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Showing top results for tag:
Transcription
•
reset
2
votes
5
replies
364
views
Transcription factors associated with Differentially Expressed Genes
transcription
enrichment
9 weeks ago by
kamalika
• 0
0
votes
0
replies
181
views
A way to read both the DNA fragment and the nascent RNA
ChRO-seq
RNA
transcription
NET-seq
nascent
6 months ago by
Chris
• 0
0
votes
5
replies
1.2k
views
Scanning a genomic region for TFBS
Transcription
Factor
TF
TFBS
updated 14 months ago by
Alex Reynolds
35k • written 14 months ago by
Mohammed
▴ 10
4
votes
2
replies
1.4k
views
Tutorial:
How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC
transcription
factor
ChIP-seq
14 months ago by
Ming Tommy Tang
★ 4.3k
0
votes
0
replies
680
views
Job:
Postdoc in Computational Biology, Regulatory Genomics & Deep Learning
NGS
Vienna
Transcription
Machine-Learning
updated 18 months ago by
Ram
44k • written 18 months ago by
Stark
• 0
0
votes
0
replies
1.2k
views
Job:
Computational Biologist / NGS Data Analyst
NGS
Vienna
Transcription
updated 18 months ago by
Ram
44k • written 18 months ago by
Stark
• 0
1
vote
3
replies
1.4k
views
What is exactly meant by "GENCODE TSS"?
GENCODE
transcription
annotation
TSS
gene
18 months ago by
ConvolutedGenome
▴ 50
39
votes
11
replies
17k
views
11 follow
Best Database Of Transcription Factor Binding Sites
transcription
binding
database
updated 20 months ago by
nta
• 0 • written 13.6 years ago by
Dataminer
★ 2.8k
2
votes
2
replies
4.6k
views
Advantages of Biobase's TRANSFAC over and above what is freely available?
TRANSFAC
Transcription
Regulation
UCSC
TFBS
updated 20 months ago by
nta
• 0 • written 10.3 years ago by
vlaufer
▴ 290
0
votes
3
replies
851
views
How to search a .narrowPeak file for specific genes via a batch file
binding
transcription
factor
peaks
updated 21 months ago by
ATpoint
84k • written 21 months ago by
StacyG
• 0
3
votes
3
replies
804
views
Program to detect cis-regulatory modules for a non model species?
factors
transcription
22 months ago by
DNAngel
▴ 250
4
votes
6
replies
1.5k
views
Get transcription factor motif from list of gene symbols
motif
factor
R
transcription
updated 23 months ago by
Matthias Zepper
4.9k • written 23 months ago by
Trivas
★ 1.8k
4
votes
3
replies
957
views
How do you find transcription factors in a newly sequenced genome?
interproscan
factors
transcription
updated 23 months ago by
xmLiu
▴ 20 • written 23 months ago by
DNAngel
▴ 250
1
vote
1
reply
538
views
background nucleotide probability when finding TF binding sites in GRCh38
binding
transcription
factor
updated 2.0 years ago by
Matthias Zepper
4.9k • written 2.0 years ago by
chrisclarkson100
▴ 160
2
votes
3
replies
864
views
The concept of differentially expressed genes at exon and intron level
transcription
DEG
RNA-Seq
sequencing
genome
updated 2.1 years ago by
lieven.sterck
15k • written 2.1 years ago by
Apex92
▴ 300
3
votes
3
replies
1.3k
views
How to choose one TSS for every gene using Gencode annotation file?
TSS
transcription
sequencing
RNA-seq
2.1 years ago by
Apex92
▴ 300
0
votes
2
replies
1.0k
views
Retrieve transcription factors from gene set using biomaRt
factors
R
transcription
biomaRt
updated 2.1 years ago by
mmitra
▴ 60 • written 2.1 years ago by
melissachua90
▴ 70
4
votes
3
replies
975
views
transcription binding site prediction from fasta sequence
transcription
site
jaspar
updated 2.1 years ago by
ATpoint
84k • written 2.1 years ago by
newbio
• 0
0
votes
0
replies
469
views
How to count mutations to check for transcription strand bias?
strand
transcription
bias
mutations
counting
2.2 years ago by
n,n
▴ 370
1
vote
2
replies
741
views
Understanding Chip-seq data (ENCODE and other resources)
transcription
encode
factors
chip-seq
replicates
2.3 years ago by
r.kalampaliki
• 0
0
votes
0
replies
387
views
Running DoGFinder
transcription
2.3 years ago by
justinian458
• 0
0
votes
1
reply
524
views
Chromosomal location not matching the mRNA sequence
transcription
NCBI
mutation
Variant
ClinVar
updated 2.3 years ago by
Istvan Albert
101k • written 2.3 years ago by
rutikagavate13
• 0
1
vote
2
replies
620
views
Where is Regulatoryciruits.org?
