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50 results • Page
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Showing top results for tag:
DeNovo
•
reset
1
vote
6
replies
803
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
5 months ago by
Umer
▴ 120
0
votes
0
replies
217
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 5 months ago by
Ram
44k • written 5 months ago by
mathavanbioinfo
▴ 80
0
votes
0
replies
224
views
MIRA runs yielding different assemblies with same input data and parameters
MIRA
replication
denovo
assembly
7 months ago by
btc347
• 0
1
vote
10
replies
1.0k
views
Denovo transcriptome assembly
Denovo
assembly
transcriptome
8 months ago by
prs
▴ 20
0
votes
0
replies
371
views
Issues while running abundance_estimates_to_matrix.pl
RSEM
Denovo
RNA-seq
abundance-estimate
12 months ago by
Foad
▴ 10
3
votes
7
replies
1.2k
views
Adapters finder
minion
denovo
adapters
updated 12 months ago by
GenoMax
146k • written 13 months ago by
akis
• 0
0
votes
0
replies
496
views
Running Funannotate on Fungal Genome
funannotate
assembly
genomeassembly
denovo
annotation
13 months ago by
Umer
▴ 120
0
votes
2
replies
706
views
GO enrichment of DEGs - DeNovo RNAseq
DeNovo
GO
RNA-seq
14 months ago by
Sowmya Pulapet
▴ 70
0
votes
2
replies
591
views
Denovo variants
denovo
gvcf
trio
updated 15 months ago by
luffy
▴ 130 • written 15 months ago by
shivangi.agarwal800
▴ 120
13
votes
14
replies
2.6k
views
Pan genome based assembly
denovo
ngs
updated 16 months ago by
LauferVA
4.5k • written 18 months ago by
bioinfo223
▴ 10
0
votes
1
reply
791
views
Aggregate isoforms to gene level after de novo transcriptome assembly.
rnaSPAdes
denovo
isoforms
oases
RNAseq
updated 18 months ago by
wouter.makkinje
• 0 • written 3.2 years ago by
Twitty
▴ 30
0
votes
13
replies
1.9k
views
Use bcftools isec to find denovo mutations
mutations
denovo
updated 20 months ago by
Ram
44k • written 20 months ago by
anasjamshed
▴ 140
0
votes
0
replies
388
views
More up-regulated genes annotate to known GO/KEGG than down-regulated genes
denovo
edgeR
limma
trinotate
trinity
20 months ago by
bioinfo_cat
▴ 20
0
votes
0
replies
549
views
TransDecoder output row names different than Trinity.fasta
transdecoder
denovo
trinotate
trinity
noncoding
22 months ago by
bioinfo_cat
▴ 20
1
vote
3
replies
808
views
How to filter variants by percentage of supported reads
filtering
snp
denovo
varscan
updated 23 months ago by
Pierre Lindenbaum
164k • written 23 months ago by
Shin Taguchi
▴ 40
0
votes
4
replies
868
views
Filtration to detect de novo SNVs in trio data
denovo
filtering
trio
SNV
varscan
23 months ago by
Shin Taguchi
▴ 40
6
votes
4
replies
962
views
Detecting de novo SNV with vcftools
SNPs
denovo
WGS
SNV
vcftools
2.1 years ago by
Shin Taguchi
▴ 40
0
votes
6
replies
1.3k
views
How to detect de novo variants with trio-data
WGS
trio
denovo
variants
2.1 years ago by
Shin Taguchi
▴ 40
0
votes
3
replies
948
views
Automate fasta sequence ordering based on reference
reference
denovo
assembly
contigs
updated 2.3 years ago by
colindaven
6.8k • written 2.3 years ago by
ThePresident
▴ 180
5
votes
5
replies
1.1k
views
Filtered reads from assembly and raw reads?
sequencing
denovo
assembly
updated 2.3 years ago by
GenoMax
146k • written 2.3 years ago by
el97004
▴ 80
1
vote
3
replies
1.3k
views
Metagenomic Binning: before or after denovo assembly?
denovo
metagenomic
assembly
binning
updated 2.3 years ago by
Mensur Dlakic
★ 28k • written 2.3 years ago by
gatheringdusthere
▴ 20
0
votes
0
replies
411
views
Help with mounting VCF file parameters adenovo
denovo
stacks
snp
vcf
asembly
2.4 years ago by
Pamella
• 0
0
votes
0
replies
381
views
How can calculate number of assembly clusters in the assembled transcriptome by trinity tool?
