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50 results • Page
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Showing top results for tag:
RNASeq
•
reset
0
votes
0
replies
26
views
How to find the adapter sequence of an RNAseq dataset?
fastQC
trimming
adapter
RNAseq
2 hours ago by
Maryam
• 0
5
votes
3
replies
386
views
Selecting DEGs for gene ontology using clusterprofiler and DESeq2
R
DESeq2
RNAseq
3 days ago by
a.basitkhan1990
▴ 60
0
votes
2
replies
264
views
Regarding reads number for mapping
RNAseq
updated 6 days ago by
GenoMax
146k • written 7 days ago by
SHIRUI
▴ 10
2
votes
2
replies
232
views
Highly skewed distribution of differentially expressed (DE) genes
R
RNAseq
Deseq2
updated 9 days ago by
LChart
4.3k • written 9 days ago by
Maria
• 0
0
votes
0
replies
126
views
News:
RNAseq in non-model organisms (online course)
Bioconductor
Pacbio
RNAseq
11 days ago by
carlopecoraro2
★ 2.6k
0
votes
5
replies
367
views
weird entry in EnhanceVolcano Volcano plot -RNAseq
DEseq2
RNAseq
EnhancedVolcano
updated 13 days ago by
Ram
44k • written 14 days ago by
Yogesh
• 0
0
votes
0
replies
92
views
AS for KEGG analysis
RNAseq
16 days ago by
SHIRUI
▴ 10
9
votes
10
replies
511
views
How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen
rRNA
DESeq2
RNAseq
DGE
updated 10 days ago by
Carlo Yague
8.9k • written 17 days ago by
ev97
▴ 40
1
vote
2
replies
372
views
Illumina RNA-seq: Overrepresented sequences are mostly in the R2 reads, not R1
illumina
rRNA
RNAseq
RNA
updated 20 days ago by
GenoMax
146k • written 20 days ago by
Umberto
▴ 10
0
votes
1
reply
283
views
Aligning to transcriptome with STAR generates error in Salmon sequence length
STAR
Salmon
RNAseq
updated 21 days ago by
Dunois
★ 2.7k • written 21 days ago by
Lena
• 0
2
votes
3
replies
2.0k
views
Weird behaviour - WGCNA hub analysis results in Cytoscape through CytoHubba plugin change every time I run it!
rnaseq
wgcna
cytoscape
hubs
cytohubba
updated 28 days ago by
xanderpico
▴ 580 • written 2.3 years ago by
Raito92
▴ 100
3
votes
3
replies
299
views
Help With Sleuth
Sleuth
RNASeq
updated 4 weeks ago by
dsull
★ 6.9k • written 4 weeks ago by
Rangarajan
• 0
2
votes
4
replies
1.7k
views
generating transcript to gene mapping with unhelpful GFF3 file
salmon
RNAseq
transcriptome
gff3
updated 5 weeks ago by
jayeshkumarsundaram
• 0 • written 3.3 years ago by
thomas.welch
▴ 50
3
votes
8
replies
971
views
Kallisto: to scaledTPM or not to scaledTPM
tximport
kallisto
EdgeR
RNAseq
updated 6 weeks ago by
Gordon Smyth
★ 7.5k • written 7 weeks ago by
IM
• 0
6
votes
8
replies
630
views
High Detection of Duplication in RNAseq dataset
Deduplication
RNAseq
updated 6 weeks ago by
Brian Bushnell
20k • written 7 weeks ago by
karlensberg
• 0
1
vote
2
replies
283
views
Analyzing RNA-seq data with Salmon
quantifying
RNAseq
data
countmatrix
Salmon
9 weeks ago by
Eduardo Oñate
• 0
0
votes
3
replies
388
views
rna-seq heatmap z-score calculation - TPM?
heatmap
rnaseq
updated 9 weeks ago by
ATpoint
85k • written 9 weeks ago by
lyc1ne
• 0
8
votes
6
replies
584
views
Non-existent transcript as a result from Salmon
RNAseq
salmon
9 weeks ago by
Vojtěch
▴ 10
0
votes
0
replies
191
views
Are equal whisker lengths important in an RLE plot?
