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50 results • Page
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Showing top results for tag:
GO
•
reset
0
votes
0
replies
43
views
Sankey + dot plot
ontology
R
sankey
GO
gene
6 hours ago by
Sofia
• 0
0
votes
0
replies
177
views
Understanding how to analyse VEP files and understand the impact of mutations on biological pathways
REACTOMEPA
SNV
VEP
GO
20 days ago by
namg
• 0
5
votes
3
replies
440
views
blast against Gene Ontology (GO), KEGG, and EuKaryotic Orthologous Group (KOG) databases
KEGG
KOG
blast
GO
updated 28 days ago by
Mensur Dlakic
★ 28k • written 29 days ago by
analyst
▴ 50
0
votes
0
replies
237
views
Substraction of GO terms to the whole ontology
terms
ontology
GO
7 weeks ago by
Francois Piumi
▴ 70
1
vote
1
reply
296
views
Gene Enrichment Analysis
Gene-Ontology
Enrichment
GO
updated 8 weeks ago by
Ram
44k • written 8 weeks ago by
BioGeek
▴ 170
9
votes
1
reply
218
views
How can I find all GO term IDs related to transcription factor?
GO-term
Transcription-Factor
GO
Gene-Ontology
TF
updated 8 weeks ago by
Ram
44k • written 8 weeks ago by
Chilly
★ 1.3k
0
votes
1
reply
192
views
How to get all GO IDs of a specific GO term
GO
updated 8 weeks ago by
GenoMax
145k • written 8 weeks ago by
Tze Jet
• 0
0
votes
1
reply
301
views
Normalized enrichment Score (NES) cut-off
NES
GSEA
analysis
threshold
GO
updated 9 weeks ago by
GenoMax
145k • written 9 weeks ago by
shakyaram079
• 0
0
votes
5
replies
479
views
Pathway analysis for DGEList
KEGG
Pathway_analysis
GO
gene_expression
DGEList
updated 11 weeks ago by
BioinfGuru
★ 2.1k • written 12 weeks ago by
bioinfo1994
• 0
3
votes
7
replies
868
views
GG Sankey plot - plot that does not show any flow between columns
ggplot2
sankey-plot
r
GO
updated 3 months ago by
zx8754
12k • written 4 months ago by
ijarne
▴ 10
7
votes
0
replies
223
views
Tool:
GeneScape: A Python package for gene ontology visualization
ontology
GO
3 months ago by
Istvan Albert
101k
0
votes
0
replies
175
views
reference geome gaf file obsolent GO replacement
gaf
GO
4 months ago by
Nicolas
• 0
0
votes
1
reply
252
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 4 months ago by
marco.barr
▴ 150 • written 4 months ago by
sooni
▴ 20
0
votes
4
replies
453
views
GO analysis: p-value range
GO
R
updated 4 months ago by
Matthias Zepper
4.9k • written 4 months ago by
sooni
▴ 20
0
votes
0
replies
201
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 5 months ago by
Ram
44k • written 5 months ago by
Oscar
▴ 10
0
votes
4
replies
643
views
Perfom a Gene Ontology Analysis from GO terms txt file
RNA-Seq
GO
updated 5 months ago by
Ram
44k • written 5 months ago by
Hamtaro
▴ 50
2
votes
2
replies
462
views
Creating a cytoscape bubble figure
cytoscape
network
GO
5 months ago by
Dave Carlson
★ 1.9k
0
votes
2
replies
485
views
trying to do some GSEA in python
python
GSEA
GO
updated 5 months ago by
Wayne
★ 2.0k • written 6 months ago by
aleksk779
• 0
0
votes
0
replies
177
views
doing some ontology enrichment analysis
GO
6 months ago by
aleksk779
• 0
5
votes
6
replies
729
views
