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50 results • Page
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Showing top results for tag:
DEG
•
reset
2
votes
2
replies
169
views
statistical testing for MS/MS proteomics bulk samples
DEG
proteomics
updated 3 days ago by
ATpoint
85k • written 3 days ago by
QX
▴ 60
1
vote
1
reply
219
views
Pacbio scRNA-seq
NGS
DEG
scRNA-seq
pacbio
updated 6 days ago by
GenoMax
146k • written 6 days ago by
SEO
• 0
1
vote
2
replies
339
views
DESeq2: adjusted p-values become NA when sub-setting samples
R
DEG
RNA-seq
DESeq2
updated 21 days ago by
GenoMax
146k • written 21 days ago by
txema.heredia
▴ 190
4
votes
3
replies
559
views
Are tens of DEGs still biologically meaningful?
DEG
differential-expression-analysis
updated 4 weeks ago by
DGTool
▴ 290 • written 4 weeks ago by
FedeXandeR
▴ 20
1
vote
1
reply
245
views
Interpreting MA plot - DEG
R
DEG
ggplot2
updated 5 weeks ago by
Ram
44k • written 5 weeks ago by
NEWBIE
• 0
1
vote
3
replies
393
views
Finding common genes for evolutionary analyses after finding DEG's from different env. stressed plants
DEG
Galaxy-server
RNA-seq
5 weeks ago by
candy
• 0
3
votes
5
replies
625
views
DEGs vs WGCNA: What am I really looking at?
deseq2
RNA-seq
deg
wgcna
12 weeks ago by
christiantd
• 0
36
votes
12
replies
1.1k
views
11 follow
Forum:
How to improve a bioinformatics study and paper so that it is not considered "too preliminary" by publishers and journals?
DEG
journal
updated 3 months ago by
Matthias Zepper
4.9k • written 3 months ago by
egascon
▴ 60
3
votes
1
reply
248
views
4-way plot for comparing DEGs between 4 genotypes
DEG
updated 3 months ago by
dthorbur
★ 2.5k • written 3 months ago by
jaint1
• 0
1
vote
2
replies
320
views
NA is p-valueas & p.adj in DESeq2
FDR
DEG
p-value
DESeq2
4 months ago by
Milly
• 0
0
votes
1
reply
283
views
Does it make sense to do hdWGCNA following the DEG analysis?
DEG
WGCNA
single-cell
updated 3 months ago by
edoardofilippi1998
• 0 • written 4 months ago by
paria
▴ 90
2
votes
2
replies
427
views
Finding DEGs of cell type comprising of more than one clusters
DEG
FindAllMarkers
scRNA-seq
single-cell
updated 4 months ago by
Ram
44k • written 4 months ago by
sc_analysis
• 0
0
votes
3
replies
624
views
Transcriptome analysis of virus infected plants and their controls
DEG
heatmap
rna
updated 4 months ago by
manaswwm
▴ 530 • written 4 months ago by
diya
• 0
4
votes
13
replies
1.8k
views
7 follow
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
DEG
limma
rstudio
updated 4 months ago by
GenoMax
146k • written 5 months ago by
egascon
▴ 60
0
votes
2
replies
324
views
Bias in FDR distribution
DEG
distribution
p-value
limma
5 months ago by
Daniel
▴ 10
0
votes
6
replies
545
views
Why most genes have high padj values
RNA-seq
DEG
updated 5 months ago by
Ram
44k • written 5 months ago by
mnx0723
• 0
3
votes
5
replies
930
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
updated 5 months ago by
arctic
▴ 40 • written 6 months ago by
M.
▴ 40
0
votes
2
replies
322
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
6 months ago by
Lluís R.
★ 1.2k
4
votes
13
replies
1.4k
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 6 months ago by
BioinfGuru
★ 2.1k • written 6 months ago by
matteo.levorato
• 0
1
vote
0
replies
245
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 6 months ago by
Ram
44k • written 6 months ago by
ian.will
▴ 30
0
votes
1
reply
397
views
How to do further funtional analysis of DEG KeggGet output list?
KEGGREST
DESEQ2
RNA-Seq
DEG
6 months ago by
joana.maclean
• 0
0
votes
2
replies
388
views
DEG (Differential expression gene) analysis
DEG
R
updated 7 months ago by
dsull
★ 6.9k • written 7 months ago by
sooni
▴ 20
2
votes
2
replies
441
views
compare dimplot(single cell)
DEG
scRNAseq
7 months ago by
kayah
▴ 20
1
vote
5
replies
604
views
how to convert SummarizedExperiment files to DESeqDataSet??
scRNA-seq
DEG
DESeq2
updated 7 months ago by
Haci
▴ 730 • written 7 months ago by
kayah
▴ 20
0
votes
1
reply
343
views
Analyzing scRNA seq data and want to analyze it's DEG with DESeq2
scRNA-seq
DEG
DESeq2
7 months ago by
kayah
▴ 20
3
votes
3
replies
711
views
How to analyze DEGs in scRNA-seq data?
