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50 results • Page
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Showing top results for tag:
BigWig
•
reset
1
vote
4
replies
503
views
IGV - ChIP-Seq
BigWig
IGV
BedGraph
Bed
updated 3 months ago by
rfran010
★ 1.3k • written 3 months ago by
SEJAL
• 0
10
votes
8
replies
5.6k
views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc
bigwig
BedgraphToBigWig
bamCoverage
deeptools
updated 4 months ago by
QX
▴ 60 • written 6.2 years ago by
m98
▴ 420
3
votes
12
replies
6.1k
views
8 follow
txt file to bigwig
MEME
bigwig
updated 3 months ago by
GenoMax
146k • written 9.0 years ago by
tanni93
▴ 50
0
votes
2
replies
459
views
perl Error - needLargeMem Bigwig
Bigwig
perl
mitosalt
5 months ago by
marco.barr
▴ 150
0
votes
5
replies
671
views
How to convert normalized BigWig file to count matrix?
count-matrix
BigWig
5 months ago by
feather-W
• 0
0
votes
1
reply
486
views
Fold change vs signal p-value in ENCODE ATAC-seq
encode
bigwig
atac-seq
updated 7 months ago by
LChart
4.3k • written 7 months ago by
barcagro
• 0
0
votes
1
reply
415
views
Issue with bigWigSummary utility of Kent/UCSC utilities
bigWig
UCSC
updated 7 months ago by
Pierre Lindenbaum
164k • written 7 months ago by
eeb74
• 0
1
vote
2
replies
506
views
Normalization of Bigwig file
ATAC
BigWig
updated 8 months ago by
Ram
44k • written 8 months ago by
daffodil
▴ 10
0
votes
0
replies
209
views
Need bedGraph File from VarScan2 Output
bedGraph
Deeptools
VarScan2
bigwig
bed
updated 9 months ago by
Ram
44k • written 9 months ago by
Jacob
• 0
0
votes
0
replies
415
views
BigWig file Normalization
Bigwig
file
10 months ago by
daffodil
▴ 10
10
votes
18
replies
1.9k
views
BedGraph file
bam
BigWig
10 months ago by
daffodil
▴ 10
3
votes
7
replies
1.4k
views
IGV not showing bigwig track information
bigwig
IGV
ChIP-seq
updated 11 months ago by
ATpoint
85k • written 11 months ago by
Rory Osborne
▴ 10
0
votes
1
reply
693
views
How to import bigwig files into igvR
bigwig
igvr
updated 13 months ago by
Trivas
★ 1.8k • written 13 months ago by
ntsopoul
▴ 60
0
votes
1
reply
1.1k
views
computeMatrix error: [pyBwOpen] bw is NULL!
deeptools
bigWig
computeMatrix
updated 14 months ago by
rfran010
★ 1.3k • written 14 months ago by
bp22
▴ 80
3
votes
5
replies
1.1k
views
BedGraph to bigwig inside Pipe?
bigwig
bedGraph
pipe
updated 14 months ago by
LChart
4.3k • written 14 months ago by
vanbelj
▴ 40
0
votes
5
replies
1.1k
views
How to convert BigWig file to GCT File?
bigwig
rna-seq
gct
updated 14 months ago by
Ram
44k • written 14 months ago by
NikhilP
▴ 20
0
votes
0
replies
376
views
ATAC: Finding peaks in BW file
ATAC
bigwig
19 months ago by
weimichelles
• 0
0
votes
0
replies
423
views
Does the bigwig file of a single-end chip-seq shows 2 peaks for a fragment whereas the paired-end show one peak ?
peak
chip-seq
bigwig
single-end
updated 19 months ago by
Ram
44k • written 19 months ago by
Rajendra KC
▴ 20
0
votes
0
replies
489
views
Any straightforward way to re-bin a bigWig file?
bigwig
19 months ago by
rls_08
▴ 40
3
votes
2
replies
982
views
BigWig format (Cut&Run)
BigWig
19 months ago by
Usama
• 0
2
votes
7
replies
7.9k
views
making a BIGWIG from BAM file
bam
samtools
bigwig
updated 20 months ago by
ATpoint
85k • written 20 months ago by
Rajendra KC
▴ 20
0
votes
0
replies
652
views
Using bigWigCompare to correct for input signal
peaks
chip-seq
deeptools
bigwig
updated 16 months ago by
Ram
44k • written 21 months ago by
Maycon
• 0
0
votes
0
replies
459
views
Using DANPOS2 to determine nucleosome positions
MNase-seq
DANPOS
ENCODE
bigwig
21 months ago by
elisheva
▴ 120
0
votes
0
replies
627
views
Differential Peak Analysis for a specific gene using only bigWig + BED files?
