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Showing top results for tag: Single-end • reset
0
votes
3
replies
369
views
Cross-strand correlation for paired-end ChIP-seq data
paired-end ChIP-seq RelCC single-end
updated 4 weeks ago by 4.3k • written 4 weeks ago by • 0
0
votes
1
reply
315
views
Integration of paired and single-end SRA
Paired-end Single-end VCF Resequencing
updated 6 weeks ago by 20k • written 6 weeks ago by ▴ 300
0
votes
1
reply
345
views
Fragment size of published single end RNAseq data
NGS single-end RNA-seq RSEM
updated 3 months ago by 44k • written 3 months ago by • 0
0
votes
3
replies
335
views
Detection of chimeric HIV-Host transcripts
single-end HIV chimeric-transcripts
updated 3 months ago by 44k • written 3 months ago by • 0
6
votes
3
replies
487
views
Does single-end short-read sequencing affect the mapping of mitochondrial and ribosomal RNA?
pair-end single-end RNA-seq
updated 3 months ago by ▴ 270 • written 3 months ago by ▴ 190
0
votes
2
replies
665
views
Atac-seq shift single-end data
single-end atac-seq
updated 3 months ago by 85k • written 10 months ago by ▴ 120
0
votes
0
replies
243
views
ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
4 months ago by sarahmanderni ▴ 120
0
votes
2
replies
445
views
Using velocyto on 3'UTR 10x single-cell RNA-Seq data
single-cell single-end 10x velocyto
7 months ago by Sergio • 0
0
votes
4
replies
648
views
ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq.gz
fastq single-end ENA
8 months ago by Aaliya • 0
0
votes
1
reply
349
views
Which FLASH parameters to use?
paired-end flash single-end merged
updated 8 months ago by 146k • written 8 months ago by • 0
5
votes
1
reply
642
views
Single-end strand specific Rna-Seq: Which strand that the reads from.
mRNA Single-end strand-specific TruSeq
updated 14 months ago by ★ 1.9k • written 14 months ago by ★ 1.3k
2
votes
7
replies
1.1k
views
Automatically detecting paired end reads.
pipeline automation paired-end single-end fastq
updated 16 months ago by 44k • written 16 months ago by • 0
2
votes
1
reply
517
views
How to analyze mars-seq single end-read scRNAseq data?
cellranger single-end scRNAseq
updated 17 months ago by 85k • written 17 months ago by ▴ 20
4
votes
7
replies
1.3k
views
Combining data from single- and paired-end sequencing done on same samples
bulk Illumina RNA-seq System Ovation single-end NextSeq 550 paired-end Universal
18 months ago by tise.suz ▴ 10
0
votes
1
reply
782
views
single-end read for scRNA-seq data
scRNA-seq 10X single-end
updated 18 months ago by 85k • written 18 months ago by ▴ 10
0
votes
0
replies
421
views
Does the bigwig file of a single-end chip-seq shows 2 peaks for a fragment whereas the paired-end show one peak ?
peak chip-seq bigwig single-end
updated 19 months ago by 44k • written 19 months ago by ▴ 20
6
votes
5
replies
2.2k
views
FASTQ-dump: --split-files: Rejected 5 READS because READLEN < 1
reads single-end
updated 24 months ago by 146k • written 24 months ago by • 0
4
votes
0
replies
752
views
Convert ONE pair-end BAM file to ONE single-end BAM file with merged mates (i.e. merging the paired reads coverage)
MACS2 BAM paired-end single-end
updated 15 months ago by 44k • written 24 months ago by ★ 1.3k
4
votes
6
replies
1.4k
views
Single-End to reduce cost for Differential Expression Analysis ?
expression single-end differential analysis ngs deg
3.3 years ago by Evan ▴ 230
1
vote
1
reply
1.4k
views
Do I need to assume differences in coverage profile when I compare the first reads from paired end data with single end read data?
single-end paired-end sequencing mapping coverage
updated 3.5 years ago by 146k • written 3.5 years ago by • 0
1
vote
8
replies
1.7k
views
Collapsing my paired-end reads before or after mapping ?
paired-end mapping single-end collapse
updated 3.8 years ago by 20 • written 3.8 years ago by ▴ 30
0
votes
0
replies
581
views
Calling copynumbers from Single-end GBS (genome by sequencing) data
CNV GBS single-end Control-FREEC
4.1 years ago by mikeruigrok • 0
2
votes
4
replies
1.0k
views
How to recognize single-end fastq files
RNA-Seq Fastq single-end
updated 4.6 years ago by 146k • written 4.6 years ago by ▴ 400
1
vote
1
reply
1.5k
views
Are single-end reads processed the same as paired-end reads regarding strandedness?
