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News: Machine Learning for Multi-Omics Integration (online course) -January 13-15, 2025
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 19 days ago by 44k • written 20 days ago by ★ 2.6k
1
vote
0
replies
259
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News: Course - Machine Learning for Multi-Omics Integration
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
0
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0
replies
658
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Job: Data Engineer/Architect III to support CDC
big-data architect public-health
updated 2.3 years ago by 44k • written 2.4 years ago by • 0
0
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0
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1.5k
views
Job: Microbial cell factory engineer at DTU Biosustain
big-data genome multi-OMICS
updated 16 months ago by 44k • written 3.8 years ago by ▴ 80
12
votes
9
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12k
views
8 follow
Get number of variations in a huge VCF using Tabix?
vcf tabix big-data variation
updated 2.2 years ago by 44k • written 9.0 years ago by ▴ 540
1
vote
0
replies
673
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 17 months ago by 44k • written 4.6 years ago by ▴ 10
1
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4
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3.6k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics at UNC Charlotte, NC, USA
genomics big-data R statistics ngs
updated 17 months ago by 44k • written 6.5 years ago by ▴ 440
9
votes
6
replies
4.1k
views
7 follow
Big Data Approaches For Bioinformatics
hadoop big-data
updated 20 months ago by 44k • written 11.3 years ago by ▴ 20
0
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0
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1.5k
views
Job: Technical Project Manager for translational data science projects (Chicago, IL)
big-data informatics genomics
updated 17 months ago by 44k • written 5.2 years ago by ▴ 310
11
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13
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5.2k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 17 months ago by 44k • written 5.4 years ago by ▴ 840
0
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0
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1.4k
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Job: Data Manager - BC Cancer Research Center, Vancouver BC
computational big-data genomic
updated 17 months ago by 44k • written 5.4 years ago by • 0
0
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0
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1.6k
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
big-data software sequencing
updated 17 months ago by 44k • written 5.4 years ago by • 0
3
votes
4
replies
1.6k
views
Tool: SIMON says: Powerful, flexible, open-source and easy to use automated machine learning knowledge discovery platform
big-data machine-learning autoML systems-biology
updated 16 months ago by 44k • written 5.5 years ago by ▴ 20
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0
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2.0k
views
Job: Bioinformatician/Computational Life Scientist (m/f/d), Digital Health Centre, Berlin Institute of Health/Charite, Germany
big-data data-science genomics
updated 17 months ago by 44k • written 5.6 years ago by • 0
0
votes
0
replies
1.2k
views
Tutorial: Introduction to Gen3 Webinar
gen3 open-source data-commons big-data
updated 19 months ago by 44k • written 5.7 years ago by ▴ 310
0
votes
0
replies
1.3k
views
Job: Postdoctoral Research Associate, Washington University, St. Louis, MO, USA
proteomics big-data cancer genomics
updated 17 months ago by 44k • written 5.7 years ago by • 0
0
votes
2
replies
2.0k
views
Job: Bioinformatician, Center for Translational Data Science at the University of Chicago
big-data data-sharing data-commons
updated 17 months ago by 44k • written 5.8 years ago by ▴ 310
0
votes
0
replies
2.1k
views
News: Introduction to Machine Learning Workshop
Machine-Learning Big-Data Python
updated 17 months ago by 44k • written 5.9 years ago by ★ 2.6k
0
votes
0
replies
1.1k
views
News: Data manipulation and visualization with Python
python Big-Data genomics
updated 17 months ago by 44k • written 6.0 years ago by ★ 2.6k
21
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11
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2.3k
views
Forum: Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 17 months ago by 44k • written 6.2 years ago by ★ 9.5k
0
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0
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1.3k
views
Job: Work with me at HudsonAlpha Institute for Biotechnology in Huntsville, AL
data-science big-data
updated 17 months ago by 44k • written 6.4 years ago by 7.4k
0
votes
0
replies
1.6k
views
Job: Looking for BioStatistician / BigData BioCurator Professional, Global Gene Corp Pvt Ltd, Mumbai/Ahmedabad, INDIA
big-data biostatistics data-curator
updated 17 months ago by 44k • written 6.5 years ago by • 0
57
votes
15
replies
7.0k
views
9 follow
Forum: Good practices while dealing with very large datasets
Big-Data Programming
updated 17 months ago by 44k • written 7.5 years ago by ★ 1.2k
0
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0
replies
2.5k
views
News: Structural Bioinformatics Training Workshop & Hackathon 2017 - Application of Big Data Technology and 3D Visualization
Structural-Bioinformatics Big-Data
updated 17 months ago by 44k • written 7.6 years ago by ▴ 110
2
votes
4
replies
3.5k
views
Advice on assembling very large metagenomic dataset?
