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Showing top results for tag: Statistics • reset
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149
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Best Practices for Handling Negative Values in MFI Data after log base 2 transformation with median normalization
normalization statistics log-transformation
updated 2 days ago by 44k • written 2 days ago by • 0
0
votes
2
replies
169
views
xCell output and immune cell ratio
statistics immunedeconv xCell
20 hours ago by a.stef.44 ▴ 10
0
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0
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134
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Comparison of biodiversity between two locations with a known maximum number of species
shannon ecologie statistics biodiversity
18 days ago by y. • 0
1
vote
0
replies
310
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Job: Assistant Professor (tenure-track) and Professor (tenured) positions in Data Science
statistics faculty data-science
updated 8 weeks ago by 44k • written 8 weeks ago by ▴ 10
0
votes
0
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215
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News: Course in Italy: Introduction to Statistics in R (30 September to 3 October 2024)
R GLM Statistics GLMM
9 weeks ago by carlopecoraro2 ★ 2.6k
0
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0
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166
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Selection statistics help
statistics genome selection
updated 12 weeks ago by 44k • written 12 weeks ago by • 0
1
vote
0
replies
190
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how to perform QTL analysis and how to integrate multi-omit datasets
R statistics genetics
12 weeks ago by Bioinfonext ▴ 470
3
votes
8
replies
728
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Differential analysis of enrichment results
statistics enrichment
3 months ago by Aspire ▴ 360
2
votes
1
reply
313
views
Associations with small-ish patient clinical data with bulk RNA-seq expression
statistics ai rna-seq stats machine-learning
updated 3 months ago by ★ 2.1k • written 3 months ago by ▴ 20
0
votes
2
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1.1k
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Statistical analysis for proteomic data with more than one effect in the model
proteomic statistics model two effects
updated 3 months ago by 146k • written 4.0 years ago by • 0
0
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0
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232
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Compute percentage normalization of gene expression in diseased samples vs healthy controls
statistics RNA-seq DESeq2
3 months ago by Dataminer ★ 2.8k
3
votes
2
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378
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Statistical analysis of quantified proteomic data: ctrl vs. mut
statistics proteomics
updated 4 months ago by 85k • written 4 months ago by • 0
1
vote
3
replies
664
views
Error when looping over multiple columns in a data frame in R
Statistics R
updated 5 months ago by ▴ 930 • written 5 months ago by ▴ 30
1
vote
1
reply
332
views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics R
updated 5 months ago by 85k • written 5 months ago by ▴ 10
1
vote
2
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559
views
How to interpret infinite odds ratio?
statistics
5 months ago by Lukas • 0
0
votes
4
replies
565
views
Correlation Analysis
statistics methylation NGS expression
5 months ago by Researcher ▴ 30
1
vote
1
reply
397
views
Adjust pvalue in R with different approach give me all different outcome
statistics R p-value
updated 6 months ago by 44k • written 6 months ago by ▴ 60
0
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0
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245
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 6 months ago by 44k • written 6 months ago by ★ 2.6k
0
votes
0
replies
279
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 6 months ago by 44k • written 6 months ago by ★ 2.6k
3
votes
2
replies
473
views
p-value and Boneferroni adjusted p-value the same in R
Bonferroni R Statistics p-value Fisher
6 months ago by kristiewyleung • 0
0
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0
replies
242
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 6 months ago by 44k • written 6 months ago by ★ 2.6k
0
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0
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323
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 6 months ago by 44k • written 6 months ago by ★ 2.6k
0
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4
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579
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
12 weeks ago by mropri ▴ 160
11
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9
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12k
views
10 follow
Genome assembly statistical tools
Assembly statistics
updated 6 months ago by • 0 • written 5.2 years ago by ▴ 10
0
votes
2
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381
views
How to detect and visualize ORFs in bacterial genome?
statistics visualization ORFs genome
6 months ago by marongiu.luigi ▴ 710
2
votes
3
replies
478
views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics RNA-Seq p-value
updated 7 months ago by 44k • written 7 months ago by • 0
2
votes
1
reply
399
views
Choosing an FC Threshold
statistics rna-seq
updated 7 months ago by ★ 7.5k • written 7 months ago by • 0
0
votes
2
replies
407
views
how to run limma for large datasets
R HPC biostatistics statistics
updated 7 months ago by 44k • written 7 months ago by ▴ 470
0
votes
1
reply
282
views
How to perform enrichment p-value for a motif
Enrichment statistics
updated 7 months ago by ★ 1.8k • written 7 months ago by ▴ 300
1
vote
1
reply
427
views
robust linear regression with interaction term
R epigenetic biostatistics statistics
updated 7 months ago by ▴ 930 • written 8 months ago by ▴ 470
0
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0
replies
230
views
Do I have enough reads for virome analyis?
metagenomics HiSeq virome statistics reads
8 months ago by Mageiros • 0
1
vote
1
reply
390
views
Heteroscedasticity in RNA-seq data
RNA-seq Statistics
updated 8 months ago by 20k • written 8 months ago by • 0
1
vote
3
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605
views
Why statistic test should I use?