biological meaning /summary for similar sets of GO terms
annotation
GO
updated 6 months ago by
Istvan Albert
101k • written 6 months ago by
lessismore
★ 1.4k
38
votes
26
replies
19k
views
16 follow
GO analysis: DAVID vs GREAT vs GOrilla
RNA-Seq
ChIP-Seq
GO
gene ontology
written 8.6 years ago by
biostart
▴ 370
2
votes
6
replies
895
views
GO and KEGG
GO
bulk-RNA-seq
Rstudio
KEGG
updated 7 months ago by
jv
★ 1.8k • written 7 months ago by
matteo.levorato
• 0
0
votes
3
replies
526
views
GO enrichment plot with dotplot strange axis
enrichment
go
plot
updated 7 months ago by
bk11
★ 2.9k • written 8 months ago by
Picasa
▴ 650
1
vote
2
replies
767
views
How to manage GO terms for metagenomics
metagenome
gene-ontology
GO
updated 8 months ago by
geneontologyhelp
▴ 420 • written 23 months ago by
young_bioinformatician
▴ 240
0
votes
1
reply
550
views
Enrichment dotplot color
KEGG
R
GO
Enrichment
dotplot
updated 9 months ago by
rpolicastro
13k • written 9 months ago by
Grace
• 0
5
votes
6
replies
4.1k
views
How to download all Gene Ontology (GO) IDs with their associated vocabulary?
gene-ontology
GO
updated 9 months ago by
mjsteinbaugh
• 0 • written 20 months ago by
Jimmy
▴ 30
1
vote
3
replies
691
views
GO, KEGG, GSEA analysis with ~5 DEGs
GO
KEGG
updated 9 months ago by
Istvan Albert
101k • written 9 months ago by
foejvs546
▴ 20
3
votes
3
replies
708
views
How to avoid missannotated GO terms?
swissprot
GO
enrichment
updated 9 months ago by
Elisabeth Gasteiger
★ 2.4k • written 9 months ago by
Dr.Animo
▴ 130
2
votes
6
replies
718
views
Feasibility of Enrichment Analysis from RTqPCR results
GO
RT-qPCR
Enrichment-Analysis
updated 7 months ago by
Ram
44k • written 9 months ago by
Javier
• 0
0
votes
3
replies
719
views
GAF files in pangenomics
GO
annotation
updated 9 months ago by
colindaven
6.7k • written 10 months ago by
Pooja
• 0
1
vote
1
reply
588
views
gene set enrichment analysis- by enrichGO
rna-seq
GO
enrichment
updated 10 months ago by
Istvan Albert
101k • written 10 months ago by
CL
• 0
4
votes
4
replies
1.0k
views
Combining GO and KEGG enrichments
Cytoscape
KEGG
network
RNASeq
GO
10 months ago by
David R
▴ 20
0
votes
0
replies
327
views
Errors in Functional Enrichment Analysis with Clusterprofiler
GSCA
R
GO
Enrichment
Clusterprofiler
11 months ago by
Tanjim
• 0
2
votes
3
replies
1.8k
views
GENE ONTOLOGY FOR TOMATO-ITAG4.1 OR 4
BUILD
GO
ITAG4.1
SL4.0
updated 3 months ago by
Hamtaro
▴ 50 • written 23 months ago by
anusha
▴ 10
0
votes
2
replies
501
views
Reaction enrichment analysis
reaction-enrichment
GO
11 months ago by
dalibenam64
• 0
0
votes
1
reply
465
views
GO ENRICHMENT ANALYSIS- DESEQ
GO
updated 12 months ago by
Basti
★ 2.0k • written 12 months ago by
odi
▴ 10
0
votes
1
reply
645
views
Gene enrichment analysis of prokaryotes gene
prokaryotes
GO
enrichment
DEG
updated 12 months ago by
dthorbur
★ 2.4k • written 12 months ago by
Genta
• 0
0
votes
1
reply
418
views
GO analysis after DESeq2
GO
updated 12 months ago by
Ram
44k • written 12 months ago by
odi
▴ 10
0
votes
2
replies
814
views
Gene Ontology - How to do Transcript Ontology?