RNA-Seq featureCounts strandedness single-end
updated 5.1 years ago by 85k • written 5.1 years ago by ▴ 40
6
votes
4
replies
3.3k
views
Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
RNA-Seq single-end paired-end salmon
5.2 years ago by nanoide ▴ 120
3
votes
4
replies
2.0k
views
ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ENA
updated 5.2 years ago by 27k • written 5.2 years ago by ▴ 180
12
votes
13
replies
6.4k
views
Running STAR aligner with paired-end and single-end reads simultaneously
STAR RNA-Seq paired-end single-end
5.6 years ago by nanoide ▴ 120
6
votes
1
reply
3.2k
views
Single-end vs Pair-end RRBS methyation sequencing
single-end pair-end RRBS BS-seq
updated 6.1 years ago by 44k • written 8.7 years ago by ★ 9.5k
0
votes
6
replies
8.1k
views
Bowtie error: Could not locate a Bowtie index corresponding to basename
bowtie ChIP-Seq single-end hg19 alignment
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 60
1
vote
7
replies
2.0k
views
solution for SPades to assemble genome with low quality data
spades Assembly ion-torrent single-end
updated 6.3 years ago by 5.3k • written 6.3 years ago by • 0
3
votes
6
replies
2.5k
views
How to get ungapped single-end reads from the STAR output bam file?
RNA-Seq STAR ungapped single-end
updated 6.3 years ago by 164k • written 6.3 years ago by ★ 1.9k
35
votes
9
replies
26k
views
10 follow
Check if BAM is derived from pair-end or single-end reads?
BAM Pair-End Single-End
updated 2.7 years ago by ▴ 10 • written 8.7 years ago by ▴ 80
2
votes
4
replies
1.9k
views
denovo assembly combining multiple data sets
denovo paired-end single-end illumina IonTorrent
6.8 years ago by slimane.khayi ▴ 80
0
votes
3
replies
2.6k
views
How to improve alignment quality of ChIP-seq for single-end
ChIP-Seq alignment bowtie2 quality single-end
6.9 years ago by jule • 0
27
votes
33
replies
18k
views
high % of reads mapped to multiple loci after STAR mapping
RNA-Seq STAR single-end
updated 6.9 years ago by ▴ 990 • written 6.9 years ago by ★ 1.3k
5
votes
12
replies
6.0k
views
Should I remove all the overrepresented sequences to improve GC content in fastqc?
fastqc RNA-Seq single-end overrepresented
6.9 years ago by Lila M ★ 1.3k
1
vote
3
replies
3.9k
views
Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
featurecounts paired-end single-end multi-overlap
updated 24 months ago by ▴ 240 • written 6.9 years ago by ▴ 50
4
votes
13
replies
4.7k
views
Illumina NextSeq 500/550: PE or SE for ChIP seq and coverage?
paired-end single-end sequencing library
updated 6.9 years ago by 104k • written 6.9 years ago by ★ 1.3k
1
vote
5
replies
2.3k
views
RNA-Seq single end 50 bp - will tophat Cufflinks/cuffdiff work for differential expression
RNA-Seq cufflinks cuffdiff single-end 50bp
7.8 years ago by oriolebaltimore ▴ 190
3
votes
5
replies
3.1k
views
miseq single end run
miseq sequencing illumina single-end
updated 2.1 years ago by 44k • written 9.2 years ago by ★ 1.9k
2
votes
1
reply
1.9k
views
smallRNA-seq, but have files R1/R1fastq?
fastq smallRNAs single-end
updated 21 months ago by 44k • written 9.5 years ago by ▴ 150
0
votes
2
replies
3.3k
views
Samtools MPILEUP on single-end/paired-end data
samtools mpileup paired-end single-end
updated 2.6 years ago by 44k • written 9.8 years ago by • 0
1
vote
0
replies
2.7k
views
Mobile element insertion detection from single-end datasets
Single-end Mobile-element
updated 2.6 years ago by 44k • written 9.9 years ago by 104k
43 results • Page 1 of 1
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