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Showing top results for tag:
DIAMOND
•
reset
0
votes
3
replies
416
views
Splitting query fasta file for Diamond Blastp make the process faster?
DIAMOND
5 months ago by
kmat
• 0
1
vote
1
reply
347
views
Can diamond prepdb be used to make a taxonomically aware database?
blast
diamond
taxonomy
updated 5 months ago by
GenoMax
146k • written 5 months ago by
cedric.blais
▴ 20
2
votes
3
replies
775
views
eggNOG versus Diamond blastp
diamond
eggNOG
protein
functional
updated 9 months ago by
Dunois
★ 2.7k • written 9 months ago by
young_bioinformatician
▴ 240
0
votes
3
replies
895
views
How to run diamond blastp to get all vs all similarity score between proteins?
protein
blastp
clustering
diamond
10 months ago by
Bioinformatics_begginner
▴ 20
1
vote
1
reply
591
views
DIAMOND tutorial
tutorial
DIAMOND
updated 11 months ago by
GenoMax
146k • written 11 months ago by
sooni
▴ 20
1
vote
2
replies
560
views
How can I amend the output of a DIAMOND python script?
Python
Diamond
COG_analysis
11 months ago by
eam-hmc
• 0
0
votes
2
replies
677
views
Diamond blast running in a loop
nanopore
blast
diamond
12 months ago by
bioinfo_ga
▴ 70
0
votes
0
replies
381
views
diamond blastx to screen contigs for a specific protein
genomics
orthologs
diamond
15 months ago by
Roberto
▴ 20
0
votes
1
reply
1.0k
views
Which KEGG Database to use for DIAMOND annotation of predicted gene coding regions?
metatranscriptomics
KEGG
RNA-seq
prodigal
DIAMOND
updated 15 months ago by
Asaf
10k • written 15 months ago by
Lily
• 0
0
votes
2
replies
869
views
Meganizing file via server
server
diamond
megan
16 months ago by
Kárita
• 0
2
votes
5
replies
1.5k
views
Creating a local version of Clustered NR database
diamond
clustered-nr
blast
updated 17 months ago by
GenoMax
146k • written 17 months ago by
Wilford203
▴ 10
0
votes
0
replies
409
views
GO analysis using diamond blastp output
blastp
GO
analysis
Diamond
19 months ago by
hellokwmin
• 0
5
votes
9
replies
2.8k
views
6 follow
Most efficient way to run Diamond against a very very large database (i.e., NCBI's NR)?
protein
annotation
alignment
diamond
nr
updated 15 months ago by
GenoMax
146k • written 19 months ago by
O.rka
▴ 740
0
votes
0
replies
485
views
Diamond blast functional annotation
blast
Diamond
updated 19 months ago by
Ram
44k • written 19 months ago by
hellokwmin
• 0
0
votes
2
replies
1.3k
views
How do I convert a DIAMOND .daa file into human readable format?
Diamond
updated 22 months ago by
Ram
44k • written 23 months ago by
maria.chalsev
• 0
1
vote
1
reply
678
views
Diamond makedb --Error: Invalid taxonomic rank
Diamond
updated 22 months ago by
Ram
44k • written 22 months ago by
327362511
• 0
0
votes
0
replies
383
views
How to estimate the memory requirements for Diamond given the database and query protein sizes?
alignment
diamond
memory
requirements
22 months ago by
O.rka
▴ 740
0
votes
1
reply
707
views
How to perform 6 Frame Translation with Diamond
Genomics
Translation
Protein
DNA
Diamond
updated 2.2 years ago by
GenoMax
146k • written 2.2 years ago by
m.radz
▴ 10
0
votes
4
replies
2.0k
views
Issue with diamond makedb and the "taxonmap" parameter
diamond
updated 2.2 years ago by
fabineves7
• 0 • written 2.6 years ago by
Alessandro
• 0
0
votes
4
replies
1.4k
views
makedb process issue - Error: staxids output field requires setting the --taxonmap parameter #601
Diamond
updated 19 months ago by
Ram
44k • written 2.3 years ago by
fabineves7
• 0
0
votes
0
replies
395
views
Taxonomic information for diamond blastp results
Taxonomy
blastp
diamond
2.4 years ago by
Utkarsha
• 0
0
votes
0
replies
457
views
How to draw diamond as long as confidence interval in forest plot in R
meta
forestplot
diamond
2.4 years ago by
Phylicia
▴ 10
0
votes
1
reply
1.2k
views
Diamond and Taxonomic information
diamond
taxids
taxonkit
taxonomy
2.5 years ago by
emiliomastriani
▴ 40
2
votes
4
replies
2.6k
views
emapper - Error: Invalid output field: scovhsp
field
output
diamond
emapper
EggNOG
2.6 years ago by
N.D.Hubot
▴ 10
0
votes
1
reply
543
views
Running eggNOG only uses small percentage of allocated CPU
diamond
emapper
annotation
eggNOG
protein
updated 2.6 years ago by
jv
★ 1.8k • written 2.6 years ago by
Emilie Jensen
• 0
0
votes
1
reply
1.2k
views
Where can I find prebuilt diamond databases that also contain taxonomy information?
taxonomy
database
diamond
alignment
protein
updated 2.7 years ago by
GenoMax
146k • written 2.7 years ago by
O.rka
▴ 740
0
votes
0
replies
399
views
Is there a similar option to Diamond's --max-target-seqs in MMSeqs2?
