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News: Machine Learning for Multi-Omics Integration (online course) -January 13-15, 2025
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 19 days ago by 44k • written 20 days ago by ★ 2.6k
1
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0
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259
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News: Course - Machine Learning for Multi-Omics Integration
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
0
votes
0
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237
views
News: Course: Introduction to Deep Learning
Deep-Learning Machine-Learning Python Convolutional-Neural-Network
5 weeks ago by carlopecoraro2 ★ 2.6k
1
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0
replies
249
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News: "Introduction to Deep Learning for Biologists" - Online Course (30 Sep - 4 Oct 2024)
Deep-Learning Machine-Learning Python CNN
updated 4 months ago by 44k • written 4 months ago by ★ 2.6k
0
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0
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246
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News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 5 months ago by 44k • written 5 months ago by ★ 2.6k
1
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0
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466
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Job: Researcher/Postdoc to enhance computational resources for regulatory genomics with deep learning
deep-learning
updated 9 months ago by 44k • written 9 months ago by ▴ 910
0
votes
2
replies
581
views
regression
machine-learning regression deep-learning
updated 10 months ago by ★ 28k • written 10 months ago by • 0
1
vote
0
replies
550
views
Job: Postdoctoral Fellow/Researcher in Computational Biology & Gene Regulation, Norway
deep-learning
updated 11 months ago by 44k • written 11 months ago by ▴ 910
0
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0
replies
414
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 14 months ago by 44k • written 14 months ago by ★ 2.6k
0
votes
2
replies
881
views
Job: Looking for people with few years of experience
deep-learning
updated 15 months ago by 44k • written 15 months ago by • 0
0
votes
1
reply
735
views
Job: Postdoc in Enzyme Engineering for Machine/Deep Learning – DTU Biosustain
Deep-Learning Postdoc Enzyme-Engineering
updated 16 months ago by 44k • written 16 months ago by ▴ 80
1
vote
0
replies
608
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 16 months ago by 44k • written 16 months ago by ★ 2.6k
0
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0
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544
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 15 months ago by 44k • written 17 months ago by ★ 2.6k
0
votes
0
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983
views
Job: Postdoctoral Research Associate in Computational Biology @ University of Edinburgh (UK)
deep-learning computational-biology machine-learning protein-engineering
updated 2.4 years ago by 44k • written 2.4 years ago by ▴ 10
0
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0
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635
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Job: Postdoctoral Position of Bioinformatics and Computational Genomics at Northwestern University
Postdoc Deep-Learning
updated 21 months ago by 44k • written 2.6 years ago by • 0
2
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3
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1.2k
views
Which to learn: TensorFlow or PyTorch?
PyTorch machine-learning TensorFlow deep-learning
2.6 years ago by John Ma ▴ 310
0
votes
0
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878
views
Job: PhD Student Needed for Machine Learning (Deep Learning and Classical) in Molecular Biology
metagenomics microbiome deep-learning
updated 21 months ago by 44k • written 3.1 years ago by • 0
0
votes
0
replies
770
views
Tool: IPC 2.0: prediction of isoelectric point and pKa dissociation constants
deep-learning isoelectric-point 2D-PAGE pKa
updated 16 months ago by 44k • written 3.4 years ago by • 0
0
votes
0
replies
761
views
News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 21 months ago by 44k • written 3.6 years ago by ★ 2.6k
0
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0
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1.1k
views
Job: PhD Position: Bioinformatics/Computational Systems Biology, The University of Memphis
deep-learning R RNA-Seq Python biomarker
updated 16 months ago by 44k • written 3.9 years ago by ▴ 10
0
votes
2
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1.2k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 16 months ago by 44k • written 4.3 years ago by ★ 2.6k
0
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0
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1.4k
views
Job: PhD Position: Computational Systems Biology, The University of Memphis
deep-learning networks RNA-Seq single-cell
updated 16 months ago by 44k • written 4.2 years ago by ▴ 10
0
votes
0
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1.3k
views
Job: Postdoctoral Position in computational drug discovery, S.Korea, Jeojnu, Chonbuk National University
Deep-Learning AI Drug-Discovery
updated 16 months ago by 44k • written 4.2 years ago by • 0
0
votes
0
replies
719
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 17 months ago by 44k • written 4.4 years ago by ★ 2.6k
2
votes
0
replies
719
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 17 months ago by 44k • written 4.4 years ago by ★ 2.6k
0
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0
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661
views
Deep Learning in Omics Technologies and Drug Discovery
RNA-Seq next-gen sequence deep-learning omics
4.5 years ago by oludhe ▴ 90
2
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0
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626
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 17 months ago by 44k • written 4.5 years ago by ★ 2.6k
0
votes
0
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1.1k
views
Job: PhD Position: Computational Systems Biology, The University of Memphis
Deep-Learning Stochastic RNA-Seq Single-Cell
updated 17 months ago by 44k • written 4.8 years ago by ▴ 10
0
votes
1
reply
1.9k
views
Job: looking for internship in Machine Learning (Deep learning ), Bioinformatics, Data science ..
