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50 results • Page
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Showing top results for tag:
ONT
•
reset
0
votes
6
replies
542
views
Understanding bedtools coverage for datasets with in-dels.
ONT
bedtools
mapping
reads
coverage
5 weeks ago by
Shakunthala Natarajan
• 0
0
votes
2
replies
320
views
ONT Improved RCA Barcoded Plasmid Sequencing
ONT
plasmid-sequencing
nanopore
ngs
updated 9 weeks ago by
Ram
44k • written 10 weeks ago by
thewiggler
• 0
0
votes
0
replies
219
views
whatshap ploidy error on female sample
ONT
ploidy
phasing
nanopore
updated 10 weeks ago by
Ram
44k • written 10 weeks ago by
eebloom
▴ 90
3
votes
1
reply
253
views
How to identify fastq source - Illumina or ONT?
ont
illumina
fastq
updated 12 weeks ago by
GenoMax
146k • written 12 weeks ago by
ChillarAnand
▴ 80
1
vote
7
replies
939
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
6 months ago by
eebloom
▴ 90
2
votes
4
replies
605
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
6 months ago by
samuelkalandarov2002
▴ 10
0
votes
0
replies
322
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 6 months ago by
Ram
44k • written 6 months ago by
samuelkalandarov2002
▴ 10
1
vote
4
replies
1.1k
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 6 months ago by
Ram
44k • written 9 months ago by
turcoa1
• 0
2
votes
7
replies
1.4k
views
Removing duplicates
duplicates
ONT
minimap2
updated 6 months ago by
noodle
▴ 590 • written 6 months ago by
quentinperriere
• 0
1
vote
6
replies
690
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 6 months ago by
GenoMax
146k • written 6 months ago by
eebloom
▴ 90
1
vote
0
replies
257
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
5 months ago by
eebloom
▴ 90
0
votes
1
reply
668
views
Clair3 very low F1 INDEL score
ont
clair3
nanopore
wgs
updated 6 months ago by
yussab
▴ 100 • written 2.3 years ago by
Satrio
• 0
0
votes
1
reply
393
views
POD5 files
ONT
updated 6 months ago by
GenoMax
146k • written 6 months ago by
marco.barr
▴ 150
1
vote
2
replies
461
views
read length in structural variant calling
nanopore
SV
QC
ONT
variant
6 months ago by
eebloom
▴ 90
0
votes
2
replies
390
views
ONT direct RNA sequencing
DRS
ONT
updated 7 months ago by
Ram
44k • written 7 months ago by
Karina
• 0
0
votes
2
replies
535
views
comparing VCF files
long-reads
VCF
variants
ONT
nanopore
7 months ago by
eebloom
▴ 90
0
votes
1
reply
374
views
Using multiple reference genomes for alignment in dorado?
dorado
basecall
ONT
alignment
updated 7 months ago by
GenoMax
146k • written 7 months ago by
gideonav
• 0
1
vote
3
replies
813
views
FastQC on nanopore data: high proportion of polyA and polyG. Why ?
fastQC
polyG
ONT
nanopore
polyA
updated 7 months ago by
GenoMax
146k • written 7 months ago by
Matt
• 0
0
votes
0
replies
246
views
Slow Python Script Pulling Metrics from Remora Oxford Nanopore
Nanopore
Remora
Long-Read
ONT
updated 7 months ago by
Ram
44k • written 7 months ago by
turcoa1
• 0
3
votes
5
replies
1.0k
views
somatic variant calling without matched normal in long-reads
variants
cancer
illumina
ONT
nanopore
7 months ago by
eebloom
▴ 90
0
votes
0
replies
348
views
Amplicon analysis from nanopore sequencing
ASV
ONT
amplicon
8 months ago by
H.Hasani
▴ 990
5
votes
7
replies
9.0k
views
Remove adaptaters from ONT reads : An alternative to Porechop ?
minion
promethion
porechop
nanopore
ONT
oxford
updated 8 months ago by
Michael
55k • written 6.0 years ago by
Rox
★ 1.4k
0
votes
5
replies
666
views
HPRC sample information (human Pangenome)
ONT
Pangenome
Nanopore
HPRC
updated 8 months ago by
GenoMax
146k • written 8 months ago by
turcoa1
• 0
0
votes
1
reply
527
views
Extracting complete supplementary alignments for long reads from a bam file
ONT
split
reads
alignment
updated 9 months ago by
Pierre Lindenbaum
164k • written 9 months ago by
aacomeau
• 0
0
votes
0
replies
322
views
ONT long reads and IGV
long-reads
IGV
ONT
updated 6 months ago by
Ram
44k • written 9 months ago by
Kay
• 0
0
votes
10
replies
1.8k
views
ONT Raw Read Sequencing Pipeline
remora
dorado
ONT
Basecall
9 months ago by
turcoa1
• 0
1
vote
9
replies
945
views
Problem with ONT sequencing pipeline. Probably in the Samtools part
bam
samtools
ONT
updated 9 months ago by
GenoMax
146k • written 9 months ago by
Emilio
• 0
0
votes
0
replies
275
views
nanopore data analysis methylation modification
6mA
mCaller
ONT
methylation
9 months ago by
Domi
• 0
0
votes
6
replies
842
views
Best practices for differential expression analysis with low-yield Nanopore/ONT direct cDNA data?