metagenomics
diamond
blastp
alignment
mmseqs2
2.7 years ago by
O.rka
▴ 740
0
votes
4
replies
1.4k
views
Forum:
Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond
performance
EPYC
7643
multithreading
AMD
poor
updated 2.7 years ago by
GenoMax
146k • written 2.7 years ago by
Balazs Horvath
▴ 10
0
votes
8
replies
2.2k
views
Diamond error :Failed to allocate sufficient memory. Please refer to the manual for instructions on memory usage.
diamond
updated 2.8 years ago by
GenoMax
146k • written 2.8 years ago by
Ap1438
▴ 50
4
votes
10
replies
5.3k
views
Illegal instruction (core dumped)
diamond
updated 2.8 years ago by
GenoMax
146k • written 2.8 years ago by
Ap1438
▴ 50
0
votes
2
replies
1.0k
views
How can I makedatabase for env_nt.tar.gz (from NCBI ftp site) in Diamond
Diamond
Database
formation
2.9 years ago by
nonaddldy
▴ 10
1
vote
1
reply
971
views
High Number of Unassigned Reads in MEGAN?
diamond
megan
metagenomics
updated 2.9 years ago by
student
• 0 • written 3.3 years ago by
ian.petersen
▴ 10
0
votes
7
replies
2.7k
views
DIAMOND alignment processing time
DIAMOND
HPC
updated 2.5 years ago by
valentina
▴ 60 • written 3.0 years ago by
Dee
• 0
2
votes
1
reply
746
views
Select human protein coding transcripts in Diamond
diamond
blastx
updated 3.0 years ago by
GenoMax
146k • written 3.0 years ago by
bart
▴ 50
1
vote
6
replies
5.3k
views
Creating DIAMOND database on HPC
Database
DIAMOND
HPC
3.0 years ago by
Dee
• 0
0
votes
1
reply
1.0k
views
Diamond and Taxonomic information
daa
megan
taxonomy
Diamond
updated 3.0 years ago by
Istvan Albert
101k • written 3.0 years ago by
emiliomastriani
▴ 40
0
votes
5
replies
1.8k
views
Diamond blastx: does it support SLURM?
hpc
diamond
sbatch
slurm
updated 3.0 years ago by
colindaven
6.8k • written 3.0 years ago by
emiliomastriani
▴ 40
11
votes
16
replies
6.1k
views
6 follow
NCBI NR protein db nr.gz FASTA inflate error?
DIAMOND
NCBI
alignment
Megan6
updated 19 months ago by
Ram
44k • written 3.1 years ago by
nina.maryn
▴ 30
1
vote
4
replies
2.0k
views
How do you add gene annotations from a Diamond Blastx tsv file to a csv file with RNAseq differential expression data?
BLASTx
RNA-seq
diamond
updated 13 months ago by
Ram
44k • written 3.3 years ago by
kristina.mahan
▴ 170
2
votes
2
replies
2.3k
views
How Should I Deal with Paired-End Shotgun Metagenomic Reads for DIAMOND Analysis?
diamond
metagenomics
megan
paired-end
updated 3.3 years ago by
h.mon
35k • written 3.3 years ago by
ian.petersen
▴ 10
0
votes
2
replies
740
views
diamond exit with code 35584
diamond
proteinortho
3.3 years ago by
圣彬
• 0
1
vote
1
reply
880
views
Diamond blastx output is huge and Megan crashes upon importing
diamond
3.6 years ago by
shinyi.marzano
▴ 10
1
vote
1
reply
781
views
blastx diamond returns taxid "NA" for some sequence queries
blastx
diamond
taxonomy
3.7 years ago by
pedrorodrigues
▴ 10
6
votes
6
replies
7.2k
views
Is it possible to get taxonomy identifiers from diamond output without using --taxonmap during makedb?
diamond
blast
protein
alignment
taxonomy
updated 12 months ago by
katieostrouchov
▴ 30 • written 4.9 years ago by
O.rka
▴ 740
0
votes
6
replies
4.6k
views
diamond blastp produce longer alignments with lower identity than ncbi blast
alignment
blastp
diamond
4.2 years ago by
biobiu
▴ 150
4
votes
6
replies
961
views
Join Information of file 2 in file 1
tables
diamond
database
updated 4.5 years ago by
GenoMax
146k • written 4.5 years ago by
vborincenturion
• 0
0
votes
2
replies
1.1k
views
How to get "best" taxon identifier from diamond output with staxids?
metagenomics
blast
diamond
alignment
protein
4.6 years ago by
O.rka
▴ 740
2
votes
3
replies
3.9k
views
How can I get taxonomy identifiers (staxids) using diamond? (Error: Invalid output format. Allowed values: 0,5,6,100,101,102)
alignment
diamond
updated 4.6 years ago by
Pierre Lindenbaum
164k • written 4.6 years ago by
O.rka
▴ 740
0
votes
0
replies
712
views
diamond (blast) exit codes
diamond
exit codes
4.6 years ago by
sapuizait
▴ 10
2
votes
0
replies
1.6k
views
GO annotation on diamond blasted transcriptome (nr db)
RNA-Seq
GO
diamond
blast
4.8 years ago by
jfo
▴ 50
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