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Showing top results for tag: GC • reset
0
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248
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computeGCBias outputs
GC bam deepTools GCbias
7 months ago by pablo ▴ 310
6
votes
5
replies
1.2k
views
Calculate GC content for entire chromosome
bam GC assembly bwa-mem
updated 11 months ago by 6.8k • written 11 months ago by • 0
0
votes
0
replies
369
views
Per sequence GC content graph showing two peaks in ChIPseq data analysis
FastQC content ChIPseq Per GC sequence
18 months ago by shashianand15 • 0
1
vote
0
replies
913
views
Lambda GC, genomic inflation and REGENIE
genomic-inflation REGENIE lambda GC
updated 20 months ago by 44k • written 20 months ago by ▴ 20
2
votes
1
reply
477
views
GC content RNA-seq
RNAseq GC
updated 24 months ago by 146k • written 24 months ago by • 0
0
votes
2
replies
622
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G+C of genes
gene Genome GC
2.0 years ago by K1404064 • 0
2
votes
1
reply
1.7k
views
FASTQC Per sequence GC content failed
RNAseq content Human GC
updated 2.1 years ago by 146k • written 2.1 years ago by ▴ 10
2
votes
3
replies
1.9k
views
Reporting results from fastp Read GC content
fastp MultiQC PE sequencing GC
2.4 years ago by salman_96 ▴ 70
6
votes
4
replies
4.1k
views
Bedtools nuc : calculating the GC content in a sliding window
gc bedtools
updated 23 months ago by 44k • written 2.5 years ago by ▴ 10
1
vote
2
replies
871
views
How can I get GC content information by R package rentreze
genome entrez_search GC content R rentreze
updated 2.6 years ago by ★ 28k • written 2.6 years ago by • 0
0
votes
0
replies
453
views
How can I download the GC content of genome by taxid on NCBI?
GC NCBI genome
2.6 years ago by anran04100 • 0
0
votes
3
replies
881
views
About Per base sequence content: Should I cut the former abnormal 10 bp?
sequence GC content Per base fastqc trimming
2.7 years ago by rsunam • 0
3
votes
1
reply
2.1k
views
Bad Per sequence GC content
content reads fastqc checking quality Trimmomatic GC pair-end
updated 3.1 years ago by ★ 18k • written 3.1 years ago by • 0
1
vote
4
replies
2.4k
views
Per sequence GC content still not good after trimming
GC content. trimmomatic.
updated 3.1 years ago by 146k • written 3.1 years ago by • 0
0
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0
replies
1.8k
views
Why are there two peaks in per sequence GC content plot from FastQC report?
distribution WGS sequencing GC Illumina
3.4 years ago by Meng • 0
0
votes
3
replies
1.6k
views
Abnormal GC content in Whole Exome Sequencing Sample after alignment
library WES GC Sequencing FASTQC
updated 3.0 years ago by • 0 • written 3.5 years ago by • 0
2
votes
1
reply
1.3k
views
Filter contig fasta file by GC content
contig gc
updated 3.5 years ago by 146k • written 3.5 years ago by • 0
4
votes
3
replies
2.0k
views
Calculating GC content around a specific genomic location
WGS WES GC genome SNP
updated 3.9 years ago by 4.0k • written 3.9 years ago by ▴ 180
2
votes
4
replies
4.6k
views
How Can I Obtain Gc Content And Also Find Out About The Sense Information From A Bunch Of Sequences
gc short sequence
updated 4.3 years ago by 20 • written 10.8 years ago by ▴ 350
5
votes
10
replies
4.9k
views
How to generate random genomic sequences that are GC- and length-matched to my input sequences?
sequence GC random background
updated 4.3 years ago by ▴ 30 • written 6.6 years ago by ▴ 310
2
votes
1
reply
3.7k
views
Standalone Gc Correction Tools
gc cnv
updated 4.6 years ago by 20 • written 11.4 years ago by ▴ 390
6
votes
2
replies
1.4k
views
GC bias correction for Chip-SEQ
GC ChIP-Seq ngs
updated 5.0 years ago by 85k • written 5.0 years ago by ▴ 20
10
votes
3
replies
12k
views
How To Calculate A Region‘ Gc Content In Reference Genome？？
gc
updated 3.0 years ago by 44k • written 11.5 years ago by ▴ 150
2
votes
4
replies
10k
views
what is gc bias?
gc bias gc bias sequencing mapping
updated 6.2 years ago by 9.0k • written 6.2 years ago by ▴ 60
3
votes
6
replies
3.3k
views
GWAS: how do we know we have the most appropriate model?
