replies
1.1k
views
Statistical technique for mutation to gene expression link
expression gene statistics mutation association tumor
updated 3.1 years ago by 3.3k • written 3.1 years ago by ▴ 30
0
votes
0
replies
534
views
Are there some methods can be used to do association analysis in a very small size group?
gwas WGS study association
3.1 years ago by Jackie • 0
0
votes
4
replies
1.5k
views
Rare variant association analysis (SKAT-O) - Power calculation
association analysis SKAT-O . Genetics
3.1 years ago by Alexandros.Frydas ▴ 30
1
vote
0
replies
505
views
Rare Variant Association analyses
Association Variant Cases Rare Controls
3.2 years ago by ClkElf ▴ 50
0
votes
0
replies
469
views
Association test to get p values and OR in plink2, and file input format
association plink2 input GWAS
3.2 years ago by Michelle • 0
0
votes
5
replies
1.4k
views
Considering the multiple test correction for the analysis of polygenic risk score association
association allele polygenic score Bonferroni
updated 3.3 years ago by ★ 2.9k • written 3.3 years ago by ★ 1.9k
0
votes
0
replies
558
views
SKAT burden analysis in R
association analysis variant skat rare
3.3 years ago by afergused • 0
0
votes
1
reply
752
views
Association analysis with SNP
association WGS GWAS SNP WES
updated 3.3 years ago by ▴ 1000 • written 3.3 years ago by ▴ 40
1
vote
3
replies
1.6k
views
How to make a vcf file using GWAS Catalog all_association.tsv file
GWAS VCF genetic association CATALOG
updated 3.5 years ago by 164k • written 3.5 years ago by ▴ 30
1
vote
4
replies
1.3k
views
Math behind association with PLINK
plink association gwas
updated 3.0 years ago by ▴ 10 • written 3.8 years ago by ▴ 20
0
votes
0
replies
1.2k
views
PLINK beta coefficient
GWAS association beta coefficient PLINK
4.0 years ago by seta ★ 1.9k
0
votes
0
replies
748
views
Is this the correct notation for the logistic regression I am trying to describe? I am very new to statistics notation and LaTeX
latex logistic regression association
4.0 years ago by curious ▴ 810
0
votes
0
replies
693
views
sim1000G for simulating case/control data
sim1000G simulation association rare variant
4.1 years ago by Gene ▴ 20
2
votes
2
replies
1.6k
views
plink case/control association analysis and Manhattan plot
SNP association plink
4.1 years ago by nayeona.hi ▴ 60
4
votes
2
replies
1.3k
views
How to check if there is an association between clustering output (groups) and phenotypic variables (gender, disease stage)
Clustering Association phenotype statistics
4.4 years ago by Bioinformatist Newbie ▴ 270
2
votes
4
replies
3.7k
views
the meaning of "NA" in plink meta-analysis result
plink NA meta association
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 20
0
votes
0
replies
625
views
Association study mtDNA
mtdna association
4.8 years ago by felissia92 • 0
0
votes
3
replies
868
views
Is it ok to use median instead of mean for phenotype data in GWAS studies?
GWAS association phenotype data
4.8 years ago by rimgubaev ▴ 340
11
votes
11
replies
12k
views
PLINK logistic regression analysis and covariates
PLINK SNP ASSOCIATION
3.6 years ago by lovegenetics ▴ 70
3
votes
14
replies
3.1k
views
Association test in Plink
plink GWAS association
updated 5.2 years ago by 12k • written 5.2 years ago by ▴ 210
1
vote
2
replies
924
views
Linkage disequilibrium in Human Mitochondrial genome
mitochondria linkage disequilibrium LD Association
updated 5.4 years ago by 10k • written 5.4 years ago by • 0
2
votes
6
replies
3.1k
views
6 follow
Job: Seeking Freelance bioinformatician
association burden gwas
updated 17 months ago by 44k • written 5.4 years ago by • 0
15
votes
4
replies
9.7k
views
Selection of a "suggestive" level of association in a GWAS study
association GWAS statistics
17 months ago by LauferVA 4.5k
1
vote
26
replies
6.8k
views
plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR values)
SNP plink association analysis
5.7 years ago by kushagraprasad24 • 0
1
vote
0
replies
2.9k
views
Linking Icd-9 Codes And Keywords With Disease Genes
cnv disease association
updated 5.8 years ago by 20 • written 10.7 years ago by ★ 3.4k
6
votes
5
replies
3.9k
views
PLINK assoc input: can it be two vcf files case/control?
PLINK vcf snps association
updated 5.9 years ago by 88k • written 5.9 years ago by ▴ 340
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What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
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