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Showing top results for tag:
algorithms
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0
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324
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Exact pattern matching: why is it more specific to look for a non-consecutive subsequence?
matching
exact
indexing
patterns
algorithms
2.0 years ago by
Bethan
• 0
0
votes
1
reply
1.6k
views
Job:
Programmer or Software Developer in Bioinformatics
genomics
algorithms
DNA-sequencing
programming
updated 2.4 years ago by
cpad0112
21k • written 2.4 years ago by
Bansal
• 0
0
votes
0
replies
450
views
heirarchical clustering of telomere sequences
clustering
telomeres
algorithms
heirarchical
2.6 years ago by
wrab425
▴ 50
0
votes
0
replies
1.1k
views
Job:
Postdoctoral Fellowship in Bioinformatics Methods at the Princess Margaret Cancer Centre
Cancer
Single-cell
Algorithms
Multi-omics
updated 19 months ago by
Ram
44k • written 2.8 years ago by
Gregory
• 0
0
votes
0
replies
473
views
Haplotype inference algorithms in Pedigrees
algorithms
pedigree
inference
snps
haplotype
3.3 years ago by
S. Roa
▴ 10
0
votes
0
replies
671
views
Job:
Postdoc in computational metabolism @ Karolinska Institutet, Stockholm
mass-spectrometry
metabolomics
networks
algorithms
3.4 years ago by
roland.nilsson
• 0
6
votes
5
replies
1.3k
views
can not understand algorithms
algorithms
3.4 years ago by
BenHu
• 0
0
votes
0
replies
1.2k
views
Job:
Postdoctoral position in Bioinformatics & Computational Genomics at UC San Diego
long-read-sequencing
algorithms
updated 16 months ago by
Ram
44k • written 3.9 years ago by
vibansal
• 0
2
votes
2
replies
1.9k
views
How to invent novel algorithm ?
Genetic risk score
Algorithms
2.0 years ago by
Yean
▴ 140
0
votes
3
replies
1.2k
views
Sorting by Prefix Reversal (or Flipping Pancakes) approximation
algorithms
updated 16 months ago by
Ram
44k • written 5.9 years ago by
Gustavo Temple
• 0
3
votes
8
replies
2.2k
views
Algorithms for finding nearest range given two lists of ranges?
algorithms
updated 16 months ago by
Ram
44k • written 6.4 years ago by
endrebak
▴ 970
3
votes
5
replies
1.6k
views
Blast computational algorithms tutorial
blast
algorithms
6.6 years ago by
emadelhewihy
• 0
4
votes
7
replies
1.4k
views
Algorithms to know when starting out analyzing transcriptome data
RNA-Seq
transcriptomics
algorithms
6.7 years ago by
dickson8988
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics-Principal Investigator at IRIC
biological-networks
deep-learning
algorithms
updated 16 months ago by
Ram
44k • written 6.9 years ago by
benoit.st-jacques
• 0
0
votes
1
reply
2.0k
views
GWAS: How to estimate probability of SNP association being result of one specific regulatory element, rather than others in LD
GWAS
SNP
LD
Algorithms
Calculus
updated 7.0 years ago by
Sam
★ 4.8k • written 7.0 years ago by
michael.nagle
▴ 100
0
votes
0
replies
2.0k
views
Job:
Senior Computational Scientist @ JAX Genomic Medicine, Farmington, CT, USA
genome
algorithms
updated 16 months ago by
Ram
44k • written 7.1 years ago by
JAX-GM
▴ 40
5
votes
7
replies
5.4k
views
Explain Forward algorithm for Hidden Markov Model
alignment
hidden markov model
algorithms
forward
7.4 years ago by
Tamador
▴ 10
0
votes
0
replies
1.6k
views
Job:
Postdoctoral Researcher in Computational Biology, Oregon Health & Science University, Portland, OR, USA
programming
algorithms
software-development
updated 17 months ago by
Ram
44k • written 7.7 years ago by
takabaya
• 0
1
vote
2
replies
2.1k
views
MSA processing algorithms in perl
perl
MSA
algorithms
7.8 years ago by
Rahul Sharma
▴ 660
3
votes
5
replies
2.1k
views
Tools for protein networks building
networks
proteins
systems biology
algorithms
8.0 years ago by
Bnf83
▴ 150
1
vote
5
replies
2.0k
views
Need help with Support Vector Machines.
machine learning
algorithms
updated 8.2 years ago by
Khader Shameer
18k • written 8.2 years ago by
spacegeek1212
▴ 30
4
votes
0
replies
1.9k
views
Job:
Post-doctoral position in algorithms for cancer data analysis
ChIP-Seq
cancer
algorithms
updated 18 months ago by
Ram
44k • written 8.3 years ago by
valentina.boeva
▴ 40
22
votes
8
replies
3.8k
views
Must know algorithms before attending a bioinformatics interview
interview
algorithms
updated 18 months ago by
Ram
44k • written 8.4 years ago by
Prakki Rama
★ 2.7k
26
votes
8
replies
4.7k
views
Forum:
Quantum Bioinformatics ahead?
