Limit : all time
all time today this week this month this year
50 results • Page 1 of 1
Sort: Rank
Rank Views Votes Replies
Showing top results for tag: Loop • reset
4
votes
6
replies
561
views
Protein loops
protein Loop
7 months ago by Curious ▴ 10
2
votes
2
replies
438
views
move fasta and fastq files with the same name folder
for loop
8 months ago by cabraham03 ▴ 30
2
votes
3
replies
908
views
Removing four columns with the same name and position from 38 data.frames in R
Loop remove R columns data.frame
updated 17 months ago by 12k • written 17 months ago by ▴ 30
4
votes
9
replies
1.4k
views
Aligning fastq files using STAR
RNA loop STAR HG Sequencing
23 months ago by kcarey • 0
0
votes
0
replies
378
views
Heteroduplex identification
Heteroduplex loop identification
23 months ago by Roy.anupama11 • 0
0
votes
4
replies
1.0k
views
What is the best time saving way to loop over column elements in pandas DF and replace Nan with specific element from each column?
column loop nohup
updated 23 months ago by 146k • written 23 months ago by • 0
0
votes
1
reply
524
views
Find and replace
sed while loop replace find
updated 24 months ago by 12k • written 24 months ago by ▴ 50
7
votes
5
replies
1.2k
views
For loop to go over all files in a folder to execute after qc
bash loop script
updated 24 months ago by 146k • written 24 months ago by ▴ 10
0
votes
2
replies
955
views
Loop for Slurm in python
loop python slurm
24 months ago by geizetomazetto • 0
0
votes
4
replies
2.4k
views
Change lines in a file within a loop in Python
loop python replace
updated 2.0 years ago by 55k • written 2.1 years ago by ▴ 60
6
votes
7
replies
2.6k
views
STAR alignment in a full directory
STAR loop
updated 2.1 years ago by ★ 4.3k • written 2.9 years ago by ▴ 30
0
votes
2
replies
744
views
renaming files and including folder/directory name in it
rename loop mv
2.1 years ago by arshad1292 ▴ 110
2
votes
1
reply
537
views
Merge/Join one data frame (X) to multiple data frames separately
join loop merge dataframe
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 70
1
vote
3
replies
1.2k
views
Loop to merge csv files
loop csv bash
updated 2.2 years ago by 44k • written 2.3 years ago by ▴ 20
11
votes
13
replies
2.9k
views
Loop for removing the complete missing rows in a n number of groups of a dataframe in R
data-frame proteomics_data loop missing_value R
2.3 years ago by KABILAN ▴ 100
0
votes
0
replies
565
views
Hi-C data analysis (Loop and domain calling)
calling and Hi-C HOMER domain Loop
2.4 years ago by arsala521 ▴ 50
2
votes
2
replies
669
views
I need to perform a sum with values from several outputs of a program
loop
2.4 years ago by pavelasquezv ▴ 50
9
votes
2
replies
822
views
How to achieve dislocation comparison, filtering and fusion of adjacent rows in a data table in R
r matrix comparison filtering loop
2.4 years ago by Chilly ★ 1.3k
19
votes
8
replies
1.7k
views
How to use R's loop to get the part of the aggregate matrix other than the many subset matrices?
aggregate r matrix loop subset
2.4 years ago by Chilly ★ 1.3k
0
votes
7
replies
1.5k
views
Basic python loop for paired fastq files
python loop
updated 2.5 years ago by 44k • written 2.5 years ago by • 0
0
votes
4
replies
1.2k
views
for loop with basename created one merged sam file instead of multiple separate sam files
bash loop bowtie2
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 30
1
vote
5
replies
909
views
Bash loop one liner
liner loop centrifuge bash
updated 2.6 years ago by 6.2k • written 2.6 years ago by ▴ 10
2
votes
4
replies
1.2k
views
Loop through columns to generate PCA from DESeq2 data
pca ggplot2 deseq2 loop
updated 2.6 years ago by ★ 2.0k • written 2.7 years ago by ▴ 20
3
votes
2
replies
1.4k
views
How to apply enrichGO over a list
enrichGO clusterprofiler loop R
2.7 years ago by barix ▴ 20
1
vote
3
replies
810
views
Merge two .fastq files from two different lane
loop NGS merge fastq cat
updated 2.8 years ago by 146k • written 2.8 years ago by ▴ 310
1
vote
10
replies
3.2k
views
How to extract specific lines from a GTF file?
