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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 6 weeks ago by 3.0k • written 7.9 years ago by 101k
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146
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News: Join our Eukaryotic Genome Assembly Using PacBio and Hi-C course, taking place online from 4-8 November 2024!
Pacbio Genome-Assembly HiC Long-Reads
updated 2 days ago by 44k • written 2 days ago by ★ 2.6k
0
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131
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News: Multivariate Data Analysis with R and vegan course
Multivariate Ordination-Methods PCA PCoA
5 days ago by carlopecoraro2 ★ 2.6k
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151
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News: Join Our Landscape Genomics Workshop in Lodz, Poland – January 20-24, 2025
Sambada Data-Integration Landscape-Genomics
6 days ago by carlopecoraro2 ★ 2.6k
0
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2
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271
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News: Course on Reproducibility Data Analysis with R
R Github Git Reproducibility Docker
7 days ago by carlopecoraro2 ★ 2.6k
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150
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News: Upcoming November Courses – Enhance Your Skills in Bioinformatics and Data Analysis
Population-Genomics scRNA-seq RNA-seq Metagenomics Genome-Assembly
10 days ago by carlopecoraro2 ★ 2.6k
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1
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315
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News: Online Workshop - Bioinformatics Pipeline Development with Nextflow (November 13-15, 2024)
Workshop Nextflow RNA-Seq
10 days ago by ecSeq Bioinformatics • 0
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126
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News: RNAseq in non-model organisms (online course)
Bioconductor Pacbio RNAseq
11 days ago by carlopecoraro2 ★ 2.6k
0
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86
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News: ONLINE COURSE – Introduction to Machine Learning using R and Rstudio (IMLR02)
Machine-Learning
updated 15 days ago by 44k • written 15 days ago by ▴ 110
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90
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News: ONLINE COURSE – Introduction to Single Cell Analysis (ISCA01)
Single-Cell scRNA-Seq
updated 15 days ago by 44k • written 15 days ago by ▴ 110
0
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122
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News: Course - Introduction to the Analysis of Longitudinal Data in Biology Using R
Longitudinal-Data R Epidemiology Forecasting Gene-Expression
updated 16 days ago by 44k • written 16 days ago by ★ 2.6k
0
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142
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News: Genomic Data Visualisation in R (online course)
Data-Visualisation Genomic-Data R
17 days ago by carlopecoraro2 ★ 2.6k
0
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253
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News: Machine Learning for Multi-Omics Integration (online course) -January 13-15, 2025
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 19 days ago by 44k • written 20 days ago by ★ 2.6k
0
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199
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News: Online Workshop - A Practical Introduction to NGS Data Analysis (December 9-11, 2024)
Workshop Variant-Calling RNA-Seq Illumina DNA-Seq
updated 20 days ago by 44k • written 20 days ago by • 0
0
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0
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143
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News: Eukaryotic Genome Assembly Using PacBio and Hi-C course (4-8 November)
Genome-Assembly PacBio Long-reads Hi-C
22 days ago by carlopecoraro2 ★ 2.6k
0
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0
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161
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News: ONLINE COURSE – Genome Assembly and Annotation (GAAA01)
Annotation Genome Assembly Genomics
updated 23 days ago by 146k • written 23 days ago by ▴ 110
0
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1
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215
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News: Course: Single-cell RNA-seq analysis with R/Bioconductor
Bioconductor single-cell-RNAseq
updated 23 days ago by ▴ 600 • written 23 days ago by ★ 2.6k
0
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0
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214
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News: Introduction to CRISPR-Cas9 course
Genome-Editing Crispr Evolution
updated 25 days ago by 44k • written 26 days ago by ★ 2.6k
0
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0
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209
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News: Course - RNA Sequencing Data with R/Bioconductor
R Bioconductor RNA-seq Differential-Expression-Analysis
updated 26 days ago by 44k • written 27 days ago by ★ 2.6k
0
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0
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136
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News: RADseq data analysis using Stacks (online course)
RADseq Phylogenomics Population-Genomics Stacks
updated 29 days ago by 44k • written 29 days ago by ★ 2.6k
0
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0
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159
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News: An Introduction to Nanopore direct RNA sequencing
