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50 results • Page
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Showing top results for tag:
Dada2
•
reset
1
vote
2
replies
357
views
Track file for the DADA2 pipelne
microbiome-analysis
metagenomics
dada2
16s-amplicon
7 days ago by
naveedhasan2000
• 0
0
votes
0
replies
171
views
Program to demultiplex before to use DADA2
DADA2
demultiplex
metabarcoding
9 days ago by
domingues.pesca
• 0
0
votes
0
replies
182
views
Automated analysis of amplicon sequence datasets from multiple FASTQ files
DADA2
AMPLICON
OTU
ASV
3 months ago by
Bio_12
• 0
0
votes
1
reply
353
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 4 months ago by
Ram
44k • written 5 months ago by
Valentina
• 0
3
votes
8
replies
1.0k
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 4 months ago by
Chris Dean
▴ 410 • written 5 months ago by
sovrappensiero
▴ 100
5
votes
5
replies
564
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
updated 5 months ago by
atharvakarkare14
▴ 40 • written 5 months ago by
Begonia_pavonina
▴ 190
0
votes
0
replies
308
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
5 months ago by
Ali
• 0
0
votes
0
replies
205
views
Confused about the results of a function in dada2 pipeline sample inference step
Microbiome
R
dada2
5 months ago by
Mohamed Samir
▴ 30
1
vote
5
replies
633
views
Need information on how filterAndTrim function from the DADA2 pipeline was developed
filterAndTrim
dada2
updated 5 months ago by
GenoMax
145k • written 5 months ago by
George
• 0
0
votes
0
replies
250
views
DADA2 truncLen value
metabarcoding
phyloseq
DADA2
illumina
6 months ago by
Bioinfo
▴ 20
1
vote
3
replies
814
views
Formatting issues using DADA2 with the database EukRIbo
DADA2
Silva
fasta
metabarcoding
EukRibo
7 months ago by
Begonia_pavonina
▴ 190
3
votes
1
reply
556
views
Using DADA2 for finding viral sequence variants
RNASeq
Amplicon
dada2
Variant
updated 11 months ago by
antonioggsousa
3.2k • written 11 months ago by
Saran
▴ 50
0
votes
3
replies
1.0k
views
Phyloseq and ASV names between datasets
dada2
phyloseq
16S
asv
updated 11 months ago by
antonioggsousa
3.2k • written 11 months ago by
pablo
▴ 310
1
vote
8
replies
1.4k
views
18S taxonomy assignment SILVA database formatting
assignTaxonomy
18S
dada2
SILVA
12 months ago by
mbuenner
• 0
3
votes
3
replies
991
views
When counting ASVs in DADA2, does a hit/count only occur at 100% alignment percent identity?
metagenomics
qiime2
amplicon
16s
dada2
updated 13 months ago by
andres.firrincieli
3.7k • written 13 months ago by
O.rka
▴ 740
0
votes
0
replies
394
views
Correct 18S data file to assign taxonomy
dada2
R
updated 15 months ago by
Ram
44k • written 15 months ago by
Bioinfo
▴ 20
1
vote
1
reply
774
views
Assigned taxonomy after dada2 only "NAs" or "Mitochondria"
16S
dada2
DECIPHER
ITS
taxonomy
16 months ago by
mattze731
▴ 20
0
votes
3
replies
2.0k
views
Dada2 in Qiime2: losing reads during merging
Qiime2
Chimer
Dada2
updated 16 months ago by
andres.firrincieli
3.7k • written 16 months ago by
kamanovae
▴ 100
0
votes
3
replies
976
views
filterAndTrim : Error in add(bin) : record does not start with '@'
R
filterAndTrim
DADA2
updated 19 months ago by
GenoMax
145k • written 19 months ago by
Bioinfo
▴ 20
3
votes
2
replies
775
views
Cause of short sequences in Amplicon Sequencing?
Illumina
ASV
Amplicon
DADA2
19 months ago by
Saran
▴ 50
0
votes
2
replies
895
views
Database for taxonomic assignment of shotgun sequencing reads data
dada2
shotgun
assignment
rawdata
sequencing
taxonomic
updated 22 months ago by
Chris Dean
▴ 410 • written 22 months ago by
Muhammad
• 0
1
vote
3
replies
883
views
Need help in using dada2
dada2
R
updated 16 months ago by
Ram
44k • written 24 months ago by
rishav513
▴ 30
4
votes
6
replies
1.7k
views
Does ASVs IDs from dada2 have specific taxonomic assignments?
dada2
R
ASVs
updated 11 months ago by
andres.firrincieli
3.7k • written 2.0 years ago by
v.berriosfarias
▴ 140
0
votes
3
replies
2.0k
views
Are there any tools that automatically detect where to truncate forward and reverse reads for 16S (DADA2)?
16s
dada2
illumina
metagenomics
qiime2
2.1 years ago by
O.rka
▴ 740
1
vote
1
reply
555
views
Preparing fastq files
DADA2
updated 2.2 years ago by
rpolicastro
13k • written 2.2 years ago by
rosypink160
• 0
0
votes
2
replies
1.2k
views
setting overlap in DADA2 in qiime2
dada2
qiime
qiime2
2.2 years ago by
blur
▴ 280
0
votes
0
replies
392
views
Is it normal that my amplicon sequence variants (ASVs) have gaps ?