differential
peak
bigwig
chip-seq
analysis
21 months ago by
Maycon
• 0
1
vote
3
replies
939
views
Extracting list of target genes from ChIP-seq bigwig file
target
ChIP-seq
bigwig
gene
updated 21 months ago by
ATpoint
85k • written 21 months ago by
jennifer.conrad84
▴ 10
0
votes
2
replies
762
views
BedGraph to bigWig
bigWig
BedGraph
Galaxy
ATAC-seq
updated 17 months ago by
Ram
44k • written 22 months ago by
abhay.kanodia
▴ 10
2
votes
2
replies
898
views
ChIP-seq peak calling
narrow_Peak
ENCODE
ChIPseq
BigWig
23 months ago by
Omnia
• 0
0
votes
0
replies
445
views
.BigWig file has more peaks than reads in .Bam file?
chipseq
chipqc
bam
bigwig
R
24 months ago by
Aryan
▴ 40
2
votes
1
reply
1.3k
views
normalize and compare bigwig files
bigwig
updated 2.1 years ago by
Matthias Zepper
4.9k • written 2.1 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
795
views
Empty bigwig files after ucsc-bedGraphtobigwig
bedgraph
bigwig
2.1 years ago by
Katara
• 0
5
votes
5
replies
1.9k
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC
bigwig
updated 2.2 years ago by
ATpoint
85k • written 2.2 years ago by
Dan
▴ 180
5
votes
8
replies
2.2k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
570
views
bedgraphToBigWig error
Bedgraph
ucscPath
BigWig
R
updated 2.3 years ago by
GenoMax
146k • written 2.3 years ago by
Mireia
• 0
0
votes
2
replies
714
views
different pileups between sorted.bam file and bigwig file
bigwig
deeptools
IGV
updated 16 months ago by
Ram
44k • written 2.5 years ago by
bioyas
▴ 20
3
votes
5
replies
2.3k
views
Loading possorted_genome_bam.bam generated by 10X cellranger count command into IGV.
cellranger
deeptools
bigwig
IGV
single-cell
updated 16 months ago by
Ram
44k • written 2.5 years ago by
bioyas
▴ 20
2
votes
2
replies
993
views
bedgraph to bigwig
bigwig
bedgraph
deeptools
methylation
updated 16 months ago by
Ram
44k • written 2.6 years ago by
Florencia
• 0
0
votes
0
replies
382
views
Mapq filtered bigwigs have higher peaks than unfiltered bigwigs?
bigwig
normalization
deeptools
mapq
updated 16 months ago by
Ram
44k • written 2.6 years ago by
Megan
• 0
2
votes
3
replies
993
views
Running bigWigToWig using Anaconda in a Linux System
anaconda
bigwig
2.8 years ago by
jachimowicz9002
▴ 10
7
votes
7
replies
4.4k
views
How to perform normalization when converting ATAC bam file to bigwig file using deeptools for IGV visualization
bamCoverage
deeptools
bigwig
IGV
ATAC
updated 7 months ago by
sgv
• 0 • written 2.8 years ago by
sir.outman
▴ 40
6
votes
3
replies
1.6k
views
Merge two multi-chromosome WIG files
wiggle
bigwig
wig
updated 2.8 years ago by
Alex Reynolds
35k • written 2.8 years ago by
kmyers2
▴ 90
1
vote
1
reply
864
views
Convertion of each bedGraph coverage into bigWig coverage not working
bigWig
bedGraph
updated 2.8 years ago by
Ram
44k • written 2.8 years ago by
naloy
▴ 10
2
votes
1
reply
813
views
Smoothing r binning bigwig plots in R
bigwig
R
bam
updated 2.9 years ago by
ATpoint
85k • written 2.9 years ago by
star715
▴ 50
2
votes
3
replies
1.1k
views
How to identify differential enhancers?
EdgeR
ChIP-seq
Bigwig
Differential
enhancer
Deseq2
updated 2.9 years ago by
ATpoint
85k • written 2.9 years ago by
2973520704
• 0
0
votes
0
replies
516
views
What is the relationship between the value of the bigwig file generated by MACS2 and the read count?
Bigwig
ChIP-seq
Read
count
2.9 years ago by
2973520704
• 0
0
votes
4
replies
1.8k
views
Reads detected/"spill over" on introns after using bamCoverage function from deepTools
bamCoverage
deepTools
bigwig
intron
updated 3.0 years ago by
cpad0112
21k • written 3.8 years ago by
kdcastillo
• 0
0
votes
0
replies
650
views
Measure genome-wide agreement of peaks in
bigwig
atac-seq
macs2
updated 19 months ago by
Ram
44k • written 3.0 years ago by
Al Murphy
▴ 40
2
votes
4
replies
1.2k
views
convert genomic bigWig file to transcriptome space
bigWig
bw
3.2 years ago by
noodle
▴ 590
1
vote
1
reply
1.5k
views
Get chromosome names of a bigwig file
bigwig
updated 3.2 years ago by
Ram
44k • written 3.2 years ago by
grey
▴ 40
3
votes
2
replies
1.9k
views
Download bigWig files of publicly available ChIP-seq samples
cistrome
bigwig
chip-seq
3.2 years ago by
Friederike
9.0k
1
vote
3
replies
2.8k
views
zsh: exec format error: bigWigToWig
bigwig
wig
bed
updated 3.2 years ago by
GenoMax
146k • written 3.2 years ago by
adash33
• 0
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