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Showing top results for tag:
ADMIXTURE
•
reset
0
votes
0
replies
125
views
Plotting admixture output with circular barplot using membercoeff.circos
bitev2
membercoeff
admixture
11 days ago by
PKW
▴ 110
5
votes
12
replies
4.4k
views
10 follow
ADMIXTURE Segmentatio fault
admixture
plink
vcf
updated 9 weeks ago by
Etienne DVRK
• 0 • written 3.3 years ago by
pmc.sa
▴ 40
0
votes
1
reply
294
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
updated 4 months ago by
andersdetermig
▴ 20 • written 4 months ago by
Christopher
• 0
0
votes
0
replies
299
views
supervised admixture
supervised
admixture
4 months ago by
RT
▴ 10
0
votes
0
replies
352
views
Infer ancestry for RNA-seq data
plink
admixture
ancestry
updated 9 months ago by
Ram
44k • written 9 months ago by
Matthew Chang
• 0
0
votes
0
replies
258
views
ADMIXTURE Freezes Right Before Completion
ADMIXTURE
admixture
10 months ago by
maxlaubstein
• 0
0
votes
0
replies
386
views
beagle to gds for admixture mapping
admixture
genesis
gwastools
gds
beagle
10 months ago by
nanodano
▴ 30
0
votes
2
replies
787
views
Does ploidy in variant calling affect admixture detection with TreeMix?
ploidy
admixture
SNP
TreeMix
11 months ago by
Michael
55k
0
votes
5
replies
1.0k
views
bad alloc with admixture32
admixture
admixture32
updated 15 months ago by
Vic
▴ 100 • written 15 months ago by
Loïs
• 0
0
votes
1
reply
644
views
How can I create more accurate admixture plot like this?
admixture
vcf
plink
updated 16 months ago by
Ram
44k • written 16 months ago by
kgwkk2
• 0
1
vote
2
replies
4.1k
views
Error opening .bim file while running Admixture
software-error
Admixture
genome
SNP
plink
updated 17 months ago by
Ram
44k • written 5.1 years ago by
tsarvale
▴ 10
0
votes
5
replies
5.3k
views
6 follow
Admixture cv error
Structure
CV-Error-Rates
Admixture
updated 18 months ago by
Ram
44k • written 8.6 years ago by
s.bourne
• 0
0
votes
0
replies
676
views
Admixture error in removing loci with no genotypes even after filtering loci
plink
ADMIXTURE
vcftools
updated 15 months ago by
Ram
44k • written 19 months ago by
Whirlingdaf
▴ 60
0
votes
0
replies
455
views
Estimating timing of admixture
event
Inference
Hybrids
Generations
since
admixture
19 months ago by
Matteo
▴ 10
0
votes
0
replies
411
views
Reference panel when doing ADMIXTURE
admixture
19 months ago by
Karan
▴ 10
0
votes
0
replies
578
views
Modifying an ADMIXTURE plot
admixture
pong
2.0 years ago by
nanodano
▴ 30
0
votes
0
replies
867
views
ADMIXTURE zsh:abort error
Admixture
genetics
structure
population
updated 16 months ago by
Ram
44k • written 2.1 years ago by
Whirlingdaf
▴ 60
0
votes
1
reply
655
views
How to combine the result of multipe faststructure or admixture runs
admixture
faststructure
updated 20 months ago by
dr.fakharunnisa
• 0 • written 2.2 years ago by
strive
• 0
1
vote
8
replies
2.2k
views
admixture crashes without explanation
admixture
updated 2.3 years ago by
Ram
44k • written 2.3 years ago by
dec986
▴ 380
0
votes
0
replies
635
views
Running ADMIXTURE on .ped files
ped
bed
ADMIXTURE
plink
Stacks
2.3 years ago by
Austin
• 0
0
votes
4
replies
1.1k
views
admixture mem error, but not out of RAM
admixture
2.3 years ago by
dec986
▴ 380
1
vote
2
replies
1.5k
views
Admixture: "PLINK Input file error"
plink
admixture
2.3 years ago by
dec986
▴ 380
1
vote
3
replies
1.2k
views
Using admixture to estimate ancestry from a single VCF with no family information
admixture
updated 2.4 years ago by
4galaxy77
2.8k • written 2.4 years ago by
dec986
▴ 380
0
votes
0
replies
416
views
ADMIXUTRE cross validation (cv)
vcf
plink
admixture
2.5 years ago by
simone.castellana
▴ 10
0
votes
0
replies
370
views
Speed up ADMIXTURE cross validation
arabidopsis.
admixture
population
1001genomes
structure
2.5 years ago by
simone.castellana
▴ 10
0
votes
0
replies
501
views
Standard Error Bars for CV error to determine best K in Admixture
ADMIXTURE
admixture
2.6 years ago by
Jennifer
• 0
1
vote
2
replies
896
views
Does anyone have the LAIT utils available?
admixture
LAIT
updated 2.7 years ago by
jahanshanzida
• 0 • written 3.4 years ago by
Fourie
▴ 10
2
votes
4
replies
2.0k
views
How to add a individuals IDs to admixture output?
admixture
population genetics
updated 20 months ago by
Brittany
• 0 • written 5.5 years ago by
rimgubaev
▴ 330
2
votes
3
replies
1.1k
views
Where did my sample names go when I run ADMIXTURE
structure
ADMIXTURE
updated 20 months ago by
dr.fakharunnisa
• 0 • written 3.0 years ago by
?