differential-expression
RNA-Seq
ONT
Nanopore
updated 6 months ago by
Ram
44k • written 11 months ago by
tw_140
• 0
0
votes
0
replies
1.1k
views
For people doing high molecular weight DNA sequencing library prep, do you see a steep drop off in the fragment sizes before and after the library pr…
library-prep
sequencing
ont
nanopore
ngs
11 months ago by
Mark
▴ 10
0
votes
2
replies
795
views
Dorado basecall: cryptic error with pod5 subset tool
dorado
Nanopore
ONT
sequencing
pod5
11 months ago by
antoinefelden
▴ 60
1
vote
1
reply
904
views
How to split a folder full of pod5 by phred score?
phred
qc
ont
nanopore
pod5
updated 12 months ago by
GenoMax
146k • written 12 months ago by
compuTE
▴ 140
0
votes
1
reply
653
views
Does Guppy have no --fast_out parameters?
Guppy
fast5
ONT
updated 12 months ago by
Ram
44k • written 12 months ago by
Domi
• 0
1
vote
5
replies
1.8k
views
How to install Guppy from Nanopore Technologies?
Guppy
fast5
ONT
updated 12 months ago by
Ram
44k • written 12 months ago by
Domi
• 0
0
votes
0
replies
311
views
ONT methylation data normalization
Methylation
Sequencing
ONT
Statistics
Normalization
12 months ago by
Rosario
• 0
0
votes
2
replies
786
views
Explanation needed for POD5 files- channel ID's, PromethION run
promethion
dorado
duplex
ont
pod5
updated 13 months ago by
GenoMax
146k • written 13 months ago by
carla.finn
• 0
1
vote
1
reply
518
views
Long read filtering based on reference
Long-read
ONT
updated 13 months ago by
Ram
44k • written 14 months ago by
Link
• 0
0
votes
2
replies
839
views
CUDA error when I run megalodon (2.4.1) and guppy (6.0.1+652ffd1) with GPU support.
Megalodon
ONT
GPU
nanopore
Guppy
updated 15 months ago by
GenoMax
146k • written 15 months ago by
1595952559
• 0
5
votes
2
replies
1.5k
views
Variant caller for Nanopore sequencing data
Genomics
nanopore
sequencing
ont
long-read
updated 15 months ago by
colindaven
6.8k • written 15 months ago by
adarsh_munna
▴ 50
0
votes
1
reply
389
views
Transcriptome long-read sequencing (ONT)
ONT
updated 15 months ago by
Ram
44k • written 15 months ago by
htrcek
• 0
0
votes
0
replies
474
views
Passing parameters to gyppy_duplex pipeline
base-calling
ont
oxford-nanopore
guppy
updated 15 months ago by
Ram
44k • written 15 months ago by
Parham
★ 1.6k
0
votes
0
replies
608
views
No Sequence Segments for secondary alignments in minimap2 while trying to run alignment on ONT data?
minimap2
nanopore
alignment
ont
16 months ago by
Adarsh
• 0
0
votes
0
replies
476
views
Does Minknow in nanopore sequencing trim low qscore bases?
filtering
nanopore
qc
minknow
ont
16 months ago by
grkorompis
• 0
0
votes
0
replies
415
views
Using Guppy with custom DNA Barcodes
basecalling
ont
guppy
16 months ago by
pedrosfriso
• 0
2
votes
2
replies
4.9k
views
Best tool for trimming and filtering nanopore direct RNA sequencing.
minion
nanopore
ont
longread
17 months ago by
kenneditodd
▴ 50
0
votes
0
replies
429
views
simulated metagenomics datasets
metagenomics
simulated
pbsim3
ONT
dataset
18 months ago by
aziznasr1920
▴ 10
1
vote
1
reply
813
views
how to choose an efficient filtering threshold to remove shorter and low quality reads before doing alignment of Nanopore long reads
ONT
long-read
updated 6 months ago by
Ram
44k • written 18 months ago by
Shaghayegh
▴ 20
0
votes
1
reply
976
views
Polishing PacBio or ONT with Illumina
pacbio
polish
ONT
illumina
updated 19 months ago by
mathias.lorieux
• 0 • written 2.9 years ago by
Ric
▴ 440
0
votes
2
replies
622
views
bacterial identification from WGS long reads.
taxa
ont
wgs
updated 19 months ago by
dthorbur
★ 2.5k • written 20 months ago by
ve9
▴ 50
11
votes
7
replies
4.3k
views
7 follow
Assembler for only nanopore data
genomics
Assembly
ONT
Abyss
updated 13 months ago by
GenoMax
146k • written 5.5 years ago by
ringourquia
▴ 20
50 results • Page
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