GWAS statistics genomic control GC inflation
updated 6.2 years ago by 88k • written 6.2 years ago by ▴ 70
1
vote
5
replies
1.8k
views
GC count calculation of thousnds genes in several region
GC GC COUNT gene calculation
6.5 years ago by Kian ▴ 50
0
votes
1
reply
1.4k
views
Bos taurus gc5 annotation for PennCNV not available or corrupted?
genome gc assembly cow cnv
updated 15 months ago by • 0 • written 6.6 years ago by ▴ 220
4
votes
4
replies
3.0k
views
GC Bias Correction
dna-seq gc
6.6 years ago by finswimmer 16k
0
votes
6
replies
2.7k
views
GC bias between samples tolerance in RNAseq?
RNA-Seq GC bias
7.0 years ago by annen ▴ 30
3
votes
2
replies
2.4k
views
GC content biases in RNA-seq data of A.thaliana
RNA-Seq GC Athaliana mapping
7.1 years ago by rioualen ▴ 750
1
vote
6
replies
4.4k
views
Gc Content In Mate Pairs / Pair-End
biopython paired gc
updated 7.7 years ago by 20 • written 12.7 years ago by ▴ 440
1
vote
3
replies
3.3k
views
Using offsets in edgeR to correct GC content
edger gc linear models R
updated 8.1 years ago by ▴ 40 • written 8.4 years ago by ▴ 270
1
vote
0
replies
1.7k
views
Metagenomics and GC correction
metagenomics gc
8.3 years ago by int11ap1 ▴ 490
44
votes
12
replies
39k
views
6 follow
What Is The Gc-Content Across Different Human Chromosomes?
chromosome gc
updated 8.4 years ago by ★ 2.4k • written 12.8 years ago by ▴ 160
10
votes
6
replies
7.6k
views
RNA Seq: GC Content extra peak
rna-seq fastqc gc
8.5 years ago by firestar ★ 1.6k
7
votes
15
replies
3.7k
views
6 follow
Could you explain the percentage of A, C , G, T in hg19 ?
GC percent hg19
updated 2.3 years ago by 44k • written 8.8 years ago by ★ 2.4k
0
votes
2
replies
3.5k
views
Obtaining length and %GC of genes using Biomart
biomart GC
8.8 years ago by Na Sed ▴ 310
12
votes
8
replies
2.8k
views
6 follow
How else can one quantify a DNA sequence besides GC-content and length?
gc seq genome gene sequence
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 150
5
votes
5
replies
3.7k
views
Count of GC in row, but not from N bases
GC
updated 22 months ago by 44k • written 9.4 years ago by ▴ 260
0
votes
1
reply
3.5k
views
Human Exome GC content
gc exome
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 140
4
votes
1
reply
3.2k
views
GC content of promoters
GC ChIP-Seq genome
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 60
0
votes
1
reply
2.0k
views
Correctin of GC content to No. of reads for NIFTY
GC Reads NIFTY correction
updated 10.5 years ago by 104k • written 10.5 years ago by ▴ 180
4
votes
4
replies
5.0k
views
Hg19 Gc Model
cnv hg19 gc
updated 10.5 years ago by ▴ 10 • written 10.8 years ago by ▴ 10
9
votes
7
replies
7.3k
views
Gc Content From Bam
gc bam awk perl
updated 14 months ago by 44k • written 10.7 years ago by ▴ 180
22
votes
8
replies
11k
views
Compute Binned Gc-Normalized Read Counts From Bam File
gc normalization depth-of-coverage
updated 2.1 years ago by 44k • written 10.7 years ago by ★ 3.1k
0
votes
0
replies
2.0k
views
Gc Content Correction In Apt-Copynumber-Workflow
cnv gc
10.8 years ago by Astoulpho ▴ 10
8
votes
6
replies
7.6k
views
Why Do We Normalize For Gc Counts And Not For At Counts When Computing Gene Expression In Rna-Seq Data
gc counts
updated 11.1 years ago by ★ 1.1k • written 11.1 years ago by • 0
5
votes
1
reply
3.1k
views
Associating Gc Content With Genomic Features
gc statistics p-value
updated 11.4 years ago by 27k • written 11.4 years ago by ▴ 470
2
votes
1
reply
2.4k
views
Coding Sequence Mutation Rate
dna gc
updated 12.3 years ago by 8.3k • written 12.3 years ago by ▴ 410
44
votes
9
replies
35k
views
Calculating Gc Content For All Ccds
next-gen gc gc
updated 12.4 years ago by 12k • written 12.4 years ago by ▴ 410
50 results • Page 1 of 1
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What p-value do you mean? When and how did you calculate it?
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What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
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One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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