trinity
denovo
assembly
transcriptome
2.4 years ago by
Ahmad
▴ 10
0
votes
2
replies
721
views
Correct de novo assembly workflow and mapping
denovo
nanopore
assembly
mapping
updated 2.5 years ago by
samuel.a.odonnell
▴ 580 • written 2.5 years ago by
schulpen_91
▴ 30
1
vote
1
reply
532
views
Impact of ambiguous sequences during denovo transcriptome assembly on downstream rna-seq analysis
transcriptome
assembly
rna-seq
soapdenovo-trans
denovo
updated 2.6 years ago by
Dunois
★ 2.7k • written 2.6 years ago by
cakes0976
• 0
0
votes
0
replies
887
views
HOMER and .fa files error
motif
fasta
denovo
HOMER
updated 19 months ago by
Ram
44k • written 2.8 years ago by
c.eskiw
▴ 10
0
votes
0
replies
548
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript
salmon
denovo
assembly
updated 2.9 years ago by
ATpoint
85k • written 2.9 years ago by
mathavanbioinfo
▴ 80
2
votes
6
replies
1.8k
views
De novo assembly of mRNA-seq has many transcripts binding to introns or genome parts (not protein coding genes)
transcriptomics
RNA-seq
denovo
trinity
transdecodr
updated 2.9 years ago by
i.sudbery
20k • written 2.9 years ago by
Alessandra
• 0
1
vote
2
replies
1.0k
views
Trinity Statistic
perl
denovo
stat
Trinity
cluster
3.1 years ago by
Princy
▴ 60
4
votes
1
reply
1.2k
views
Trio de novo analyses
WGS
Trio
denovo
updated 3.2 years ago by
ognjen011
▴ 290 • written 3.2 years ago by
jan
▴ 170
1
vote
0
replies
683
views
Fisher exact test for transcription factor binding motif enrichment analysis
motif
p-value
denovo
R
3.2 years ago by
Rana Rehan
▴ 10
3
votes
2
replies
1.2k
views
problem with Trinity command run in denovo transcriptome assembly
analysis
trinity
transcriptome
denovo
3.2 years ago by
Aliviya
• 0
0
votes
1
reply
1.3k
views
reference-guided denovo assembly
next-gen
denovo
stringTie
Assembly
genome
assembl
reference-guided
updated 3.3 years ago by
GenoMax
146k • written 3.3 years ago by
askari.arezou94
▴ 30
3
votes
4
replies
1.2k
views
DENOVO ASSEMBLY
assembly
NGS
Assembly
Denovo
updated 3.3 years ago by
Carambakaracho
★ 3.3k • written 3.3 years ago by
askari.arezou94
▴ 30
0
votes
2
replies
706
views
De Novo Assembly from Oligos
assembly
denovo
updated 3.4 years ago by
liorglic
★ 1.4k • written 3.4 years ago by
Kenneth
• 0
2
votes
2
replies
1.1k
views
How to convert ONT longread or illumina fastq to fasta file
denovo
assembly
genome
updated 3.4 years ago by
Mensur Dlakic
★ 28k • written 3.4 years ago by
K
▴ 10
0
votes
0
replies
400
views
Selective sweep for scaffold level reference genome
positiveselection
denovo
selectivesweep
scaffold
3.5 years ago by
Mel Kile
• 0
9
votes
9
replies
2.2k
views
RNA-seq de novo assembly alignment quality assessment
trinity
rnaseq
denovo
assembly
3.5 years ago by
sarahmanderni
▴ 120
0
votes
4
replies
1.9k
views
Help with salmon quantification of samples with de novo transcriptome
salmon
denovo
tximport
updated 3.6 years ago by
ponganta
▴ 590 • written 3.6 years ago by
codyas
• 0
0
votes
1
reply
1.3k
views
Stringtie de novo VS reference guided (-G)
reference-guided
denovo
stringtie
RNA-seq
updated 3.6 years ago by
Istvan Albert
101k • written 3.6 years ago by
vasanthmandla
• 0
1
vote
5
replies
1.4k
views
De novo alignement with smrttools
denovo
alignment
smrttools
3.8 years ago by
pablo
▴ 310
2
votes
4
replies
1.1k
views
How to call denovo variants from multiple trios cohort?
trio
denovo
gatk
germline
updated 3.8 years ago by
Pierre Lindenbaum
164k • written 3.8 years ago by
DareDevil
★ 4.3k
16
votes
15
replies
3.2k
views
How to call denovo and rare variants from a trios cohort?
gatk
gvcf
trio
denovo
variants
updated 3.9 years ago by
Jeremy Leipzig
22k • written 3.9 years ago by
DareDevil
★ 4.3k
0
votes
3
replies
1.0k
views
denovo assembly using soap denovo
gene
denovo
assembly
next-gen
Assembly
4.0 years ago by
a4appy23
▴ 50
5
votes
3
replies
1.3k
views
Using Trinity for DGE - how to input study design
trinityrnaseq
trinity
denovo
assembly
updated 4.1 years ago by
Biostar
20 • written 4.2 years ago by
hydra_questions
▴ 30
0
votes
0
replies
568
views
Denovo transcriptomics quantification
RNA-Seq
quantification
denovo
4.1 years ago by
mr.shubhamvermaji
• 0
0
votes
6
replies
1.3k
views
Cleaning/filtering RNA seq reads from novel species
RNA-Seq
sequencing
Assembly
denovo
updated 4.1 years ago by
Biostar
20 • written 4.2 years ago by
Dunois
★ 2.7k
3
votes
6
replies
1.9k
views
6 follow
Comparing SPAdes assemblies to each other?
DeNovo
SPAdes
updated 4.3 years ago by
h.mon
35k • written 6.0 years ago by
laurenkleine18
▴ 20
1
vote
6
replies
1.1k
views
Assembly quality analysis
assembly
denovo
genome
4.5 years ago by
tothepoint
▴ 930
0
votes
0
replies
1.0k
views
VCF files never get annotated with PG tag for CalculateGenotypePosteriors
GATK
CalculateGenotypePosteriors
denovo
Genotype
updated 4.6 years ago by
Biostar
20 • written 4.8 years ago by
lait
▴ 180
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