gene-ontology
GO
transcripts
updated 12 months ago by
Ram
44k • written 12 months ago by
Lakritz the LabRat
• 0
0
votes
3
replies
721
views
Seeking Assistance for Interpreting a Network Representation on String-DB.org
gene-ontology
GO
enrichment
Proteome
stringdb
updated 12 months ago by
rfran010
★ 1.3k • written 12 months ago by
Biomed-jeh
• 0
0
votes
3
replies
796
views
GO annotation in R using library(org.Hs.eg.db)
GO
Bioconductor
12 months ago by
Nana
• 0
0
votes
3
replies
683
views
Assigning GO ids to blast hits
Linux
GO
blast
updated 12 months ago by
jeevii
• 0 • written 12 months ago by
Mousumi Akter
• 0
3
votes
3
replies
947
views
Load MF, CC and BP from org.Hs.eg.db
org.Hs.eg.db
GO
DGE
enrichGO
updated 13 months ago by
Ram
44k • written 13 months ago by
Manuel
▴ 10
0
votes
2
replies
684
views
GO enrichment of DEGs - DeNovo RNAseq
DeNovo
GO
RNA-seq
13 months ago by
Sowmya Pulapet
▴ 70
1
vote
6
replies
1.6k
views
gseGO() --> No gene can be mapped
R
clusterProfiler
GO
Ontology
13 months ago by
juliette
• 0
1
vote
2
replies
623
views
Downstream analysis of DEG for non-model organisms.
Axolotl
KEGG
GO
GSEA
14 months ago by
georgii.vdovin
• 0
2
votes
2
replies
958
views
Extract geneID following GO enrichment analysis
geneID
GO
GO-analysis
15 months ago by
hellokwmin
• 0
0
votes
1
reply
716
views
GSEA and GO Ontology
Ontology
GO
GSEA
updated 15 months ago by
LauferVA
4.4k • written 15 months ago by
shakyaram079
• 0
1
vote
3
replies
1.2k
views
Reorder GO terms using R
enrichment-analysis
GO
15 months ago by
hellokwmin
• 0
1
vote
1
reply
543
views
Plotting GO enrichment DATA
R
GO
enrichment-analysis
updated 15 months ago by
Ram
44k • written 15 months ago by
hellokwmin
• 0
50 results • Page
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Recent Votes
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Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
by
GenoMax
145k
Can you check using `featureCounts` to make sure things look reasonable with alignments? You could also use `salmon` to do transcript quant…
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
by
GenoMax
145k
Since we don't have access to your data we can't comment. Check the integrity of your input data files. Validate the files if you are not s…
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
by
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145k
https://www.biostars.org/u/145859/ : Use `ADD REPLY/ADD COMMENT` to add additional information to existing threads. `ADD YOUR ANSWER` is me…
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145k
Please do not ask questions unrelated to the original post in this thread. Post a new question.
Comment: How to compile Multiz
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I could install multiz from it! Thank you very much. Please help me out with the problem below. I run multiz like below. (myenv) tak…
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
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One of them looks okay, but I don't quite believe it. ```R > table(df$`intermediate_data.OE1_1_.genes.results`==0) FALSE TRUE 21200 2…
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
by
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• 0
It seems that the files that generated the results also have significant issues. Except for one sample, all other samples only have over 20…
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
by
Pallondyle
• 0
Their .fq files all look similar, should I rerun these programs?
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
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145k
> Cannot open intermediate_data/OE_NC_2_.temp/OE_NC_2__alignable_1.fq! It may not exist. Looks like you are missing some files. BTW this …
Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
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• 0
The most torturous thing is that some groups did indeed generate results. ``` ls intermediate_data KO1_1_.stat KO1_3_.isoforms…
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Comment: I have encountered some bugs in transcriptome analysis using STAR and RSEM.
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Thank you, it worked almost after two months of struggle, I nearly deleted everything and reinstalled it, I assume the problem was someth…
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