cDNA RNA-seq Nanopore
updated 4 weeks ago by 44k • written 4 weeks ago by ★ 2.6k
1
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0
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187
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News: Landscape Genomics course in Poland (January 20-24)
R LocalAdaptation Sambada LandscapeGenomics LFMM
5 weeks ago by carlopecoraro2 ★ 2.6k
0
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0
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146
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News: Variant Analysis Online Course @ Edinburgh Genomics
variant-analysis online-training
updated 5 weeks ago by 44k • written 5 weeks ago by ▴ 40
0
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0
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212
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News: online course - Metabolomics with R/Bioconductor
Metabolomics Bioconductor Multivariate-Data Untargeted Targeted
updated 5 weeks ago by 44k • written 5 weeks ago by ★ 2.6k
0
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153
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News: Online course: Population Genomic Inference from Low-Coverage Whole-Genome Sequencing Data
low-coverage-WGS ANGSD Population-Genomics
updated 6 weeks ago by 44k • written 6 weeks ago by ★ 2.6k
0
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0
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219
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News: Course: Introduction to CRISPR
GenomeEditing CRISPR Evolution
6 weeks ago by carlopecoraro2 ★ 2.6k
0
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0
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237
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News: Metabolomics with R/Bioconductor Online Course
Metabolomics Bioconductor R
updated 6 weeks ago by 44k • written 7 weeks ago by ★ 2.6k
0
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0
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228
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News: Cellosaurus release 50 is available
database knowledgebase cell-line
updated 7 weeks ago by 44k • written 7 weeks ago by ▴ 120
0
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0
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192
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News: Course: Metabarcoding in Microbial Ecology
R Qiime2 Metabarcoding Microbial-Ecology
7 weeks ago by carlopecoraro2 ★ 2.6k
0
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0
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263
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News: Introduction to Nextflow course
Nextflow Pipeline Workflow-Manager Reproducibility
updated 7 weeks ago by 44k • written 7 weeks ago by ★ 2.6k
0
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0
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285
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News: Beyond Beginner R: Advancing Your Coding Skills (Sept 16-19, 2024)
R Coding Reproducibility Programming
updated 7 weeks ago by 44k • written 8 weeks ago by ★ 2.6k
0
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0
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259
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News: gnomAD v4 is now available on OpenCRAVAT!
gnomad Genomics OpenCRAVAT gnomADv4
updated 8 weeks ago by 44k • written 8 weeks ago by ▴ 10
0
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1
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304
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News: ICOBLET 2024
Conference
updated 8 weeks ago by 146k • written 8 weeks ago by • 0
0
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0
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234
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News: Join Our Online Course: Reproducibility Data Analysis with R (28-31 October 2024)
R Git Quarto Reproducibility Docker
8 weeks ago by carlopecoraro2 ★ 2.6k
0
votes
0
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135
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News: ICOBLET 2024
Conference
8 weeks ago by mohamedsalahamine.benouar • 0
0
votes
0
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215
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News: Course in Italy: Introduction to Statistics in R (30 September to 3 October 2024)
R GLM Statistics GLMM
9 weeks ago by carlopecoraro2 ★ 2.6k
0
votes
0
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201
views
News: Online course - Shotgun Metagenomics: Processing and Analysis
Prokka MetaPhlAn Metagenomics StrainPhlan PanPhlAn
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
1
vote
0
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169
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News: RNAseq and Single Cell Analysis Online Courses @ Edinburgh Genomics
RNA-seq single-cell workshop
updated 8 weeks ago by 44k • written 9 weeks ago by ▴ 10
0
votes
0
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146
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News: Phylogenomics course
Multispecies-Coalescent-Model Bayesian-Inference Phylogenomics Divergence-Time Maximum-Likelihood
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
1
vote
0
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259
views
News: Course - Machine Learning for Multi-Omics Integration
Machine-Learning Big-Data Multi-Omics Data-Integration Deep-Learning
updated 9 weeks ago by 44k • written 9 weeks ago by ★ 2.6k
0
votes
0
replies
237
views
News: Course: Introduction to Deep Learning
Deep-Learning Machine-Learning Python Convolutional-Neural-Network
5 weeks ago by carlopecoraro2 ★ 2.6k
3
votes
0
replies
171
views
News: Registration for the Nextflow Summit is still open. Get a 20% discount!