EDA
plot
RNAseq
EDAseq
RLE
11 weeks ago by
BioinfGuru
★ 2.1k
3
votes
2
replies
370
views
Appending a Poly-A Tail to a Reference Transcriptome
bowtie
RNAseq
ASE
transcriptome
alignment
updated 11 weeks ago by
GenoMax
146k • written 11 weeks ago by
jon.klonowski
▴ 210
0
votes
0
replies
166
views
StringTie Parameters for Yeast
gffcompare
nanopore
stringtie
rnaseq
12 weeks ago by
kyusikkim
▴ 20
0
votes
11
replies
708
views
Why do I have * in my FASTA? g2gtools diploid
g2gtools
RNAseq
FASTA
genome
transcriptome
12 weeks ago by
jon.klonowski
▴ 210
1
vote
3
replies
3.2k
views
Remove column from Seurat metadata
single-cell
transcriptomics
cell-type-annotation
RNAseq
updated 12 weeks ago by
ev97
▴ 40 • written 18 months ago by
gorizwango
▴ 30
4
votes
7
replies
618
views
Unexpected strandness using salmon
salmon
strandness
STAR
RNAseq
DTU
updated 3 months ago by
ATpoint
85k • written 3 months ago by
zea
▴ 10
2
votes
5
replies
402
views
Same sample and reference genome, different number of reads
STARsolo
Single-cell
RNAseq
updated 3 months ago by
rfran010
★ 1.3k • written 3 months ago by
Nicholas
• 0
7
votes
5
replies
1.8k
views
7 follow
How to normalize long-read RNA-seq data for comparison with short-reads
RNAseq
long-reads
normalization
short-reads
updated 3 months ago by
GenoMax
146k • written 21 months ago by
Bernardo
▴ 30
0
votes
0
replies
197
views
activepathways background list problem
integration
atacseq
rnaseq
activepathways
3 months ago by
biology_inform
▴ 50
0
votes
3
replies
406
views
Help with heatmaps
DeSeq2
genecounts
heatmap
RNAseq
updated 3 months ago by
LauferVA
4.5k • written 3 months ago by
rb_99
• 0
1
vote
16
replies
1.1k
views
How to use NCBI annotation instead of Ensembl in analysing Transcriptome from RNAseq data
txdb
Ensembl
NCBI
RNAseq
3 months ago by
Vojtěch
▴ 10
0
votes
1
reply
753
views
Deconvolution of RNAseq (bulk) from skin samples
RNAseq
skin-references
deconvolution
updated 3 months ago by
Wangering Hedgie
• 0 • written 3.0 years ago by
BlueSky
▴ 10
1
vote
1
reply
258
views
DESeq2 sizeFactor for Bacterial RNASeq
normalization
bacteria
rRNA
RNASeq
updated 3 months ago by
swbarnes2
14k • written 3 months ago by
iXuan
• 0
1
vote
16
replies
828
views
Bacterial RNASeq doubts
samtools
bacteria
featureCounts
rnaseq
updated 3 months ago by
GenoMax
146k • written 3 months ago by
Julián
• 0
1
vote
5
replies
511
views
Comparing two RNAseq runs for the same samples
bulk
normalisation
rnaseq
updated 3 months ago by
BioinfGuru
★ 2.1k • written 3 months ago by
fluentin44
▴ 20
0
votes
2
replies
400
views
Problem in RNASeq data analysis
Transcriptomics
RNASeq
4 months ago by
shwetamgr1
▴ 10
0
votes
3
replies
372
views
Changing unknown transcript identifiers in RNASeq data to gene names
RNAseq
updated 4 months ago by
i.sudbery
20k • written 4 months ago by
jasminestaples1
• 0
24
votes
9
replies
679
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (September 2-4 in Munich, Germany)
DNAseq
Workshop
RNAseq
3 months ago by
David Langenberger
11k
1
vote
5
replies
558
views
low Successfully assigned alignments
featureCounts
RNAseq
updated 4 months ago by
Carlo Yague
8.9k • written 4 months ago by
Srujana
▴ 10
0
votes
0
replies
206
views
News:
Online single-cell RNA-seq Analysis Course (Nov 4-8)
RNAseq
Bioconductor
single-cell
4 months ago by
carlopecoraro2
★ 2.6k
2
votes
3
replies
633
views
Creating GCT files
gct
file
GTEx
RNAseq
updated 4 months ago by
Ming Tommy Tang
★ 4.4k • written 4 months ago by
Misk
• 0
3
votes
4
replies
669
views
RSEM getting TPM from STAR alignment
TPM
STAR
RNAseq
RSEM
4 months ago by
Emily
▴ 20
0
votes
1
reply
356
views
Poor alignment post-SortMeRNA (rRNA removal)
STAR
rRNA
RNAseq
SortMeRNA
updated 4 months ago by
andres.firrincieli
3.8k • written 4 months ago by
Fossil
▴ 20
0
votes
0
replies
217
views
Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
miRNASeq
bowtie
RNASeq
miRDeep2
small
4 months ago by
MIKA
• 0
0
votes
1
reply
243
views
full lenght gene amplification from RNA seq data
RNAseq
offtopic
updated 4 months ago by
GenoMax
146k • written 4 months ago by
maryum
• 0
1
vote
0
replies
227
views
Blog:
Long-read single-cell Sequencing
RNASeq
Long-read
single-cell
scRNA-Seq
transcriptomics
5 months ago by
Gabby
▴ 20
0
votes
2
replies
469
views
Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 5 months ago by
GenoMax
146k • written 5 months ago by
Fossil
▴ 20
2
votes
1
reply
415
views
RNAseq coverage vs depth for transcript isoform expression?
RNAseq
updated 5 months ago by
Gordon Smyth
★ 7.5k • written 5 months ago by
marineandriot
• 0
2
votes
3
replies
541
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
4 weeks ago by
bioinfo
▴ 150
0
votes
0
replies
258
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
5 months ago by
carlopecoraro2
★ 2.6k
1
vote
2
replies
756
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 11 weeks ago by
theresia.celine
• 0 • written 10 months ago by
NorbertK
▴ 10
1
vote
3
replies
553
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
5 months ago by
Lada
▴ 30
50 results • Page
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