I am analyzing an RNA-seq dataset (GSE174302) produced using the HiSeq X Ten platform (GPL20795) for Homo sapiens. The fastQC report revealed failed Adapter Content checks, indicating that adapter sequences may be present in the reads. I would like to trim the adapter sequences but am unable to identify them.
The overrepresented sequences in the fastQC report show NO HIT
.I searched about HiSeq X Ten platform and I found that HiSeq X Reagent Kits support the TruSeq DNA PCR-Free Library Preparation Kit. Then I tried to find the adapter sequence in the Illumina adapter sequence sheet.
But, non of the adapters there were identical with the overrepresented sequences in the fastQC report.
Is there a way that gives me the adapter sequence?