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49 results • Page
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Showing top results for tag:
ROH
•
reset
3
votes
5
replies
730
views
ROH and Manhattan plot
ROH
Manhattan
plink
updated 4 months ago by
bk11
★ 3.0k • written 4 months ago by
Star:)
▴ 50
0
votes
0
replies
321
views
ROH with genome in scaffolds
ROH
scaffolds
BUSCO
whole-genome
8 months ago by
Kimbeer
• 0
0
votes
0
replies
319
views
How to use --chr flag (vcftools --LROH) with a vcf file that uses scaffold notation
vcftools
scaffold
ROH
9 months ago by
ekirsch
• 0
0
votes
1
reply
347
views
R studio help - ROH
R
ROH
updated 3 months ago by
mmisalem
• 0 • written 9 months ago by
u19010843
• 0
0
votes
0
replies
785
views
Error: Failed to open /ROH/.log. Try changing the --out parameter.
plink
ROH
10 months ago by
sevda
• 0
0
votes
5
replies
927
views
Data Import Issue detectRUNS R
R
detectRUNS
ROH
updated 13 months ago by
Ram
44k • written 13 months ago by
Whirlingdaf
▴ 60
0
votes
0
replies
353
views
make compeletly homozygous allele sample
plink
ROH
map
ped
21 months ago by
재원
• 0
1
vote
3
replies
1.8k
views
Calculate inbreeding coefficient out of ROH (Plink)
PLINK
ROH
updated 12 months ago by
dr.fakharunnisa
• 0 • written 2.2 years ago by
Manuela
• 0
0
votes
0
replies
549
views
detectRUNS R package error
mapping
detectRUNS
R
ROH
homozygosity
2.2 years ago by
Roisin Marie
• 0
0
votes
0
replies
484
views
Require composite script of Hp and ROH statistics
ROH
Pooled-heterozygosity
github
script
2.4 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
460
views
Using PLINK for (ROH) analysis using full genome
map
ped
vcf
roh
plink
updated 2.5 years ago by
GenoMax
146k • written 2.5 years ago by
taimur.al-said
▴ 10
1
vote
0
replies
488
views
How can I draw manhattan plot by ROH value?
roh
plink
2.7 years ago by
Star:)
▴ 50
0
votes
0
replies
360
views
Defining ROH classes
length
ROH
classes
2.7 years ago by
Rafael
• 0
0
votes
0
replies
1.4k
views
ImportError: cannot import name 'ft2font' from partially initialized module 'matplotlib'
bcftools
matplotlib
roh
plot-roh.py
updated 16 months ago by
Ram
44k • written 2.7 years ago by
taniamahmood38
▴ 60
2
votes
2
replies
857
views
How to resolve the warning message in detectRUNS on R software
bcftools
detectRUNS
roh
R
updated 16 months ago by
Ram
44k • written 2.7 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
405
views
How to make Genetic map file required by bcftools
bcftools
genetic-map
roh
updated 16 months ago by
Ram
44k • written 2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
532
views
BCFtools roh analysis: Number of --estimate-AF samples: 0
bcftools
roh
AF
updated 16 months ago by
Ram
44k • written 2.8 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
925
views
Multiple samples in PLINK
gvcf
plink
roh
variants
2.8 years ago by
Begonia_pavonina
▴ 200
0
votes
0
replies
358
views
Size of Homozygosity Block in HomozygosityMapper tool
ROH
2.9 years ago by
Fatimahakam057
• 0
0
votes
0
replies
536
views
Signature of selection using Runs of homozygosity outputs in Beagle software
selection
Signature
Beagle
ROH
of
2.9 years ago by
Rafael
• 0
0
votes
0
replies
488
views
Beagle with ROH output
Plink
outputs
Beagle
ROH
2.9 years ago by
Rafael
• 0
0
votes
1
reply
866
views
identification of ROH using plink
Plink
ROH
GATK
vcf
updated 2.7 years ago by
ramshahaya
▴ 10 • written 3.0 years ago by
Adarsh Kuamr
▴ 60
0
votes
1
reply
1.7k
views
Runs of homozygosity in Plink
ROH
Plink
flags
updated 3.0 years ago by
GokalpC
▴ 100 • written 3.0 years ago by
Rafael
• 0
0
votes
0
replies
1.0k
views
plotting roh from bcftools
bcftools
roh
plotting
3.1 years ago by
gubrins
▴ 350
2
votes
6
replies
2.1k
views
How can I draw this plot?