▴ 60
1
vote
0
replies
1.4k
views
when choosing the best K for ADMIXTURE should I use delta K method or cross validation error
clustering
cross-validation
ADMIXTURE
updated 21 months ago by
Ram
44k • written 3.0 years ago by
?
▴ 60
1
vote
2
replies
2.5k
views
How do I perform a plot from admixture analysis with multiple runs
multiple
admixture
plot
runs
updated 3.1 years ago by
Aaron
▴ 20 • written 3.2 years ago by
alexis.diaz
• 0
1
vote
6
replies
2.3k
views
Use of GenotypeGVCFs in population genetic studies
WGS
Introgression
GenotypeGVCFs
ADMIXTURE
GATK
updated 3.1 years ago by
vdauwera
★ 1.2k • written 3.1 years ago by
kk.mahsa
▴ 140
0
votes
1
reply
815
views
Expression recursion level exceeded Error in Admixture using mac computer
admixture
3.2 years ago by
alexis.diaz
• 0
2
votes
0
replies
664
views
Admixture Plot Problem
Admixture
3.4 years ago by
mscpythonstudy
▴ 20
0
votes
0
replies
620
views
Convert 70 VCF to PED and MAP plink files
plink
vcf
pca
admixture
3.6 years ago by
anithanagaraj93
▴ 10
1
vote
2
replies
859
views
Convergence issues in Admixture software
admixture
3.6 years ago by
rakinitopo
▴ 10
0
votes
0
replies
697
views
Need help for selecting the best K value of ADMIXTURE
admixture
population structure
3.6 years ago by
rprog007
• 0
0
votes
0
replies
729
views
Method for estimation of subcontinental admixture from haplogroup data
haplogroup
mtDNA
Y chromosome
admixture
3.8 years ago by
irieljoerin
▴ 40
0
votes
1
reply
1.3k
views
Admixture result interpretation
genome
ancestry
ancestry inference
admixture
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
ouyihaoo
• 0
0
votes
2
replies
1.1k
views
local ancestry in admixed populations
GWAS
admixture
updated 2.7 years ago by
jahanshanzida
• 0 • written 4.4 years ago by
alessandrotestori7
▴ 420
0
votes
0
replies
829
views
Which tools and datasets perform state of the art admixture analysis?
admixture
dataset
updated 15 months ago by
Ram
44k • written 4.5 years ago by
Paul E
• 0
0
votes
0
replies
1.5k
views
ANGSD genotype likelihood computing
genome
SNP
admixture
angsd
ngs
4.6 years ago by
marianaer98
• 0
2
votes
0
replies
1.1k
views
Forum:
How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry
chromosome-painting
ADMIXTURE
updated 16 months ago by
Ram
44k • written 4.6 years ago by
Charles Warden
8.3k
2
votes
2
replies
2.4k
views
ADMIXTURE optimal k depends on filters?
SNP
admixture
filtering
cross-validation
PLINK
updated 15 days ago by
Fabio Marroni
★ 3.0k • written 4.7 years ago by
RvV
▴ 30
9
votes
13
replies
6.4k
views
7 follow
Error message running admixture in WSL (Ubuntu) : Segmentation fault (core dumped)
software error
admixture
SNP
updated 4.7 years ago by
ndiaz
▴ 10 • written 5.2 years ago by
k.prata
▴ 10
0
votes
0
replies
802
views
Is it valuable to accept more than one Admixture K value for further analysis?
Admixture
Cross Validation
K values
Model Testing
4.7 years ago by
Ace
▴ 90
0
votes
1
reply
940
views
Is there a suit of scripts to process CLUMPAK's output?
CLUMPAK
Admixture
4.9 years ago by
joreamayarom
▴ 140
1
vote
2
replies
1.9k
views
meaning of Q_bias ADMIXTURE bootstrap
admixture
population
ancestry
updated 5.1 years ago by
icrojasb
• 0 • written 5.6 years ago by
samuelandjw
▴ 260
4
votes
1
reply
1.9k
views
ADMIXTURE haploid mode does not converge
admixture
population
updated 21 months ago by
Ram
44k • written 5.6 years ago by
samuelandjw
▴ 260
1
vote
1
reply
2.8k
views
Identify K value from ADMIXTURE cross-validation result
ADMIXTURE
K value
Population structure
updated 5.6 years ago by
Tm
★ 1.1k • written 5.6 years ago by
BioRyder
▴ 220
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