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50 results • Page
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Showing top results for tag:
FASTQC
•
reset
3
votes
6
replies
469
views
FastQC and HISAT2
HISAT2
FastQC
RNA-Seq
updated 1 day ago by
GenoMax
145k • written 7 days ago by
Jaber
• 0
0
votes
1
reply
277
views
Shift in GC content between forward and reverse reads in ddRADseq data
ddRAD
sequencing
fastQC
ddRADseq
updated 4 weeks ago by
GenoMax
145k • written 4 weeks ago by
Lemonhope
• 0
2
votes
5
replies
420
views
Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
disturbution
cutadapt
adapter
trimming
fastqc
updated 5 weeks ago by
dsull
★ 6.8k • written 5 weeks ago by
ashaneev07
▴ 30
2
votes
2
replies
273
views
No boxplots on my FastQC report
FastQC
updated 7 weeks ago by
ATpoint
84k • written 7 weeks ago by
sara.vandenbosch
• 0
1
vote
4
replies
352
views
Duplication rate in FastQC report
FastQC
updated 8 weeks ago by
GenoMax
145k • written 8 weeks ago by
Ludmila
• 0
0
votes
4
replies
569
views
PolyA in FastQC results from EM-Seq?
fastqc
wgbs
polya
methylation
emseq
6 weeks ago by
Watermelon
• 0
0
votes
5
replies
441
views
STAR alignment - high % of reads mapped to multiple loci
STAR
fastqc
updated 10 weeks ago by
Ram
44k • written 10 weeks ago by
sophie
• 0
0
votes
6
replies
914
views
Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc
TrimGalore
multiqc
Trimmomatic
11 weeks ago by
George
▴ 10
3
votes
11
replies
638
views
FASTQC: per base n content fail
FASTQC
updated 11 weeks ago by
GenoMax
145k • written 11 weeks ago by
Eddie
• 0
13
votes
8
replies
917
views
Running fastqc in parallel
quality
fastqc
updated 12 weeks ago by
BioinfGuru
★ 2.1k • written 12 weeks ago by
pablo
▴ 310
2
votes
3
replies
430
views
Fastq with 2 presence of adapter sequences
FASTQC
updated 3 months ago by
GenoMax
145k • written 3 months ago by
Armando
• 0
0
votes
1
reply
234
views
Error in "Per Tile Sequence Quality"
Illumina
NOvaSeqx
genome-assembly
FastQC
updated 3 months ago by
Ram
44k • written 3 months ago by
Umer
▴ 110
3
votes
4
replies
555
views
Overrepresented sequence in reverse read
FastQC
Genomics
Trimmomatic
Sequencing
ATAC
3 months ago by
Jaskaran Singh
• 0
1
vote
3
replies
421
views
How to do preprocessing from fastqc
fastqc
scRNA-seq
single-cell
updated 3 months ago by
Ram
44k • written 3 months ago by
Lulu
• 0
5
votes
3
replies
391
views
FastQC report
quality
fastqc
filtration
updated 3 months ago by
a.alnawfal.1992
▴ 350 • written 3 months ago by
analyst
▴ 50
0
votes
1
reply
261
views
Fastqc: kmer-content failed
fastqc
kmer
updated 3 months ago by
Ram
44k • written 3 months ago by
Joseph
• 0
1
vote
2
replies
265
views
Sequece Raw Data QC A/T.G.C Distribution
illumina
sequencing
FastQC
updated 3 months ago by
GenoMax
145k • written 3 months ago by
Umer
▴ 110
0
votes
6
replies
553
views
RNA Seq Paired End High Duplication Rate
fastqc
RNA-seq
FASTQ
updated 4 months ago by
GenoMax
145k • written 4 months ago by
Tara
• 0
1
vote
3
replies
455
views
Trimmomatic running but files containing purged reads are empty
fastqc
fastq
trimmomatic
updated 4 months ago by
GenoMax
145k • written 4 months ago by
Wilber0x
▴ 50
5
votes
3
replies
495
views
FastQC interpretation - 16S sequencing
interpretation
amplicon
Fastqc
16S
updated 4 months ago by
GenoMax
145k • written 4 months ago by
Christopher
▴ 10
0
votes
3
replies
532
views
Snakemake wrapper issue
fastqc
snakemake
updated 4 months ago by
Wei-Chen Pan
• 0 • written 6 months ago by
Matvii Mykhailichenko
• 0
3
votes
7
replies
658
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
5 months ago by
Sergio A.S.