metagenomics assembly genomics big-data large
updated 7.7 years ago by ▴ 30 • written 7.7 years ago by ▴ 740
2
votes
3
replies
3.1k
views
Job: Postdoc Structural Bioinformatics/Big Data at UC San Diego
Big-Data Structural-Bioinformatics
updated 18 months ago by 44k • written 7.7 years ago by ▴ 50
0
votes
0
replies
1.9k
views
Job: Assistant/Associate Professor of Computational Biology, Dana-Farber Cancer Institute (DFCI), Boston, MA, USA
immunology big-data machine-learning
updated 18 months ago by 44k • written 7.8 years ago by • 0
3
votes
0
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3.1k
views
Job: Over 10 computational biology PhD and postdoc positions in Lausanne, London. Stockholm & Ghent (updated)
semantic-web phd big-data postdoc
updated 18 months ago by 44k • written 8.0 years ago by ▴ 740
0
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0
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3.2k
views
Job: R&D Scientist, Computational Biology - Agilent Technologies, Santa Clara, CA
cloud big-data machine-learning
updated 19 months ago by 44k • written 8.3 years ago by ★ 4.3k
0
votes
0
replies
2.2k
views
Job: Postdoc position: Structural Bioinformatics/Big Data at UC San Diego
Apache-Spark Big-Data Structural-Bioinformatics
updated 19 months ago by 44k • written 8.5 years ago by ▴ 110
0
votes
0
replies
1.5k
views
Determine characteristics(phenotype) from genomes
programming biology big-data DNA
updated 19 months ago by 44k • written 8.5 years ago by ▴ 20
0
votes
0
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2.6k
views
Job: Postdoctoral position: Big Data/Computational Biology at UC San Diego
Big-Data Apache-Spark
updated 19 months ago by 44k • written 8.7 years ago by ▴ 110
0
votes
0
replies
2.0k
views
Job: postdoc in big data neuroscience
big-data R neuroscience
updated 2.3 years ago by 44k • written 8.8 years ago by • 0
0
votes
0
replies
1.9k
views
Job: Funded PhD Position at Computer Science Dept. Amrita University - Bangalore
PHD biotech big-data software-development
updated 2.2 years ago by 44k • written 8.9 years ago by • 0
2
votes
0
replies
2.3k
views
Job: Biomedical Data Engineer Position, SRI International, Menlo Park, CA
big-data brain
updated 2.2 years ago by 44k • written 9.0 years ago by ▴ 20
3
votes
3
replies
7.2k
views
Quantile normalization in huge matrices
matrix big-data r
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 70
2
votes
5
replies
3.2k
views
Binding several large matrices by column
big-data R matrix
updated 2.1 years ago by 44k • written 9.1 years ago by ▴ 70
3
votes
0
replies
2.1k
views
News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 130
0
votes
0
replies
3.3k
views
Job: Postdoctoral Position in Structural Bioinformatics/Big Data at UC San Diego
Structural-Bioinformatics Big-Data
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 110
0
votes
0
replies
1.7k
views
Job: Full stack web engineer positions at the Joint Genome Institute in the Phytozome Plant Genomics Program
big-data plants genomics javascript phytozome
updated 2.1 years ago by 44k • written 9.2 years ago by • 0
0
votes
0
replies
2.9k
views
Job: Data scientist position in computational biology and high-performance/cloud computing
cloud-computing big-data machine-learning
updated 19 months ago by 44k • written 9.3 years ago by ▴ 200
5
votes
11
replies
2.6k
views
Technology advice: NGS shotgun sequencing on small proteins - Data Storage Option? (Hardware + Software)
ngs sequencing big-data data-storage
updated 23 months ago by 44k • written 9.3 years ago by • 0
3
votes
0
replies
3.4k
views
Job: Bioinformatics Programmer / Web Developer, Su Lab, Scripps Research Institute, San Diego, CA, USA
citizen-science crowdsourcing big-data
updated 3.0 years ago by 44k • written 10.1 years ago by 4.9k
43 results • Page 1 of 1
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Comment: Finding Differential Phosphosites in TMT Phosphoproteomics Data
Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How?
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
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Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
Comment: How to determine whether it is 10x data by king • 0
Thank you for your answer, it's very inspiring.
Comment: Inquiry about depth of coverage and copy number variation by Chen • 0
Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
Comment: Can a read be aligned more than once? by GenoMax 146k
Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
Comment: Statistical test to be used for dataset by allingt • 0
The choice of test depends on the types of variables involved and the hypothesis you have. But most importantly on the question you want am…
Comment: dittoHeatmap; adding column labels on the heatmap by jared.andrews07 ★ 18k
I'd consider making a [block annotation](https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#block-annotation…
Comment: Comparing GSEA mutant data to wild type by allingt • 0
What do you mean by "significant gene"? How did you perform GSEA and on how did you rank your genes for it? From guesswork I might initiall…
Comment: Genes of Interest in a Multi-Tissue Analysis by allingt • 0
The DESeq2 manual tells us that the object class of vst() output is a subclass of RangedSummarizedExperiment. I suspect the methods applica…
Comment: WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendr by allingt • 0
Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
Comment: Why does WGCNA use weighted correlation instead of Pearson correlation? by allingt • 0
The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
Comment: dittoHeatmap; adding column labels on the heatmap by Varun Gupta ★ 1.3k
any idea, how can I display the labels Pre and POst on the top of the heatmap? I am looking at complexheatmap package as to how they displa…
Comment: How can I determine the p-value of genes within each identified module in WGCNA? by allingt • 0
What p-value do you mean? When and how did you calculate it?
Answer: What is a genomic range that would almost always get decent WGS coverage but is by i.sudbery 20k
What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input by i.sudbery 20k
One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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