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50 results • Page
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Showing top results for tag:
HTSeq
•
reset
1
vote
1
reply
200
views
Raw reads or raw counts for meta-analysis
meta-analysis
rna-seq
HTSEQ
STAR
updated 11 days ago by
Ram
44k • written 11 days ago by
a.stef.44
▴ 10
0
votes
8
replies
570
views
HTseq count issue, not aligning to features
htseq
hisat2
rna-seq
28 days ago by
boone5jones
• 0
1
vote
11
replies
739
views
Htseq-count problem with gtf/gff file
htseq
11 weeks ago by
Andrea Chiara
• 0
3
votes
3
replies
546
views
htseq, stringtie, featurecounts all not working on nanopore direct RNA
stringtie
minimap2
htseq
quantification
nanopore
updated 4 months ago by
colindaven
6.8k • written 4 months ago by
CL
• 0
0
votes
1
reply
297
views
sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
htseq
bam
updated 7 months ago by
Ram
44k • written 7 months ago by
RNAseqer
▴ 270
0
votes
1
reply
444
views
Help related to HTSEq usage specific for downstream DEXSeq analysis
Splicing
DEXSeq
HTSeq
updated 9 months ago by
Barry Digby
★ 1.3k • written 9 months ago by
achanda
• 0
0
votes
5
replies
781
views
HTseq reports missing attribute name
htseq
updated 11 months ago by
Istvan Albert
101k • written 11 months ago by
Bjorn
• 0
0
votes
1
reply
439
views
Error with HTseq RNAseq read count
RNAseq
HTseq
updated 11 months ago by
GenoMax
146k • written 11 months ago by
Catalina
• 0
1
vote
9
replies
968
views
Htseq-count reads with missing mate encountered
htseq
htseq-count
11 months ago by
Bjorn
• 0
0
votes
2
replies
507
views
Htseq Count
htseq
htseq-count
11 months ago by
Bjorn
• 0
2
votes
2
replies
536
views
Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq
HTSeq
12 months ago by
SushiRoll
▴ 130
1
vote
4
replies
712
views
htseq-count reports count values for deleted genes
rna-seq
htseq
13 months ago by
kmyers2
▴ 90
2
votes
5
replies
887
views
Help with htseq -count read counts
sam
gtf
RNA-seq
htseq
updated 15 months ago by
rfran010
★ 1.3k • written 15 months ago by
Juan Pablo
• 0
0
votes
1
reply
698
views
problem with downloading htseq
htseq
updated 19 months ago by
GenoMax
146k • written 19 months ago by
Forough
▴ 10
0
votes
2
replies
793
views
HTseq no features
bam
GFF
HTseq
updated 19 months ago by
michael.ante
★ 3.9k • written 20 months ago by
cat910064
• 0
0
votes
5
replies
1.9k
views
HTSeq error processing GFF file
HTSeq
GFF
GTF
updated 21 months ago by
barslmn
★ 2.3k • written 21 months ago by
sansan96
▴ 130
0
votes
14
replies
2.4k
views
Error using HTSEq_count
HTSeq
python
21 months ago by
felipead66
▴ 120
0
votes
2
replies
841
views
Problem to create count file through HTSeq application
HTSeq
RNA-seq
count
HISAT2
22 months ago by
modarzi
▴ 170
0
votes
9
replies
1.5k
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
updated 23 months ago by
swbarnes2
14k • written 23 months ago by
abhay.kanodia
▴ 10
5
votes
16
replies
3.3k
views
How to extract intron counts from total RNA Sequencing?
featurecounts
RNAseq
htseq
STAR
23 months ago by
PK
▴ 130
0
votes
1
reply
622
views
smallRNA profiling using HTSeq error
smallRNAseq
HTseq
updated 24 months ago by
GenoMax
146k • written 24 months ago by
abhay.kanodia
▴ 10
3
votes
0
replies
432
views
miRNA-seq count by "ID" or "Alias" using mirBase mmu.gff3
HTSeq
miRNA
mirBase
2.0 years ago by
Rafael Soler
★ 1.3k
0
votes
3
replies
1.1k
views
RNA-Seq Reads Count
HTSeq
RNA-SEQ
DEG
reads
DESeq2
2.0 years ago by
PBC
▴ 10
0
votes
1
reply
584
views
HTseq error and 0kb output file
htseq
emptyfile
warnings
updated 2.0 years ago by
GenoMax
146k • written 2.0 years ago by
aimanbarki
▴ 20
4
votes
5
replies
3.5k
views
TCGA STAR - Counts, where are estimated counts?
TCGA
HTSeq
TPM
STAR
estimated_counts
updated 2.1 years ago by
Zhenyu Zhang
★ 1.2k • written 2.2 years ago by
beketamas
▴ 10
2
votes
5
replies
1.4k
views
Exon and junctions count per gene
single-cell
STAR
rna
sequence
HTseq
2.1 years ago by
rhonddaskl
• 0
3
votes
4
replies
1.4k
views
How to fix: Error: No module named HTSeq.scripts?