Statistics
updated 8 months ago by 15k • written 8 months ago by • 0
0
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0
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344
views
News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 9 months ago by 44k • written 9 months ago by ★ 2.6k
1
vote
2
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600
views
how to do Manhatton plot for significant DNA methylation sites associations
R array EPIC statistics Epigenetics
9 months ago by Bioinfonext ▴ 470
0
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0
replies
357
views
how convert a GraphPad PRISM parameters in R code?
R statistics regression
9 months ago by star ▴ 350
1
vote
1
reply
356
views
how arrange samples columns according to row names from another file in R
statistics r biostatistics
updated 9 months ago by 13k • written 9 months ago by ▴ 470
3
votes
2
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517
views
how to merge two files without duplicating same column
R statistics biostatistics
updated 9 months ago by ▴ 450 • written 9 months ago by ▴ 470
0
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0
replies
343
views
News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
9 months ago by carlopecoraro2 ★ 2.6k
5
votes
4
replies
1.0k
views
Can LASSO be applied after converting and merging different RNAseq datasets into the same type of normalization data (e.g., FPKM, RPKM, CPM)?
Statistics ML Lasso
9 months ago by memrekus ▴ 10
2
votes
1
reply
384
views
Statistical analysisi in DESeq2 with different condition
statistics DESeq2
updated 9 months ago by ★ 1.5k • written 9 months ago by ▴ 20
1
vote
1
reply
465
views
ANOVA vs T-test for comparing groups in timepoints?
R statistics
updated 10 months ago by ▴ 170 • written 10 months ago by • 0
1
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4
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588
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select unique samples in R
statistics r biostatistics
10 months ago by Bioinfonext ▴ 470
6
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3
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907
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How can I adjust Y-axis scale when making relative abundance box plot ?
statistics box-plot R scale_adjustment logarithm
updated 11 months ago by ▴ 930 • written 11 months ago by ▴ 40
0
votes
0
replies
274
views
RNASeq vs TermSeq
RNAseq statistics TermSeq
11 months ago by npb27 • 0
0
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0
replies
287
views
miRNA variant association analysis - Power calculation (SKAT-O)
statistics SKAT-O RVAS miRNAs
11 months ago by Alexandros.Frydas ▴ 30
0
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2
replies
458
views
filtering samples
R statistics
updated 12 months ago by 146k • written 12 months ago by ▴ 470
0
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0
replies
425
views
News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 11 months ago by 44k • written 12 months ago by ★ 2.6k
2
votes
6
replies
791
views
how to merge multiple files based on column header
R statistics biostatistics
updated 12 months ago by 6.2k • written 12 months ago by ▴ 470
0
votes
2
replies
605
views
R packages for DNA methylation as mediator analysis
statistics R EPIgenetics array EPIC
12 months ago by Bioinfonext ▴ 470
50 results • Page 1 of 1
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
Comment: How to determine whether it is 10x data by king • 0
Thank you for your answer, it's very inspiring.
Comment: Inquiry about depth of coverage and copy number variation by Chen • 0
Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
Comment: Can a read be aligned more than once? by GenoMax 146k
Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
Comment: Statistical test to be used for dataset by allingt • 0
The choice of test depends on the types of variables involved and the hypothesis you have. But most importantly on the question you want am…
Comment: dittoHeatmap; adding column labels on the heatmap by jared.andrews07 ★ 18k
I'd consider making a [block annotation](https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#block-annotation…
Comment: Comparing GSEA mutant data to wild type by allingt • 0
What do you mean by "significant gene"? How did you perform GSEA and on how did you rank your genes for it? From guesswork I might initiall…
Comment: Genes of Interest in a Multi-Tissue Analysis by allingt • 0
The DESeq2 manual tells us that the object class of vst() output is a subclass of RangedSummarizedExperiment. I suspect the methods applica…
Comment: WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendr by allingt • 0
Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
Comment: Why does WGCNA use weighted correlation instead of Pearson correlation? by allingt • 0
The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
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any idea, how can I display the labels Pre and POst on the top of the heatmap? I am looking at complexheatmap package as to how they displa…
Comment: How can I determine the p-value of genes within each identified module in WGCNA? by allingt • 0
What p-value do you mean? When and how did you calculate it?
Answer: What is a genomic range that would almost always get decent WGS coverage but is by i.sudbery 20k
What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input by i.sudbery 20k
One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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