command-line grep loop
updated 2.8 years ago by 8.8k • written 2.8 years ago by ▴ 90
5
votes
11
replies
2.4k
views
How to apply lapply function and loop function at the same time
loop lappy Plink
2.8 years ago by Phylicia ▴ 10
2
votes
3
replies
1.5k
views
sam to bam then delete sam file
samtobam loop
updated 2.9 years ago by 11k • written 2.9 years ago by • 0
0
votes
4
replies
1.3k
views
Bash loop, count for Chromopainter script
script chromopainter bash loop
3.0 years ago by GIACOMO FRANCESCO • 0
2
votes
2
replies
999
views
Snakemake pipeline with Gatk GermlineCNVCaller in Case mode
snakemake gatk cnv loop
3.0 years ago by slowbromain • 0
7
votes
5
replies
2.2k
views
Help understanding "sed" command in a loop
sed loop
updated 3.0 years ago by ★ 4.5k • written 3.0 years ago by ▴ 50
3
votes
3
replies
1.1k
views
Trying to trim last bp of several samples with BBduk at once
parameters BBduk loop bash
updated 3.1 years ago by 146k • written 3.1 years ago by • 0
5
votes
3
replies
1.6k
views
bioawk looping to retrieve fasta sequences by seq ID pattern
regex fasta bioawk loop
updated 3.4 years ago by 85k • written 3.4 years ago by ▴ 20
2
votes
1
reply
1.1k
views
Find and replace the RNAME field in BAM/SAM file
samtools bam loop sed sam
updated 3.5 years ago by 146k • written 3.5 years ago by ▴ 200
2
votes
6
replies
3.5k
views
for loop to filter dataframe based on conditions
r loop filter
3.5 years ago by katinstack • 0
7
votes
6
replies
2.0k
views
nohup with while loop
bash loop SRAtoolkit
3.7 years ago by pt.taklifi ▴ 60
3
votes
3
replies
1.9k
views
Help with parallelization and loop cutadapt
bash cutadapt loop
updated 3.9 years ago by ★ 1.9k • written 3.9 years ago by ▴ 20
1
vote
3
replies
990
views
TSV fie to dataframe R for Anova
tsv dataframe r anova loop
3.9 years ago by kbaitsi • 0
3
votes
3
replies
894
views
Error: object not found - Second loop
loop r
updated 3.9 years ago by ★ 4.8k • written 3.9 years ago by • 0
4
votes
7
replies
1.3k
views
problem with a for loop
linux shell loop
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 350
1
vote
2
replies
1.4k
views
Multiple plots using for loops in R
RNA-Seq R ggplot loop
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 390
7
votes
6
replies
1.4k
views
Looping over list in R
RNA-Seq Loop List R
updated 2.4 years ago by ▴ 10 • written 4.0 years ago by ▴ 390
0
votes
2
replies
4.1k
views
bash loop to python loop for google colabs
python loop kallisto colabs
updated 3.1 years ago by • 0 • written 4.0 years ago by • 0
1
vote
6
replies
1.3k
views
R loop using PLINK keeps stalling
R PLINK Loop
4.0 years ago by keeley.brookes • 0
5
votes
7
replies
1.3k
views
Replace FASTA file headers
fasta FASTA sed loop
updated 4.0 years ago by 21k • written 4.0 years ago by ▴ 200
5
votes
8
replies
4.2k
views
How do I use bash loop to map with Salmon on files in multiple folders
RNA-Seq mapping bash loop
updated 4.3 years ago by ★ 4.5k • written 4.3 years ago by ▴ 80
0
votes
1
reply
578
views
Problem with a function iterating over a matrix in R
R Error Loop Iteration
4.5 years ago by Pia ▴ 10
3
votes
9
replies
3.9k
views
If loop in snakemake
shell snakemake if else loop
4.6 years ago by mrmrwinter ▴ 30
2
votes
4
replies
2.3k
views
For loop to multiple fasta files using TrimAL
trimal loop sequences
updated 4.8 years ago by 146k • written 4.8 years ago by • 0
1
vote
15
replies
1.5k
views
Create txt file in a for loop
bash loop linux
updated 4.8 years ago by ▴ 140 • written 4.8 years ago by ▴ 50
50 results • Page 1 of 1
Recent Votes
RNA-Seq vs DNA-Seq variant calling
C: GSEA error - After pruning, none of the gene sets passed size thresholds
C: What is the definition of "read depth" vs "coverage"? (again...)