deep-learning genomic
updated 17 months ago by 44k • written 4.8 years ago by • 0
0
votes
0
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1.7k
views
Job: Computational Genomics postdoc at NCBI, NIH. Bethesda, MD, USA.
deep-learning genomics
updated 17 months ago by 44k • written 5.0 years ago by ▴ 140
0
votes
3
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1.3k
views
How to use list of numpy arrays to train ML algorithm?
python deep-learning machine-learning
5.1 years ago by minuzzitiago • 0
0
votes
0
replies
1.7k
views
Tool: DMPfold: de novo protein structure prediction
deep-learning protein protein-structure
updated 16 months ago by 44k • written 5.1 years ago by ▴ 390
2
votes
2
replies
1.0k
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 17 months ago by 44k • written 5.5 years ago by ★ 2.6k
0
votes
0
replies
1.9k
views
Job: Postdoctoral Researcher in Bioinformatics, Machine Learning in Qatar Foundation
deep-learning machine-learning
updated 17 months ago by 44k • written 5.8 years ago by • 0
0
votes
0
replies
948
views
News: Have you used deep learning in your research? If so, contribute to the Ten Simple Rules for Deep Learning in Biology paper!
deep-learning machine-learning
updated 17 months ago by 44k • written 6.0 years ago by ▴ 50
3
votes
5
replies
1.6k
views
Forum: Cooperation for scientific project (python, deep learning, image recognition, histological images)
deep-learning python image-recognition
updated 17 months ago by 44k • written 6.0 years ago by ▴ 40
0
votes
0
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1.4k
views
Job: Bioinformatician or Image Analyst Senior Position (Prague)
bioinformatician deep-learning metabolomics
updated 17 months ago by 44k • written 6.6 years ago by • 0
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 17 months ago by 44k • written 6.9 years ago by ★ 1.2k
46
votes
16
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6.2k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 17 months ago by 44k • written 6.9 years ago by ▴ 990
0
votes
0
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1.8k
views
Job: Bioinformatics-Principal Investigator at IRIC
biological-networks deep-learning algorithms
updated 17 months ago by 44k • written 7.0 years ago by • 0
0
votes
0
replies
2.1k
views
Job: NLP and Deep Learning, Healx, Cambridge UK
text-mining deep-learning NLP machine-learning
updated 17 months ago by 44k • written 7.0 years ago by ▴ 410
25
votes
3
replies
7.5k
views
Bioinformatics + Deep Learning
deep-learning machine-learning
updated 19 months ago by 44k • written 8.8 years ago by ▴ 50
42 results • Page 1 of 1
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Comment: Finding Differential Phosphosites in TMT Phosphoproteomics Data
Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How?
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
A: How do I ask a question on Biostars?
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
Comment: How to determine whether it is 10x data by king • 0
Thank you for your answer, it's very inspiring.
Comment: Inquiry about depth of coverage and copy number variation by Chen • 0
Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
Comment: Can a read be aligned more than once? by GenoMax 146k
Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
Comment: Statistical test to be used for dataset by allingt • 0
The choice of test depends on the types of variables involved and the hypothesis you have. But most importantly on the question you want am…
Comment: dittoHeatmap; adding column labels on the heatmap by jared.andrews07 ★ 18k
I'd consider making a [block annotation](https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#block-annotation…
Comment: Comparing GSEA mutant data to wild type by allingt • 0
What do you mean by "significant gene"? How did you perform GSEA and on how did you rank your genes for it? From guesswork I might initiall…
Comment: Genes of Interest in a Multi-Tissue Analysis by allingt • 0
The DESeq2 manual tells us that the object class of vst() output is a subclass of RangedSummarizedExperiment. I suspect the methods applica…
Comment: WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendr by allingt • 0
Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
Comment: Why does WGCNA use weighted correlation instead of Pearson correlation? by allingt • 0
The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
Comment: dittoHeatmap; adding column labels on the heatmap by Varun Gupta ★ 1.3k
any idea, how can I display the labels Pre and POst on the top of the heatmap? I am looking at complexheatmap package as to how they displa…
Comment: How can I determine the p-value of genes within each identified module in WGCNA? by allingt • 0
What p-value do you mean? When and how did you calculate it?
Answer: What is a genomic range that would almost always get decent WGS coverage but is by i.sudbery 20k
What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input by i.sudbery 20k
One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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