HTSeq
2.1 years ago by
Chris
▴ 340
1
vote
2
replies
628
views
Forward Strand Or Reverse Strand alignment
RNAseq
HTseq
2.1 years ago by
ferran.foscodoner
• 0
1
vote
1
reply
526
views
Determining strandedness of RNAseq samples from count data and understanding counts in sex genes
strandedness
htseq
RNAseq
updated 2.2 years ago by
ATpoint
85k • written 2.2 years ago by
sr41489
• 0
0
votes
1
reply
680
views
A question for using data in ENCODE polyA plus RNA-seq for exon level expression count and never get a normal resultsrmal results
exon
reference
analysis
htseq
genome
ENCODE
updated 2.2 years ago by
i.sudbery
20k • written 2.2 years ago by
pxd
• 0
0
votes
0
replies
483
views
HTSeq-count: proper pairs in bam file
BWA
-count
RNAseq
HTseq
2.5 years ago by
mario_de_manner
▴ 20
0
votes
3
replies
711
views
no change in input and output of htseq readcount
htseq
updated 2.5 years ago by
Ram
44k • written 2.5 years ago by
KMS
• 0
0
votes
1
reply
693
views
Getting Successfully Aligned Percentage for htseq-count output
transcriptomics
htseq
htseq-count
rna-seq
workflow
updated 2.5 years ago by
Matthias Zepper
4.9k • written 2.5 years ago by
nishat04bmb15
• 0
4
votes
4
replies
2.2k
views
HTseq-Count: Long processing time
htseq
linux
updated 2.2 years ago by
Ram
44k • written 2.5 years ago by
Sarah
▴ 10
1
vote
2
replies
737
views
HTseq-count finding single-end alignment after samtools markdup
samtools
rna-seq
htseq
updated 16 months ago by
Ram
44k • written 2.6 years ago by
Cory
▴ 10
4
votes
6
replies
3.5k
views
Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
expression
RNA
HTSeq
updated 2.6 years ago by
Marco Pannone
▴ 810 • written 2.6 years ago by
wathunya.h
• 0
8
votes
9
replies
2.6k
views
htseq-count error
htseq
rnaseq
rna-seq
updated 2.6 years ago by
iraun
6.2k • written 2.6 years ago by
biology_inform
▴ 50
3
votes
11
replies
1.9k
views
Feature count is very low using htseq-count
htseq
bbmap
2.6 years ago by
salmon
▴ 10
0
votes
1
reply
581
views
HT-seq, No feature, Alignment not unique Output
No
feature
HTSeq
read
updated 2.6 years ago by
yhoogstrate
▴ 150 • written 2.6 years ago by
TM
▴ 20
4
votes
2
replies
1.0k
views
Htseq is giving me 0 counts using the GFF3 of miRBase
Counts
GFF3
miRNA
HTSeq
GTF
2.6 years ago by
Rafael Soler
★ 1.3k
0
votes
0
replies
424
views
Value count error in HTSeq-qa
RNA-Seq
HTSeq
Ribo-Seq
updated 2.8 years ago by
GenoMax
146k • written 2.8 years ago by
melatoninixo
▴ 10
0
votes
0
replies
564
views
How to label columns in HTSeq output
RNAseq
HTSeq
counting
read
updated 2.8 years ago by
cpad0112
21k • written 2.8 years ago by
mrs97
• 0
0
votes
1
reply
1.0k
views
Error "start too small" when running htseq-count on a sorted .bam file
htseq-count
htseq
updated 2.9 years ago by
swbarnes2
14k • written 2.9 years ago by
elee228
• 0
3
votes
6
replies
2.0k
views
HTSeq-count : is it same to use .bam file or .sam file?
count
htseq
2.9 years ago by
mujiangxielu
▴ 10
0
votes
0
replies
566
views
How to convert HTSeq raw read counts to FPKMs?
HTSeq
countToFPKM
counts
FPKM
read
3.0 years ago by
s.singh
▴ 70
1
vote
1
reply
982
views
HTSeq - Extracting exon level read coverage of a specific gene
alignment
exon
RNASeq
HTSeq
updated 3.1 years ago by
yhoogstrate
▴ 150 • written 3.1 years ago by
chet
• 0
2
votes
3
replies
1.6k
views
Using HTSeq-count for paired-end data but unsorted by SAMTOOLS
htseq
ngs
3.1 years ago by
ChocoParrot
▴ 20
1
vote
2
replies
1.2k
views
How can I convert ensembl exon ID to gene symbol in a gene count dataframe?
HTseq
scRNAseq
Ensembl
RNAseq
updated 3.1 years ago by
Emily
24k • written 3.1 years ago by
istiaqarif
• 0
0
votes
1
reply
690
views
Running htseq-count to "grab" long non coding gene_id names
lncRNA
htseq
updated 3.2 years ago by
GenoMax
146k • written 3.2 years ago by
dimitrischat
▴ 210
7
votes
1
reply
3.7k
views
HTseq doesn't support Multi-Threading ?
htseq-count
htseq
thread
multithread
count
updated 3.2 years ago by
Michael
55k • written 3.2 years ago by
rlatjsgns129
▴ 20
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