bcftools
roh-calling
roh
samtools
updated 2.7 years ago by
gubrins
▴ 350 • written 3.5 years ago by
mohammadhassanj
▴ 260
3
votes
3
replies
1.7k
views
bcftools roh with -e option... never finish
bcftools
roh
updated 2.6 years ago by
CaffeSospeso
▴ 50 • written 4.8 years ago by
emma.a
▴ 130
0
votes
0
replies
629
views
Filter VCF Variants from ROH File
WGS
roh
4.0 years ago by
victorrigu
• 0
1
vote
2
replies
1.7k
views
Interpreting output of BCFtools RoH
roh
bcftools
updated 2.8 years ago by
vinay
• 0 • written 4.0 years ago by
fasaba
▴ 10
0
votes
0
replies
789
views
RoH for nonmodel species aligned to closely related reference (exomes)
ROH
exome
WES
nonmodel species
4.2 years ago by
eeheberlein
• 0
0
votes
0
replies
1.2k
views
Question about bcftools roh --estimate-AF function
ROH
4.5 years ago by
60343011s
▴ 50
2
votes
3
replies
1.0k
views
confused about bcftools roh --ignore-homref option
bcftools
roh
4.8 years ago by
Duarte Molha
▴ 240
1
vote
0
replies
948
views
How can I count the number of time the SNP appearance on ROH?
SNP
roh
updated 5.2 years ago by
zx8754
12k • written 5.2 years ago by
mary
▴ 210
4
votes
3
replies
3.3k
views
what do the bcftools ROH output "markers & quality" fields indicate ?
sequencing
ROH
updated 2.6 years ago by
taniamahmood38
▴ 60 • written 5.3 years ago by
Inquisitive8995
▴ 280
2
votes
6
replies
3.2k
views
Problem with bcftools roh
bcftools
roh
homozygosity
5.7 years ago by
noushin.farnoud
▴ 130
0
votes
0
replies
1.1k
views
How can I allow to hetro and missing genotype in ROH detection?
ROH
plink
hetro
missing
updated 6.1 years ago by
zx8754
12k • written 6.1 years ago by
mary
▴ 210
0
votes
1
reply
1.0k
views
Run of homozigosity on multiple imputed chips
SNP
ROH
imputation
updated 6.1 years ago by
Kevin Blighe
88k • written 6.2 years ago by
giovanni.birolo
• 0
0
votes
0
replies
1.1k
views
Understanding output of GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification tool
roh
genomics
population genomics
6.1 years ago by
hafiz.talhamalik
▴ 350
0
votes
4
replies
2.3k
views
run plink with locus has more than 2 alleles
plink
snps
ROH
6.3 years ago by
mary
▴ 210
3
votes
8
replies
6.0k
views
How to run bcftools roh with multiple samples vcf
bcftools
roh
updated 6.4 years ago by
finswimmer
16k • written 6.4 years ago by
BAGeno
▴ 190
2
votes
2
replies
2.3k
views
Runs of homozygosity calculation
plink
bcftools
roh
updated 6.4 years ago by
Wietje
▴ 240 • written 6.4 years ago by
BAGeno
▴ 190
4
votes
4
replies
2.5k
views
Detect the Runs of Homozygosity with the WGS data
ROH
WGS
updated 6.5 years ago by
Kevin Blighe
88k • written 6.5 years ago by
zhang248
▴ 40
1
vote
1
reply
1.5k
views
Identification of Common ROH region between two exomes
ROH
Filtus
BCFTOOLs
EXOME
updated 6.6 years ago by
Biostar
20 • written 6.6 years ago by
nkausthu
▴ 30
1
vote
1
reply
2.4k
views
estimating inbreeding from runs of homozygosity
ROH
SNP
updated 6.7 years ago by
Kevin Blighe
88k • written 6.7 years ago by
Tears
• 0
1
vote
4
replies
2.3k
views
Runs of homozygosity
ROH
Overlapping ROH
Plink
updated 7.1 years ago by
Kevin Blighe
88k • written 7.1 years ago by
Sharon
▴ 610
0
votes
2
replies
2.1k
views
Runs of Homozygosity
genetics
ROH
Autozygosity
7.2 years ago by
Sharon
▴ 610
5
votes
2
replies
6.4k
views
ROH ( Runs of Homozygosity Analysis)
ROH
WGS
7.4 years ago by
always_learning
★ 1.1k
0
votes
0
replies
2.1k
views
Calculate ROH in whole-genome sequencing data with plink1.9
plink1.9
plink2
ROH
WGS
8.6 years ago by
wanabi
▴ 60
0
votes
0
replies
1.8k
views
ROH Comparing for different popoulation
Homozygosity
Population-genetics
ROH
updated 2.0 years ago by
Ram
44k • written 9.3 years ago by
yasminkot2012
• 0
2
votes
1
reply
8.2k
views
ROH by PLINK
plink
ROH
updated 21 months ago by
Ram
44k • written 9.5 years ago by
afadda
▴ 20
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