Comment: After subsetting a seurat object number of variable features is wrong.
Comment: Wilcoxon test, t-test and negative binomial test for DEG of scRNA-Seq data
Comment: Linux for statistical anaysis
How to integrate GTEx data for variant annotation to understand the tissue specific expression?
Recent Locations • All
United States, 5 minutes ago
Russia, 13 minutes ago
Tehran, 20 minutes ago
Hong Kong, 23 minutes ago
Germany, 40 minutes ago
Bologna, 44 minutes ago
Brazil, 1 hour ago
Recent Awards • All
Teacher to GenoMax 146k
Scholar to Istvan Albert 101k
Popular Question to Aki ▴ 20
Popular Question to from the mountains ▴ 250
Popular Question to Elisabeth Gasteiger ★ 2.4k
Popular Question to tyasird ▴ 10
Popular Question to sarahmanderni ▴ 120
Recent Replies
Answer: Differential binding analysis between different TFs by Ming Tommy Tang ★ 4.5k
have you taken a look at csaw? https://bioconductor.org/books/release/csawBook/ also, I am not sure how you can compare different TFs, the…
Comment: R encountering fatal error and quitting the session by Dunois ★ 2.7k
Have you tried running this in a fresh, clean `R` session with no other (unnecessary) packages and data being loaded into memory? How much …
Comment: PyDeseq2 - InvalidIndexError by Dunois ★ 2.7k
You most likely have duplicates somewhere in there in the column that is currently serving as index to (I am guessing) the counts DataFrmae…
Comment: What to do with sequences without hits after doing blast against a reference tra by Dunois ★ 2.7k
Expand your search by searching these (two) sequences against other sets of sequences. That said, why does it feel like this is an [XY pro…
Comment: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
It's confounded. SCtransform is not doing anything in such situations and hatmony operates on a per-cell embeddings level and not per gene …
Comment: count number of polymorphic sites among samples in vcf by vaellis • 0
I'm wondering if this could work: `bcftools query -f '[%GT]\n' my.vcf.gz | awk '{ gsub(/\./, ""); print }' | grep -Ev '^(.)\1+$' | wc -l` …
Comment: GISTIC 2.0 parameter change not happening by Ram 44k
You should contact the [GenePattern google group](https://groups.google.com/g/genepattern-help) - that's where you stand a higher chance of…
Comment: find marker using scRNAseq data by allingt • 0
What method are you using to identify markers and does it allow for nested designs?
Comment: count number of polymorphic sites among samples in vcf by vaellis • 0
I will look into this. Thank you!
Comment: count number of polymorphic sites among samples in vcf by vaellis • 0
example vcf: ``` CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ind1 ind2 ind3 ind4 chr1 100 . C …
Comment: Snakemake expand(): using a helper function (zip) and imputing wildcards? by Jesse ▴ 850
Not totally sure I'm right about your use case (are those config entries lists of strings, which is why you need to zip them?) but, you can…
Comment: Extract significant DEGs using Seurat FindConservedMarkers and FindAllMarkers by allingt • 0
In general, you should threshold on the p value that corresponds to the maximum FDR you can accept. In practice, for scRNA-seq data, many g…
Comment: T cell subtype annotation by allingt • 0
I guess reference-based annotation is not an option? In my experience, visualising the expression of canonical markers (I don't know if CD4…
Comment: count number of polymorphic sites among samples in vcf by Ram 44k
I'm not sure if this will work, but you could use `bcftools view` with [include expressions](https://samtools.github.io/bcftools/bcftools.h…
Comment: count number of polymorphic sites among samples in vcf by Pierre Lindenbaum 164k
> However, I want to exclude sites where all of the individuals have a single alternative allele (or a mix of either one alternative allele…
Traffic: 886 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6