algorithms
quantum-computing
updated 18 months ago by
Ram
44k • written 8.4 years ago by
Michael
55k
2
votes
5
replies
2.0k
views
Prediction of Trans membrane beta Barrels
beta barrels
trans membrane proteins
algorithms
updated 8.6 years ago by
piet
★ 1.8k • written 8.6 years ago by
katherinebridges99
• 0
0
votes
2
replies
2.0k
views
Structural alignment of compounds
alignment
algorithms
updated 8.7 years ago by
Pappu
★ 2.1k • written 8.7 years ago by
Janeeta Raja
▴ 20
3
votes
4
replies
2.0k
views
Finding the largest possible combination of mutations
next-gen
programming
algorithms
updated 2.1 years ago by
Ram
44k • written 8.8 years ago by
mkulecka
▴ 360
4
votes
5
replies
2.6k
views
approximate String matching algorithms
algorithms
approximate string matching
updated 9.6 years ago by
Biostar
20 • written 9.7 years ago by
midox
▴ 290
4
votes
4
replies
4.0k
views
HGAP assembly algorithm(help)
long-reads
algorithms
Assembly
updated 2.5 years ago by
Ram
44k • written 9.6 years ago by
midox
▴ 290
2
votes
8
replies
5.1k
views
Error correction in sequence Assembly
Assembly
error correction
algorithms
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
midox
▴ 290
1
vote
2
replies
1.8k
views
Test for between trees
sequence
algorithms
graph
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
sam
▴ 130
31 results • Page
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Recent Votes
Comment: Extracting column from one seurat object based on common column and adding to th
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The Evolution of NGS: What’s New and What’s Next?
Answer: The Evolution of NGS: What’s New and What’s Next?
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
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Comment: Sankey + dot plot
by
1769mkc
★ 1.2k
I think both since this is `geom_alluvium` this might be for the sankey
Comment: Sankey + dot plot
by
dthorbur
★ 2.4k
You still haven't elaborated on what your problem is. Are you trying to recreate the top image and the bottom is what you end up with?
Answer: Sankey + dot plot
by
Sofia
• 0
Hi, This is the header of my data: pathway GeneRatio FDR genesID count In the genesID, I have a list of genes separated by two space…
Comment: Choosing the Best Method for DEG Analysis: limma vs. DESeq2 for RSEM Normalized
by
Joe Kherery
▴ 140
Dear @Istvan Albert Based on this code I found, I need to do a part of normalization and also a part of filtering to use this data in limm…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
Ian
6.1k
Thank you for your reply @dgtool. -O looks interesting, might help if a fragment is both exon and intron in different transcripts. I look…
Answer: The Evolution of NGS: What’s New and What’s Next?
by
Bastien Hervé
5.5k
In the single cell field, I feel like the focus is now more on modalities integration to analyze datasets throughout different angles, eith…
Comment: Cross-strand correlation for paired-end ChIP-seq data
by
ATpoint
84k
> and no distinct fragment length peak What does this mean? Can you show some plots for this and a screenshot from the IGV. My personal op…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
Ian
6.1k
Thank you for your reply @benformatics! Like you I wonder whether all the different transcripts within the initial gene footprint could do…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
DGTool
▴ 230
There was a similar issue on biostars before (https://www.biostars.org/p/9544747/) where it was mentioned one possibility to include intron…
Answer: The Evolution of NGS: What’s New and What’s Next?
by
i.sudbery
20k
What I'd like to see in the next few years is: * long read read numbers get high enough for cheap enough that long read becomes standard…
Comment: The Evolution of NGS: What’s New and What’s Next?
by
i.sudbery
20k
I agree with most of this, but I'm not sure about `rust` being a `python` competitor. I'm not sure they serve the same functions - unless p…
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
by
benformatics
4.0k
Whenever I encounter something like this I move in R with GenomicAlignments and do a targeted analysis (in your case you could focus on the…
Comment: How to use output from GeneMark-ES to identify function?
by
Ian
6.1k
I am sorry, but I have not worked on this since the last post. Check you GTF and whether the delimiters are the same.
Comment: Pedigree information
by
dthorbur
★ 2.4k
You haven't asked a question, so we don't really know what you are after. I suspect you want to identify which of them is the mother and th…
Answer: The Evolution of NGS: What’s New and What’s Next?
by
GenoMax
145k
> Majority of NGS sequencing will become a commodity. Sourced out to the lowest cost provider, just like it happened with Sanger sequencing…
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