ASVs
DADA2
fasta
2.2 years ago by
v.berriosfarias
▴ 140
0
votes
2
replies
3.3k
views
Issues removing unwanted taxa from phyloseq object
ASV
phyloseq
taxonomy
dada2
updated 14 months ago by
f_rah
• 0 • written 2.6 years ago by
bioinfo_or_bust
• 0
0
votes
0
replies
347
views
Get corresponding Input Sequence from Dada2 results
Dada2
updated 2.4 years ago by
Ram
44k • written 2.4 years ago by
a.krassnig
▴ 20
0
votes
0
replies
408
views
translateMetagenome2AGORA
metabolic-potential
dada2
cobra
microbiome-modelling-toolbox
microbiome
updated 15 months ago by
Ram
44k • written 2.6 years ago by
ymj
▴ 10
1
vote
3
replies
791
views
Analyze NIH 16s data with DADA2
NIH
DADA2
microbiome
16s
R
updated 2.6 years ago by
M__
▴ 200 • written 2.6 years ago by
mb2subi
▴ 10
0
votes
7
replies
1.7k
views
Access Denied when using FilterAndTrim of DADA2 package
dada2
filterAndTrim
accessdenied
updated 2.8 years ago by
antonioggsousa
3.2k • written 2.9 years ago by
ymj
▴ 10
0
votes
0
replies
1.2k
views
How to format a FASTA file (based on an ASV table) for clustering in Swarm?
dada2
SWARM
clustering
ASV
2.9 years ago by
Ellen
▴ 20
1
vote
1
reply
2.0k
views
High % of reads lost to chimera filtering in DADA2
16S
amplicon
DADA2
chimeras
sequencing
updated 3.0 years ago by
h.mon
35k • written 3.0 years ago by
lintonf
• 0
1
vote
3
replies
2.1k
views
Unusual sequence quality plots - DADA2 pipeline
sequencing
dada2
software error
R
updated 3.1 years ago by
epb5360
• 0 • written 4.5 years ago by
cs1878
• 0
1
vote
0
replies
984
views
QIIME2 quality control
control
dada2
quality
qiime2
3.2 years ago by
blur
▴ 280
0
votes
0
replies
945
views
Quality score and trimming length in DADA2
QIIME2
DADA2
3.3 years ago by
yohannessys
• 0
0
votes
1
reply
941
views
dada2: plotQualityProfile - Error: IncompleteFinalRecord
r
amplicon
dada2
3.3 years ago by
ben.tatton
• 0
0
votes
3
replies
2.2k
views
Can you generate ASVs from pre-merged paired-end reads?
ASV
OTU
dada2
qiime2
16S
updated 3.6 years ago by
AfinaM
▴ 30 • written 3.6 years ago by
sambjohnson94
• 0
2
votes
4
replies
1.6k
views
16S amplicon sequencing unequal read lengths
sequencing
DADA2
FIGARO
16s amplicon sequencing
updated 3.9 years ago by
Biostar
20 • written 4.0 years ago by
Earendil
▴ 50
0
votes
2
replies
1.6k
views
amplicon sequencing downstream analysis and data normalization
vst
dada2
deseq2
phyloseq
amplicon
4.4 years ago by
rita.bogorad
• 0
2
votes
2
replies
2.3k
views
Database Recommendations for 16S-seq of the V4 Region
16S-seq
Taxonomy
SILVA
microbiome
DADA2
5.0 years ago by
dmj6ab
▴ 20
1
vote
3
replies
1.3k
views
Job:
DADA2/R Programmer Needed for One-Time Job
R
microbiome
dada2
updated 16 months ago by
Ram
44k • written 5.0 years ago by
espop23
▴ 60
7
votes
12
replies
8.6k
views
How to Demultiplex a fastq.gz file.
illumina
de-multiplexing
Miseq
fastq
dada2
5.1 years ago by
eli_bayat
▴ 90
0
votes
0
replies
785
views
Could my primers not have trimmed properly?
ITS
Trimming
Primer
DADA2
5.2 years ago by
k-vincent
• 0
0
votes
2
replies
2.4k
views
Algal vs bacterial 16s chloroplast
16S
Chloroplast
Cyanobacteria
DADA2
Chlamydomonas
updated 5.6 years ago by
Chris Fields
★ 2.2k • written 5.6 years ago by
khp35
• 0
1
vote
1
reply
2.3k
views
Trouble preparing paired-end (MiSeq 2x250), double-tagged and dual-indexed reads from metabarcoding study for DADA2 pipelin
sequencing
next-gen
metabarcoding
DADA2
amplicon
updated 5.6 years ago by
magda.wutkowska
• 0 • written 6.8 years ago by
jack1120
▴ 30
3
votes
5
replies
1.7k
views
Identifying shared exact sequence variants between two datasets
alignment
dada2
16s
microbiome
NGS
updated 5.7 years ago by
Charles Yin
▴ 180 • written 5.7 years ago by
adam.sorbie
• 0
3
votes
6
replies
2.0k
views
Parsing a FASTQ File
dada2
updated 6.2 years ago by
Dattatray Mongad
▴ 380 • written 6.2 years ago by
mrsmith
▴ 50
1
vote
0
replies
2.3k
views
Generate an amplicon sequence variant table without quality data using dada2 or similar in R
R
dada2
amplicon sequence data
6.4 years ago by
caverill
▴ 40
50 results • Page
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