seqera nextflow
updated 10 weeks ago by 44k • written 10 weeks ago by ▴ 590
0
votes
0
replies
169
views
News: EMBO Practical Course Measuring translational dynamics by ribosome profiling
EMBORiboProf
10 weeks ago by EMBL Events ▴ 20
0
votes
0
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210
views
News: EMBL Conference The expanding world of RBPs: from posttranscriptional control to riboregulation
EMBLRBP
10 weeks ago by EMBL Events ▴ 20
1
vote
0
replies
161
views
News: EMBL Course Computing skills for reproducible research: software carpentry
EMBLSoftwareCarpentry
updated 10 weeks ago by 27k • written 10 weeks ago by ▴ 20
0
votes
0
replies
179
views
News: Course: Project Structure for Reproducible Work
workflows programming reproducibility replicability
updated 10 weeks ago by 44k • written 10 weeks ago by ▴ 10
0
votes
0
replies
167
views
News: Coding Courses @ Edinburgh Genomics
snakemake python R workshop linux
10 weeks ago by Kat @ EdGe ▴ 10
0
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0
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160
views
News: Course - Introduction to R Shiny
R Web-Applications Shiny
10 weeks ago by carlopecoraro2 ★ 2.6k
0
votes
0
replies
117
views
News: Course: Advance your Python Skills for Life Sciences
python vPython Pythonlang
updated 10 weeks ago by 44k • written 10 weeks ago by ▴ 70
0
votes
0
replies
110
views
News: Course: Introduction to R
Rproject Rlang Rstats
updated 10 weeks ago by 44k • written 10 weeks ago by ▴ 70
1,000 results • Page 1 of 20
Recent Votes
Comment: Finding Differential Phosphosites in TMT Phosphoproteomics Data
Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How?
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
A: How do I ask a question on Biostars?
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
Answer: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
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Answer: Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How? by ATpoint 85k
> But How could I know if the difference comes from sample instead of sequencing runs or cohort-driven batch effect? You cannot. It's pe…
Comment: Comparing GSEA mutant data to wild type by conmul • 0
Sorry that it was unclear in the post. The data is all CRISPR gene effect scores from DepMap. The 'significant genes' as mentioned in the p…
Comment: How to determine whether it is 10x data by king • 0
Thank you for your answer, it's very inspiring.
Comment: Inquiry about depth of coverage and copy number variation by Chen • 0
Thanks Pierre, I was actually thinking about the duplicate PCR reads and didn't explain it properly. I have found a post mentioning that qu…
Comment: Can a read be aligned more than once? by GenoMax 146k
Yes a read can be aligned more than once (I don't specifically know about gam/gaf). It would be called a "multi-mapping" read. You could im…
Comment: Statistical test to be used for dataset by allingt • 0
The choice of test depends on the types of variables involved and the hypothesis you have. But most importantly on the question you want am…
Comment: dittoHeatmap; adding column labels on the heatmap by jared.andrews07 ★ 18k
I'd consider making a [block annotation](https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#block-annotation…
Comment: Comparing GSEA mutant data to wild type by allingt • 0
What do you mean by "significant gene"? How did you perform GSEA and on how did you rank your genes for it? From guesswork I might initiall…
Comment: Genes of Interest in a Multi-Tissue Analysis by allingt • 0
The DESeq2 manual tells us that the object class of vst() output is a subclass of RangedSummarizedExperiment. I suspect the methods applica…
Comment: WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendr by allingt • 0
Did you perform blockwise module detection by any chance? Are your results object's contents sorted in blocks?
Comment: Why does WGCNA use weighted correlation instead of Pearson correlation? by allingt • 0
The WGCNA implementation by Langfelder and Horvath provides various correlation methods to create the initial correlation matrix. I don't t…
Comment: dittoHeatmap; adding column labels on the heatmap by Varun Gupta ★ 1.3k
any idea, how can I display the labels Pre and POst on the top of the heatmap? I am looking at complexheatmap package as to how they displa…
Comment: How can I determine the p-value of genes within each identified module in WGCNA? by allingt • 0
What p-value do you mean? When and how did you calculate it?
Answer: What is a genomic range that would almost always get decent WGS coverage but is by i.sudbery 20k
What about some of the well known enhancer regions, the globin locus LCR? Likely to be highly sequenceable, and yet not on exome panels.
Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input by i.sudbery 20k
One of the improvements that the using the `salmon` -> `tximport` -> `DESeq2` pipeline, over just a `counts`->`DESeq2` pipeline is the abil…
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