database
tfs
transcription
2.3 years ago by
druggable
▴ 60
0
votes
3
replies
852
views
Transcription Factor Enrichment Analysis Using SEA of Meme-Suite
Transcription
Enrichment
MEME
SEA
Factor
updated 2.4 years ago by
Malcolm.Cook
★ 1.5k • written 2.4 years ago by
ilovesuperheroes1993
▴ 40
0
votes
0
replies
354
views
Reproducing Verhaak Classifier
Transcription
Classification
Glioblastoma
RNASeq
2.6 years ago by
mcoudertjr
• 0
0
votes
2
replies
904
views
Determining the transcription factor activators for a particular gene
regulation
tfbs
transcription
updated 2.6 years ago by
gdeniz
▴ 20 • written 2.6 years ago by
Thoth
• 0
3
votes
3
replies
1.2k
views
TET2 Binding Motifs BED file
Transcription
Factors
BED
updated 2.6 years ago by
Papyrus
★ 3.0k • written 2.6 years ago by
N
▴ 10
1
vote
3
replies
714
views
Gene transcription determination with RNA-seq data
RNA-seq
TMM
transcription
updated 2.6 years ago by
Michael
55k • written 2.6 years ago by
chansik
▴ 10
1
vote
1
reply
595
views
de novo Transcription Factor Discovery for a Single Gene
Analysis
FASTA
Motif
Transcription
Factor
updated 2.7 years ago by
Michael
55k • written 2.7 years ago by
Sai Prasada
• 0
1
vote
1
reply
676
views
How to obtain list of transcription factors and their sequence binding motifs?
factor
tf
transcription
r
updated 2.9 years ago by
Ankit
▴ 500 • written 2.9 years ago by
Adam
• 0
0
votes
0
replies
415
views
Transcription factor binding site information
factor
JASPAR
transcription
2.9 years ago by
Susana
• 0
0
votes
0
replies
509
views
Functional Classification of Transcription Factor
factor
database
transcription
3.0 years ago by
axolotl
• 0
0
votes
1
reply
605
views
Interpreting TFBS enrichment from random genomic regions
opossum
meme
homer
transcription
factor
tfbs
updated 3.1 years ago by
ATpoint
84k • written 3.1 years ago by
Notorious ATG
• 0
0
votes
1
reply
777
views
Transcription Factor Functions
factor
database
transcription
updated 3.1 years ago by
Alex Reynolds
35k • written 3.1 years ago by
axolotl
• 0
1
vote
2
replies
2.5k
views
Where to download a table of operons with genes for E. coli?
operon
genes
e coli
transcription
units
updated 3.1 years ago by
rioualen
▴ 750 • written 8.1 years ago by
O.rka
▴ 740
7
votes
5
replies
1.3k
views
Why does Txdb transcript length not always match to transcript end-start position?
biomart
transcript
Txdb
length
transcription
updated 3.2 years ago by
i.sudbery
20k • written 3.2 years ago by
Sora Yoon
▴ 20
0
votes
0
replies
412
views
If a gene has geater number of Transcription Factor Binding Sites ?
TFBS
Gene
Transcription
sites
binding
regulation
3.2 years ago by
iqra
• 0
1
vote
1
reply
655
views
Identify the potential TF involved in the regulation of DEGs
Transcription
factors
gene
list
R
updated 3.2 years ago by
Zhilong Jia
★ 2.2k • written 3.3 years ago by
ryme
▴ 30
2
votes
2
replies
1.1k
views
Gene Regulatory Networks on Single Cell RNAseq Datasets
GRN
Transcription
scRNAseq
ChIPseq
Factors
3.3 years ago by
fouerghi20
▴ 80
0
votes
3
replies
1.1k
views
Help! Master regulator prediction from DEGs in RNA-seq
GRN
transcription
rna-seq
DEG
transcriptomics
updated 3.4 years ago by
MohammadAlkadi
▴ 70 • written 3.4 years ago by
ngarber
• 0
1
vote
1
reply
861
views
Trimming gene coding sequence for finding TFBS
tfbs
transcription
binding
rna-seq
3.4 years ago by
greyman
▴ 190
0
votes
3
replies
815
views
Rna seq analysis
factors
transcription
motif
3.4 years ago by
rheab1230
▴ 140
0
votes
0
replies
475
views
correlation of WGBS dataset and RNAseq dataset
transcription
methylation
3.4 years ago by
frylhc
• 0
4
votes
7
replies
2.4k
views
How to choose one TSS for a gene
transcription
site
tss
start
3.4 years ago by
GG
• 0
0
votes
5
replies
1.1k
views
transcription factor activation order
transcription
updated 3.5 years ago by
ATpoint
84k • written 3.5 years ago by
kenny
• 0
2
votes
2
replies
671
views
Differences between codon usage bias vs. differential transcript usage (DTU)
codon
transcription
dtu
genome
splicing
updated 3.6 years ago by
Mensur Dlakic
★ 28k • written 3.6 years ago by
nickpark1997
• 0
0
votes
0
replies
677
views
RAP-seq datasets but no corresponding RNA-seq
RNA-Seq
TRAP-Seq
Translation
Transcription
3.9 years ago by
ATCG
▴ 400
16
votes
2
replies
5.2k
views
Transcription Factor Binding Sites
transcription
binding
r
pssm
updated 4.3 years ago by
Biostar
20 • written 12.5 years ago by
Davy
▴ 210
3
votes
9
replies
13k
views
6 follow
Cuffdiff Says Sam Isn'T Sorted, Although It Handled It Cufflinks
cufflinks
transcription
gene
bowtie
tophat
updated 4.3 years ago by
1152389206
• 0 • written 12.5 years ago by
Rubellus
▴ 10
0
votes
3
replies
867
views
Test if a list of genes with coordinates are expressed (hisat2 data)
RNA-Seq
transcription
updated 4.3 years ago by
khorms
▴ 230 • written 4.3 years ago by
Chvatil
▴ 130
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