DEG
single-cell
scRNA-seq
rna-seq
updated 8 months ago by
Ram
44k • written 8 months ago by
kayah
▴ 20
1
vote
1
reply
472
views
shotgun metagenomics degs analysis
deg
degs
shotgun
updated 8 months ago by
colindaven
6.8k • written 8 months ago by
sooni
▴ 20
0
votes
0
replies
410
views
Evaluate if distribution of interest genes (X) against non-interested genes (Y) or empirical theorical distribution
R
DEG
9 months ago by
PBC
▴ 10
5
votes
4
replies
815
views
Differing p-value cutoffs of limma derived DEGs in volcanoplots
timecourse
rnaseq
limma
deg
9 months ago by
JirMan
▴ 40
1
vote
0
replies
302
views
DESeq2 contrasts and design formula for 2 conditions and 3 exposure times
DESeq2
DEG
updated 9 months ago by
Ram
44k • written 9 months ago by
pcar
▴ 10
2
votes
5
replies
864
views
plotCounts() error in R: indexing outside of limit
R
DESeq2
DEG
8 months ago by
ella
• 0
0
votes
2
replies
554
views
GEO Affymetrix data for differential expression analysis?
affymetrix
GEO
DEG
9 months ago by
sativus
▴ 20
1
vote
2
replies
427
views
pooling DEGs calculated from various tissues
differentially
DEG
expressed
DEP
genes
9 months ago by
mirshahvaladi
• 0
4
votes
4
replies
797
views
Question about identification of DEGs in paired sample using edgeR
edgeR
DEG
9 months ago by
tujuchuanli
▴ 130
0
votes
5
replies
792
views
how to start DEG analysis after featurecounts
RNAseq
DEG
9 months ago by
kayah
▴ 20
5
votes
12
replies
1.3k
views
Deseq2 returned the same p-adj for several genes
P-adj
Deseq2
DEG
updated 9 months ago by
Ram
44k • written 10 months ago by
Matt
• 0
2
votes
3
replies
479
views
Removal of overexpression construct prior to analysis of differentially expressed genes/ salmon?
DEG
RNASeq
DGE
salmon
DESeq2
updated 10 months ago by
GenoMax
146k • written 10 months ago by
ella
• 0
0
votes
12
replies
3.1k
views
Differential gene expression analysis with no replicates using edgeR
edgeR
RNA-seq
DEG
updated 10 months ago by
Sajad
▴ 90 • written 23 months ago by
Apex92
▴ 300
2
votes
2
replies
658
views
how to draw the volcano plot for DEGs in a different way
volcano-plot
DEG
updated 10 months ago by
Ram
44k • written 10 months ago by
luckyday1661
▴ 10
9
votes
2
replies
681
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq
scrna-seq
deg
deseq2
updated 11 months ago by
LauferVA
4.5k • written 11 months ago by
ahmad mousavi
▴ 800
4
votes
2
replies
1.2k
views
GSEApy plot TypeError
gsea
python
DEG
updated 11 months ago by
Ram
44k • written 12 months ago by
Emily
▴ 70
3
votes
9
replies
2.8k
views
Differential Expression Analysis using Bioconductor (RStudio) and GEO2R (GEO)
R
gene
DEG
Bioconductor
microarray
updated 12 months ago by
Bruno
• 0 • written 4.7 years ago by
a.lathifbt
▴ 30
7
votes
13
replies
1.3k
views
deal with PCA and my samples
PCA
DEG
meta-analysis
12 months ago by
ali
• 0
0
votes
1
reply
512
views
Testing the interaction term in single-cell RNAseq DEG analysis
DEG
scRNAseq
Seurat
updated 12 months ago by
ATpoint
85k • written 12 months ago by
cwwong13
▴ 40
0
votes
0
replies
303
views
Transcriptome de novo from different library types
rna-seq
de-novo-transcriptome
deg
updated 12 months ago by
Ram
44k • written 12 months ago by
Jana
• 0
0
votes
2
replies
698
views
Cross validate RNA-seq and ATAC-seq
DAR
cross-validation
DEG
ATAC-seq
RNA-seq
updated 12 months ago by
ATpoint
85k • written 12 months ago by
Wang Cong
▴ 10
0
votes
2
replies
785
views
To draw a heatmap displaying DEGs associated with a specific KEGG pathway.
heatmap
KEGG
DEG
updated 12 months ago by
yhdist
▴ 70 • written 12 months ago by
Biostars2200
• 0
0
votes
1
reply
641
views
How to interpret the negative Log2FC from DESeq2 output?
DESeq2
statistics
gene-expression
DEG
updated 12 months ago by
Ram
44k • written 12 months ago by
Apex92
▴ 300
1
vote
3
replies
1.5k
views
DESeq2 lfcshrink, shrinkage apeglm vs normal
DESeq2
RNA-seq
DEG
shrinkage
updated 12 months ago by
antonioggsousa
3.2k • written 12 months ago by
joonhong kwon
▴ 70
0
votes
1
reply
434
views
small RNAseq analysis of non human samples
lncRNA
sRNA
DEG
small-RNA
RNA-seq
updated 13 months ago by
Ram
44k • written 13 months ago by
luffy
▴ 130
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