• 0
0
votes
4
replies
801
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
5 months ago by
Kai Xin
• 0
2
votes
4
replies
658
views
Per Base Sequence Content - continuous raise of G%
fastqc
updated 5 months ago by
GenoMax
145k • written 5 months ago by
pl.terzian
• 0
2
votes
2
replies
589
views
What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc
NGS
5 months ago by
octpus616
▴ 110
2
votes
2
replies
427
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 6 months ago by
dsull
★ 6.8k • written 6 months ago by
ev97
▴ 30
0
votes
2
replies
460
views
Using nextflow for performing quality control and trimming of reads
quality
fastqc
nextflow
trimmomatic
updated 6 months ago by
dthorbur
★ 2.4k • written 6 months ago by
nithya
• 0
4
votes
9
replies
1.6k
views
Error in openning FastQC
fastqc
igv
updated 6 months ago by
GenoMax
145k • written 13 months ago by
huynhthienphai
• 0
2
votes
3
replies
473
views
Read length distribution of whole genome sequnces of human
fastq
read
fastqc
6 months ago by
Yellapu
• 0
0
votes
3
replies
500
views
Reformatting Merged and Unmerged Paired-End Files
illumina
fastp
fastqc
bbmap
updated 6 months ago by
GenoMax
145k • written 6 months ago by
young_bioinformatician
▴ 240
1
vote
3
replies
737
views
FastQC on nanopore data: high proportion of polyA and polyG. Why ?
fastQC
polyG
ONT
nanopore
polyA
updated 6 months ago by
GenoMax
145k • written 6 months ago by
Matt
• 0
0
votes
1
reply
459
views
Sequence Duplication Levels in targeted sequencing
fastqc
pcr
sequencing
updated 6 months ago by
Brian Bushnell
20k • written 6 months ago by
Shaghayegh
▴ 20
0
votes
6
replies
618
views
Contamination in my FASTQC files
Fastqc
bowtie2
6 months ago by
carlosgonzalezcruz327
▴ 20
0
votes
2
replies
390
views
Why does Phred+ encoding changes after trimming fastq files??
fastqc
fastq
phred
quality
trimming
updated 7 months ago by
GenoMax
145k • written 7 months ago by
Bikal
• 0
0
votes
3
replies
657
views
Increasing per base G content in QC sequencing files
FastQC
GC-content
QC
NovaSeq
updated 7 months ago by
GenoMax
145k • written 7 months ago by
robertsr
• 0
3
votes
8
replies
848
views
Adapter Removing
FastQC
updated 7 months ago by
a.alnawfal.1992
▴ 350 • written 7 months ago by
daffodil
▴ 10
1
vote
2
replies
493
views
Problem interpreting 'Per base sequence quality' report
galaxy
fastqc
8 months ago by
Sanjukta
• 0
1
vote
3
replies
513
views
What do you usually use for QC using DNBseq?
DNBseq
fastqc
qc
Illumina
RNA-seq
updated 8 months ago by
GenoMax
145k • written 8 months ago by
ev97
▴ 30
1
vote
4
replies
508
views
MiSeq Fastqc - Drop in the first position
Amplicon
Sequencing
fastqc
MiSeq
8 months ago by
andrebolerbarros
• 0
2
votes
1
reply
375
views
How to interpret Per sequence GC content in FastQC for ChIP-seq data?
FastQC
ChIP-seq
updated 8 months ago by
ATpoint
84k • written 8 months ago by
Logan
• 0
3
votes
12
replies
1.3k
views
why 99% reads failed to align in mir-seq analysis?
Fastqc
bowtie1
miRNA-seq
alignment
differential-expression-analysis
8 months ago by
mohammadhassanj
▴ 260
3
votes
4
replies
709
views
Is mir-seq reads quality good (Fastqc report) for DE analysis?
transcriptome
Fastqc
miRNA-seq
differential-expression-analysis
RNA-seq
updated 9 months ago by
GenoMax
145k • written 9 months ago by
mohammadhassanj
▴ 260
0
votes
2
replies
641
views
Overrepresented Sequences persistence
trimmomatic
Fastqc
trim_galore
9 months ago by
Luna
• 0
6
votes
3
replies
572
views
FastQC report
Fastqc
9 months ago by
martab233
▴ 10
4
votes
5
replies
764
views
FastQC without yellow box
fastqc
updated 10 months ago by
Ram
44k • written 10 months ago by
lobelino
▴ 10
1
vote
1
reply
478
views
Process Truncated fastq file
fastqc
fastq
updated 10 months ago by
GenoMax
145k • written 10 months ago by
waqaskhokhar999
▴ 160
10
votes
12
replies
2.2k
views
How to download FASTQ files from the European Nucleotide Archive (ENA) to use them with FastQC etc..
ENA
fastq
R
FastQC
python
updated 4 months ago by
psm
▴ 130 • written 10 months ago by
sil_bioinfo
▴ 50
2
votes
3
replies
683
views
Are truseq adapter sequences picked up by FASTQC?
fastqc
truseq
updated 10 months ago by
GenoMax
145k • written 10 months ago by
bioinfo
▴ 150
0
votes
3
replies
520
views
overrepresented sequences in fastqc
fastqc
updated 11 months ago by
Ram
44k • written 11 months ago by
lonekaisar72
• 0
0
votes
2
replies
465
views
I'm doing RNA seq but the quality control sequence GC contens shape looks weird...
RNAseq
fastqc
GCcontents
Riunx
updated 11 months ago by
jared.andrews07
★ 17k • written 11 months ago by
Kaia
▴ 10
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