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Showing top results for tag: Multi-Omics • reset
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Multi OMICS analysis
Multi-variate Multi-OMICS
updated 14 days ago by ★ 4.4k • written 15 days ago by ▴ 60
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253
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News: Machine Learning for Multi-Omics Integration (online course) -January 13-15, 2025
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 19 days ago by 44k • written 20 days ago by ★ 2.6k
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259
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News: Course - Machine Learning for Multi-Omics Integration
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
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0
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271
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TCGAbiolinks: Accessing Matched Samples' Data Across -Omics Hierarchies
TCGAbiolinks mixOmics multi-omics TCGA-BRCA
3 months ago by Desmond • 0
0
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2
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Analysing CITE-seq data where only 4 samples are CITE-seq and rest 11 are scRNA-seq
cite-seq analysis seurat multi-omics single-cell
4 months ago by Sagrika • 0
1
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3
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How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
multi-omics CNV R
updated 4 months ago by ★ 1.2k • written 5 months ago by • 0
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804
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Job: Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
Transcriptomics multi-omics Epigenomics
11 months ago by JP ▴ 30
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5
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1.1k
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Multi omics data integration
multi-omics integration
15 months ago by samin415 • 0
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403
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Correlation matrix for mutation vs other omics types
TCGA multi-omics mutation omics maftools
21 months ago by melissachua90 ▴ 70
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1
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594
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mass-spectrometry and single-cell integration
Mass-Spectrometry multi-omics single-cell ligand-receptor
updated 22 months ago by 27k • written 22 months ago by • 0
1
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1
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773
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open source webserver for multi-omics data store and descriptional visualization
webserver multi-omics open-source
updated 21 months ago by 4.9k • written 22 months ago by ★ 2.2k
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603
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Job: Postdoc Position - FeatureCloud: Federated Machine Learning for Complex Multi-OMICS Data
Biology learning systems SDU medicine multi-OMICS machine Computational
2.3 years ago by info ▴ 80
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748
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Job: Postdoctoral fellow in Bioinformatics Institute (A*STAR, Singapore)
integration sequencing multi-omics Cancer data
2.5 years ago by Xing Yi • 0
0
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360
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Import additional biological information into a PPI network
Multi-omics Network Protein-protein Interactome Multilayer networks analysis Interaction
2.5 years ago by manojmonmax ▴ 90
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1.2k
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Job: PhD position in statistical genetics and computational biology: analysis of multi-omics biological data in novel populations of Brachypodium
statistical biology computational multi-omics Brachypodium genetics Python
2.9 years ago by info ▴ 80
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0
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1.1k
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Job: Postdoctoral Fellowship in Bioinformatics Methods at the Princess Margaret Cancer Centre
Cancer Single-cell Algorithms Multi-omics
updated 21 months ago by 44k • written 2.9 years ago by • 0
0
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0
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711
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Job: Postdoc Fellowship at NICHD : Bayesian Machine Learning for High-dimensional Multi-omics
machine-learning metabolomics microbiome multi-omics causal-inference
2.9 years ago by jamietmorton ▴ 10
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0
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784
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Job: Postdoc in Systems and Synthetic Biology at DTU Biosustain
Synthetic multi-OMICS Systems Biology
3.1 years ago by info ▴ 80
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3
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2.2k
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Job: Open Position- Bioinformatician/biologist with experience in multi-omics data analysis
Dataanalysis BigData Multi-omics NGS
updated 3.2 years ago by ▴ 210 • written 3.2 years ago by • 0
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0
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993
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Job: Bioinformatics Postdoctoral Research Associate
postdoc multi-omics Python Matlab
updated 19 months ago by 44k • written 3.2 years ago by • 0
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2
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944
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I need to visualize the correlation in better way
multi-omics
updated 19 months ago by 44k • written 3.6 years ago by ▴ 80
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930
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Job: Bioinformatician position in multi-omics modeling of renal cancer biology for precision medicine (CEA, France)
cancer-biology multi-omics precision-medicine
updated 15 months ago by 44k • written 3.6 years ago by • 0
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1.5k
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Job: Microbial cell factory engineer at DTU Biosustain
big-data genome multi-OMICS
updated 16 months ago by 44k • written 3.8 years ago by ▴ 80
7
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8
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2.0k
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different IDs conversion to Gene ID/symbol
multi-omics
updated 19 months ago by 44k • written 3.9 years ago by ▴ 80
0
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1
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967
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Where can I find Time Series Multi-Omics human cancer datasets
multi-omics cancer time-series
updated 17 months ago by 44k • written 4.6 years ago by • 0
1
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2.1k
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Job: Research Scientist Bioinformatics at Evotec (Goettingen, Germany)
data-analysis multi-omics RNA-Seq Proteomics
updated 17 months ago by 44k • written 5.1 years ago by ★ 1.4k
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1.4k
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Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
multi-omics data-integration cancer
updated 17 months ago by 44k • written 5.6 years ago by • 0
3
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1
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1.0k
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News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 17 months ago by 44k • written 5.7 years ago by ▴ 60
3
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2
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1.1k
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News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 17 months ago by 44k • written 5.8 years ago by • 0
0
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0
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1.7k
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Job: Research Assistant/Associate (Computational Immunobiology) - University of Cambridge
genetics multi-omics immunology genomics
updated 17 months ago by 44k • written 5.9 years ago by ▴ 50
2
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0
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892
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News: The deadline for Subchallenge 1 of the precisionFDA NCI-CPTAC Mislabeling Challenge is 11/4!
multi-omics challenge
updated 17 months ago by 44k • written 6.0 years ago by ▴ 40
1
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0
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1.5k
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Job: Research Assistant/Associate (Structural Genomics) (Fixed Term) - University of Cambridge
genetics multi-omics statistics genomics
updated 17 months ago by 44k • written 6.1 years ago by ▴ 50
1
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3
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3.1k
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Are there any multi-omics public data sets available online?
multi-omics dataset
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 130
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
Comment: How to determine whether it is 10x data by king • 0
Thank you for your answer, it's very inspiring.
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Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
Comment: Can a read be aligned more than once? by GenoMax 146k
Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
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The choice of test depends on the types of variables involved and the hypothesis you have. But most importantly on the question you want am…
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I'd consider making a [block annotation](https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#block-annotation…
Comment: Comparing GSEA mutant data to wild type by allingt • 0
What do you mean by "significant gene"? How did you perform GSEA and on how did you rank your genes for it? From guesswork I might initiall…
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The DESeq2 manual tells us that the object class of vst() output is a subclass of RangedSummarizedExperiment. I suspect the methods applica…
Comment: WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendr by allingt • 0
Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
Comment: Why does WGCNA use weighted correlation instead of Pearson correlation? by allingt • 0
The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
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any idea, how can I display the labels Pre and POst on the top of the heatmap? I am looking at complexheatmap package as to how they displa…
Comment: How can I determine the p-value of genes within each identified module in WGCNA? by allingt • 0
What p-value do you mean? When and how did you calculate it?
Answer: What is a genomic range that would almost always get decent WGS coverage but is by i.sudbery 20k
What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input by i.sudbery 20k
One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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